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Enzyme Kinetic Parameters
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Ligand xylotetraose

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Basic Ligand Information

Molecular Structure

Picture of xylotetraose (click for magnification)

Molecular Formula

BRENDA Name

InChIKey

C₂₀H₃₄O₁₇

xylotetraose

KPTPSLHFVHXOBZ-SVRBUABSSA-N

Synonyms:

1,4-beta-D-xylotetraose, beta -1,4-xylotetraose, beta-1,4-xylotetraose, beta-D-xylopyranosyl-(1-4)-beta-D-xylopyranosyl-(1-4)-beta-D-xylopyranosyl-(1-4)-beta-D-xylopyranose, beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranose, [(1->4)-beta-D-xylosyl]4

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Roles as Enzyme Ligand

In Vivo Product in Enzyme-catalyzed Reactions (1 result)

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EC NUMBER

PROVEN IN VIVO REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

3.2.1.8

xylan + H2O = D-xylotriose + xylotetraose + ?

Substrate in Enzyme-catalyzed Reactions (26 results)

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EC NUMBER

REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

1.1.99.B3

xylotetraose + O2 = xylotetraono-1,5-lactone + H2O2

740204

2.4.2.24

UDP-D-xylose + beta-1,4-xylotetraose = UDP + ?

736997

2.4.2.24

UDP-D-xylose + xylotetraose = ?

723486

3.2.1.156

beta-D-xylopyranosyl-(1-4)-beta-D-xylopyranosyl-(1-4)-beta-D-xylopyranosyl-(1-4)-beta-D-xylopyranose + H2O = ?

659431

3.2.1.156

xylotetraose + H2O = 2 D-xylose + xylobiose

752545

3.2.1.156

xylotetraose + H2O = ?

713876

3.2.1.156

xylotetraose + H2O = xylose + xylobiose

731182

3.2.1.156

xylotetraose + H2O = xylotriose + xylobiose

677695

3.2.1.32

xylotetraose + H2O = xylose + ?

663961

3.2.1.32

xylotetraose + H2O = xylose + xylotriose + xylobiose

136250, 136243

3.2.1.37

xylotetraose + 3 H2O = 4 D-xylose

709556, 707536, 743025, 708923, 749653

3.2.1.37

xylotetraose + 3 H2O = 4 xylose

654981

3.2.1.37

xylotetraose + H2O = ?

746353

3.2.1.37

xylotetraose + H2O = beta-D-xylose + ?

749706

3.2.1.37

xylotetraose + H2O = xylotriose + beta-D-xylose

136305, 136315, 136280, 136304, 683277, 136313, 666625, 752093, 136277, 136279, 136281, 683995, 749602

3.2.1.37

xylotetraose + H2O = xylotriose + D-xylose

beta -1,4-xylotetraose = D-xylose

677708

3.2.1.8

beta-1,4-xylotetraose + H2O = ?

749504

3.2.1.8

xylotetraose + 3 H2O = 4 xylose

750084

3.2.1.8

xylotetraose + H2O = 2 xylobiose

699053, 729014, 742680, 750497, 750988, 749635, 738127, 677745, 677960, 695678

3.2.1.8

xylotetraose + H2O = ?

682685, 656559, 665493, 677613, 681466, 737905, 750435, 744626

3.2.1.8

xylotetraose + H2O = D-xylose + ?

707567

3.2.1.8

xylotetraose + H2O = more

171594, 171619, 171614, 171587, 171596, 171585, 171612, 171649, 171582

3.2.1.8

xylotetraose + H2O = xylobiose + xylobiose

677533

3.2.1.8

xylotetraose + H2O = xylobiose + xylotriose

696856, 696842

3.2.1.8

xylotetraose + H2O = xylotetraose + xylotriose + xylobiose + xylose

745089

3.2.1.8

9 entries

Product in Enzyme-catalyzed Reactions (47 results)

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EC NUMBER

REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

2.4.1.49

xylotriose + alpha-D-xylose 1-phosphate = xylotetraose + phosphate

2.4.1.49

[(1->4)-beta-D-xylosyl]3 + alpha-D-glucose 1-phosphate = [(1->4)-beta-D-xylosyl]4 + phosphate

3.2.1.131

glucuronoxylan alpha-(4-O-methyl)-glucuronide + H2O = xylotriose + xylotetraose + ?

