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Ligand decane

Basic Ligand Information

Molecular Structure

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Roles as Enzyme Ligand

Substrate in Enzyme-catalyzed Reactions (2 results)

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Show Substrate (2 entries)

EC NUMBER

REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

1.14.15.3

decane + reduced rubredoxin + O2 + H+ = 1-decanol + oxidized rubredoxin + H2O

285361

-

1.14.15.3

decane + reduced rubredoxin + O2 = 1-decanol + oxidized rubredoxin + H2O

725284

-

1.14.15.3

2 entries

Product in Enzyme-catalyzed Reactions (1 result)

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Show Product (1 entry)

EC NUMBER

REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

4.1.99.5

n-undecanal + O2 + 2 NADPH + 2 H+ = n-decane + formate + H2O + 2 NADP+

0

-

Activator in Enzyme-catalyzed Reactions (3 results)

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Show Activating Compound (3 entries)

EC NUMBER

COMMENTARY

LITERATURE

ENZYME 3D STRUCTURE

2.4.1.19

increases the yield of cyclodextrin

488864

-

3.2.1.1

20% (v/v), 25°C, pH 8.5, 2 h, 1.4fold activation

727441

-

3.2.1.14

about 110% activity at 25%(v/v)

750244

-

Inhibitor in Enzyme-catalyzed Reactions (2 results)

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Show Inhibitors (2 entries)

EC NUMBER

COMMENTARY

LITERATURE

ENZYME 3D STRUCTURE

1.1.1.71

9% inhibition in buffer without NaCl, slight activation in buffer with 600 mM NaCl

726712

-

1.14.15.3

0.1% (v/v)

657600

-

3D Structure of Enzyme-Ligand-Complex (PDB) (29 results)

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Show 3D Structure of Enzyme-Ligand-Complex (PDB) (29 entries)

EC NUMBER

ENZYME 3D STRUCTURE

1.14.13.25

7s4h, 3D-view

1.14.13.25

7s4i, 3D-view

1.14.13.25

7s4j, 3D-view

1.14.13.25

7s4k, 3D-view

1.14.13.25

7s4l, 3D-view

1.14.13.25

7t4o, 3D-view

1.14.13.25

7t4p, 3D-view

1.14.13.25

7s4h, 3D-view

1.14.13.25

7s4i, 3D-view

1.14.13.25

7s4j, 3D-view

1.14.13.25

7s4k, 3D-view

1.14.13.25

7s4l, 3D-view

1.14.13.25

7t4o, 3D-view

1.14.13.25

7t4p, 3D-view

1.14.18.3

7s4h, 3D-view

1.14.18.3

7s4i, 3D-view

1.14.18.3

7s4j, 3D-view

1.14.18.3

7s4k, 3D-view

1.14.18.3

7t4o, 3D-view

1.14.18.3

7t4p, 3D-view

1.14.18.3

7s4h, 3D-view

1.14.18.3

7s4i, 3D-view

1.14.18.3

7s4j, 3D-view

1.14.18.3

7s4k, 3D-view

1.14.18.3

7t4o, 3D-view

1.14.18.3

7t4p, 3D-view

1.14.13.25

14 entries

1.14.18.3

12 entries

2.1.1.100

5v7p, 3D-view

3.6.3.49

5uar, 3D-view

5.6.1.6

7svd, 3D-view

Enzyme Kinetic Parameters

K_M Value (1 result)

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Show KM Value (1 entry)

EC NUMBER

KM VALUE [MM]

KM VALUE MAXIMUM [MM]

COMMENTARY

LITERATURE

1.14.15.3

0.58

-

-

285361

References & Links

Literature References (7)

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Show Reference (7 entries)

BRENDA REFERENCE ID

PUBMED ID

TITLE

YEAR

AUTHORS

JOURNAL

VOLUME

PAGES

285361

4294330

Enzymatic omega-oxidation. II. Function of rubredoxin as the electron carrier in omega-hydroxylation

1967

Peterson, J.A.; Kusunose, M.; Kusunose, E.; Coon, M.J.

J. Biol. Chem.

242

4334-4340

488864

12728995

Isolation of Paenibacillus illinoisensis that produces cyclodextrin glucanotransferase resistant to organic solvents

2003

Doukyu, N.; Kuwahara, H.; Aono, R.

Biosci. Biotechnol. Biochem.

67

334-340

657600

15294784

Oxidation of methyl tert-butyl ether by alkane hydroxylase in dicyclopropylketone-induced and n-octane-grown Pseudomonas putida GPo1

2004

Smith, C.A.; Hyman, M.R.

Appl. Environ. Microbiol.

70

4544-4550

725284

23417490

Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. strain T7-7

2013

Li, P.; Wang, L.; Feng, L.

J. Bacteriol.

195

1892-1901

726712

20418438

Characterization of a thermostable short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus

2010

Stekhanova, T.N.; Mardanov, A.V.; Bezsudnova, E.Y.; Gumerov, V.M.; Ravin, N.V.; Skryabin, K.G.; Popov, V.O.

Appl. Environ. Microbiol.

76

4096-4098

727441

23695659

Biochemical characterization of an extracellular polyextremophilic alpha-amylase from the halophilic archaeon Halorubrum xinjiangense

2013

Moshfegh, M.; Shahverdi, A.R.; Zarrini, G.; Faramarzi, M.A.

Extremophiles

17

677-687

750244

30616169

Purification and biochemical characterization of a novel acido-halotolerant and thermostable endochitinase from Melghiribacillus thermohalophilus strain Nari2AT

2019

Mohamed, S.; Bouacem, K.; Mechri, S.; Addou, N.A.; Laribi-Habchi, H.; Fardeau, M.L.; Jaouadi, B.; Bouanane-Darenfed, A.; Hacene, H.

Carbohydr. Res.

473

46-56

Links to other databases for decane

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Show Links (1 entry)

ChEBI

PubChem