3.2.1.131

Xyl-Xyl(MeGlcA)-Xyl-Xyl + H2O = 4-O-methyl-alpha-D-glucuronic acid + xylotetraose

3.2.1.139

4-O-methyl-alpha-D-glucopyranosyl-(1->2)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranose + H2O = 4-O-methyl-alpha-D-glucopyranose + beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranose

3.2.1.139

4-O-methyl-glucuronosyl-xylotetraose + H2O = 4-O-methyl-glucuronate + xylotetraose

xylopentaose + H2O = xylotetraose + xylobiose

3.2.1.176

xylan + H2O = xylobiose + xylotetraose + xylohexaose

3.2.1.32

xylan (birchwood) + H2O = xylotetraose + ?

3.2.1.32

xylan (larchwood) + H2O = xylotetraose + ?

3.2.1.32

xylan (oat spelts) + H2O = xylotetraose + ?

3.2.1.32

xylopentaose + H2O = xylose + xylotetraose + xylobiose + xylotriose

136250, 136243

3.2.1.37

3 xylotriose = xylotetraose + xylopentaose

136315

3.2.1.37

4-nitrophenyl beta-D-xylopyranoside + xylotriose = 4-nitrophenol + xylotetraose

3(3)-alpha-L-arabinofuranosyl xylotetraose + H2O = arabinose + xylotetraose

3.2.1.8

beta-1,4-xylan + H2O = D-xylose + 1,4-beta-D-xylobiose + 1,4-beta-D-xylotriose + 1,4-beta-D-xylotetraose

3.2.1.8

arabinoxylan + H2O = xylobiose + xylotriose + xylotetraose + ?

3.2.1.8

beechwood xylan + H2O = xylose + xylobiose + xylotetraose

3.2.1.8

beechwood xylan + H2O = xylotriose + xylotetraose + xylopentaose + ?

3.2.1.8

beta-1,4-xylan + H2O = xylotriose + xylotetraose + xylopentaose + xylopentaose + xylohexaose + xyloheptaose

3.2.1.8

birch wood xylan + H2O = xylobiose + xylotriose + xylotetraose + ?

3.2.1.8

birchwood xylan + H2O = D-xylose + xylobiose + xylotriose + xylotetraose + xylopentaose + xylohexaose

3.2.1.8

birchwood xylan + H2O = xylobiose + xylotetraose + ?

3.2.1.8

birchwood xylan + H2O = xylotetraose + xylotriose + xylobiose + xylose

3.2.1.8

rhodymenan + H2O = xylose + xylobiose + xylotetraose + xylopentaose

3.2.1.8

rhodymenan + H2O = xylotriose + xylotetraose + ?

3.2.1.8

wheat bran xylan + H2O = D-xylose + xylobiose + xylotriose + xylotetraose + xylopentaose + xylohexaose

3.2.1.8

xylan + H2O = D-xylotriose + xylotetraose + ?

3.2.1.8

xylan + H2O = xylobiose + xylotetraose + ?

3.2.1.8

xylan + H2O = xylobiose + xylotriose + xylotetraose

3.2.1.8

xylan + H2O = xylobiose + xylotriose + xylotetraose + ?

3.2.1.8

xylan + H2O = xylobiose + xylotriose + xylotetraose + xylooligosaccharides

3.2.1.8

xylan + H2O = xylobiose + xylotriose + xylotetraose + xylopentaose + xylohexaose + xyloheptaose + xylooctaose + xylononaose

3.2.1.8

xylan + H2O = xylose + xylotriose + xylotetraose

3.2.1.8

xylan + H2O = xylotriose + xylotetraose + ?

3.2.1.8

xylan + H2O = xylotriose + xylotetraose + larger xylooligosaccharides

3.2.1.8

xyloheptaose + H2O = xylobiose + xylotriose + xylotetraose

0, 171648

3.2.1.8

xyloheptaose + H2O = xylotriose + xylotetraose + ?

3.2.1.8

xylohexaose + H2O = xylobiose + xylotriose + xylotetraose

3.2.1.8

xylohexaose + H2O = xylopentaose + xylotetraose + xylotriose + xylobiose + xylose

3.2.1.8

xylooctaose + H2O = xylobiose + xylotriose + xylotetraose

0, 171648

3.2.1.8

xylooligosaccharide + H2O = D-xylotriose + xylotetraose

3.2.1.8

xylopentaose + H2O = xylobiose + xylotriose + xylotetraose

3.2.1.8

xylopentaose + H2O = xylopentaose + xylotetraose + xylotriose + xylobiose + xylose

3.2.1.8

xylotetraose + H2O = xylotetraose + xylotriose + xylobiose + xylose

3.2.1.8

xylotriose = xylobiose + xylotetraose

xylan + H2O = xylobiose + xylotetraose + xylohexaose

393785, 0

Enzyme Kinetic Parameters

k_cat Value (Turnover Number) (10 results)

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EC NUMBER

TURNOVER NUMBER [1/S]

TURNOVER NUMBER MAXIMUM [1/S]

COMMENTARY

LITERATURE

1.1.99.B3

8.1

mutant enzyme A38V/S388N, at pH 8.0 and 37Â°C

740204

1.1.99.B3

9.7

wild type enzyme, at pH 8.0 and 37Â°C

740204

1.1.99.B3

mutant enzyme A38V, at pH 8.0 and 37Â°C

162

350

pH 7.5, 37Â°C

663961

3.2.1.37

0.0027

pH 4.0, 40Â°C

683277

3.2.1.37

0.0036

pH 4.0, 40Â°C

40Â°C, pH 6.5

51.2

at pH 3.0 and 50Â°C

0.162

in 10 mM ammonium acetate buffer at pH 5.0 and 20Â°C

677533

K_M Value (15 results)

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EC NUMBER

KM VALUE [MM]

KM VALUE MAXIMUM [MM]

COMMENTARY

LITERATURE

1.1.99.B3

0.067

mutant enzyme A38V, at pH 8.0 and 37Â°C

740204

1.1.99.B3

0.07

wild type enzyme, at pH 8.0 and 37Â°C

740204

1.1.99.B3

0.11

mutant enzyme A38V/S388N, at pH 8.0 and 37Â°C

740204

2.4.2.24

5.27

co-substrate: UDP-D-xylose, Km determined in microsomes co-expressing PtrGT43B and PtrGT43C. pH and temperature not specified in the publication

723486

2.4.2.24

5.9

co-substrate: UDP-D-xylose, Km determined in microsomes from poplar stems. pH and temperature not specified in the publication

0.005

0.74

pH 7.5, 37Â°C

663961

3.2.1.37

0.15

pH 4.0, 40Â°C

683277

3.2.1.37

0.16

pH 4.0, 40Â°C

683277

3.2.1.37

0.2

at pH 3.0 and 50Â°C

749653

3.2.1.37

7.2

pH 5.0, 40Â°C

707536

3.2.1.37

18.4

40Â°C, pH 6.5

749706

3.2.1.8

0.103

pH 4.5, 30Â°C, wild-type XynB

707567

3.2.1.8

0.183

pH 4.5, 30Â°C, XynB mutant DELTAP130/K131S/K132S

707567

3.2.1.8

0.25

pH 4.5, 30Â°C, XynB mutant K131S/K132S

References & Links

Literature References (72)

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BRENDA REFERENCE ID

PUBMED ID

TITLE

YEAR

AUTHORS

JOURNAL

VOLUME

PAGES

136243

Purification and characterization of an endo-beta-1,3-xylanase from Vibrio sp.

1988

Aoki, T.; Araki, T.; Kitamikado, M.

Nippon Suisan Gakkaishi

277-281

136250

12501421

Purification and characterization of beta-1,3-xylanase from a marine bacterium Alcaligenes sp. XY-234

1998

Araki, T.; Inoue, N.; Morishita, T.

J. Gen. Appl. Microbiol.

269-274

136277

Purification and regulation of the synthesis of a beta-xylosidse from Aspergillus nidulans

1996

Kumar, S.; Ramon, D.

FEMS Microbiol. Lett.

135

287-293

136279

7574661

Biochemical properties of a beta-xylosidase from Clostridium cellulolyticum

1995

Saxena, S.; Fierobe, H.P.; Gaudin, C.; Guerlesquin, F.; Belaich, J.P.

Appl. Environ. Microbiol.

3509-3512

136280

Genetic organization, sequence and biochemical characterzation of recombinant beta-xylosidase from Thermoanaerobacterium saccharolyticumm strain B6A-RI

1993

Lee, Y.E.; Zeikus, J.G.

J. Gen. Microbiol.

139

1235-1243

136281

Purification and characterization of three endo-(1,4)-beta-xylanases and one beta-xylosidase from Aspergillus awamori

1993

Kormelink, F.J.M.; Searle-Van Leeuwen, M.J.F.; Wood, T.M.; Voragen, A.G.J.

J. Biotechnol.

249-265

136304

Purification and some properties of beta-xylosidase from Trichoderma viride

1984

Matsuo, M.; Yasui, T.

Agric. Biol. Chem.

1845-1852

136305

Purification and some properties of beta-xylosidase from Eimericella nidulans

1984

Matsuo, M.; Yasui, T.

Agric. Biol. Chem.

1853-1860

136313

Enzymatic properties of beta-xylosidase from Malbranchea pulchella var. sulfurea no. 48

1977

Matsuo, M.; Yasui, T.; Kobayashi, T.

Agric. Biol. Chem.

1601-1606

136315

4709621

Studies on hemicellulases IV. Purification and properties of the beta-xylosidase produced by Aspergillus niger van Tieghem

1973

Takenishi, S.; Tsujisaka, Y.; Fukumoto, J.

J. Biochem.

335-343

171582

7765283

Purification and characterization of xylanase A from Clostridium stercorarium F-9 and a recombinant Escherichia coli

1994

Sakka, K.; Kojima, Y.; Kondo, T.; Karita, S.; Shimada, K.; Ohmiya, K.

Biosci. Biotechnol. Biochem.

1496-1499

171585

Xylanase of Cryptococcus albidus

1988

Biely, P.; Vrsanska, M.

Methods Enzymol.

160

638-648

171586

Xylanase of Bacillus pumilus

1988

Okada, H.; Shinmyo, A.

Methods Enzymol.

160

632-637

171587

Xylanase of Malbranchea pulchella var. sulfurea

1988

Matsuo, M.; Yasui, T.

Methods Enzymol.

160

671-674

171594

Purification and properties of three types of xylanases induced by methyl beta-xyloside from Streptomyces sp.

1985

Marui, M.; Nakanishi, K.; Yasui, T.

Agric. Biol. Chem.

3399-3407

171596

Properties of xylanase of Malbranchea pulchella var. Sulfurea No. 48

1985

Matsuo, M.; Yasui, T.

Agric. Biol. Chem.

839-841

171612

4093442

Purification and properties of two endo-1,4-beta-xylanases from Irpex lacteus (Polyporus tulipiferae)

1985

Kanda, T.; Amano, Y.; Nisizawa, K.

J. Biochem.

1545-1554

171614

Functional characteristics of two D-xylanases from Trichoderma harzianum

1985

Tan, L.U.L.; Wong, K.K.Y.; Saddler, J.N.

Enzyme Microb. Technol.

431-437

171619

Purification and some properties of an endo-1,4-beta-D-xylanase from Streptomyces sp.

1984

Nakajima, T.; Tsukamoto, K.I.; Watanabe, T.; Kainuma, K.; Matsuda, K.

J. Ferment. Technol.

269-276

171624

Purification and properties of endoxylanase produced by Bacillus pumilus

1983

Panbangred, W.; Shinmyo, A.; Kinoshita, S.; Okada, H.

Agric. Biol. Chem.

957-963

171648

Mode of action, kinetic properties and physicochemical characterization of two different domains of a bifunctional (1->4)-beta-D-xylanase from Ruminococcus flavefaciens expressed separately in Escherichia coli

1993

Garcia-Campayo, V.; McCrae, S.I.; Zhang, J.X.; Flint, H.J.; Wood, T.M.

Biochem. J.

296

235-243

171649

2105888

Purification and properties of an endo-1,4-xylanase excreted by a hydrolytic thermophilic anaerobe, Clostridium thermolacticum. A proposal for its action mechanism on larchwood 4-O-methylglucuronoxylan

1990

Debeire, P.; Priem, B.; Strecker, G.; Vignon, M.

Eur. J. Biochem.

187

573-580

393785

Purification and specificity of a specific endo-beta-1,4-D-glucanase (avicelase II) resemling exo-cellobiohydrolase from Bacillus circulans

1995

Kim, C.H.; Kim, D.S.

Enzyme Microb. Technol.

248-254

654981

12835054

Purification and properties of an extracellular beta-xylosidase from a newly isolated Fusarium proliferatum

2003

Saha, B.C.

Bioresour. Technol.

33-38

656559

Catalytic properties of the endoxylanase I from Thermoascus aurantiacus

2001

Kalogeris, E.; Christakopoulos, P.; Vrsanska, M.; Kekos, D.; Biely, P.; Macris, B.J.

J. Mol. Catal. B

491-501

659431

15491996

A family 8 glycoside hydrolase from Bacillus halodurans C-125 (BH2105) is a reducing end xylose-releasing exo-oligoxylanase

2004

Honda, Y.; Kitaoka, M.

J. Biol. Chem.

279

55097-55103

663961

15743273

Molecular cloning and characterization of a novel beta-1,3-xylanase possessing two putative carbohydrate-binding modules from a marine bacterium Vibrio sp. strain AX-4

2005

Kiyohara, M.; Sakaguchi, K.; Yamaguchi, K.; Araki, T.; Nakamura, T.; Ito, M.

Biochem. J.

388

949-957

665493

14670951

Structural and biochemical analysis of Cellvibrio japonicus xylanase 10C: how variation in substrate-binding cleft influences the catalytic profile of family GH-10 xylanases

2004

Pell, G.; Szabo, L.; Charnock, S.J.; Xie, H.; Gloster, T.M.; Davies, G.J.; Gilbert, H.J.

J. Biol. Chem.

279

11777-11788

666625

15181203

Purification and characterization of enzymes exhibiting beta-D-xylosidase activities in stem tissues of Arabidopsis

2004

Minic, Z.; Rihouey, C.; Do, C.T.; Lerouge, P.; Jouanin, L.

Plant Physiol.

135

867-878

677533

17475200

Determination of steady-state kinetic parameters for a xylanase-catalyzed hydrolysis of neutral underivatized xylooligosaccharides by mass spectrometry

2007

Jaenis, J.; Pulkkinen, P.; Rouvinen, J.; Vainiotalo, P.

Anal. Biochem.

365

165-173

677613

18027102

Biochemical characterization and sequence analysis of a xylanase produced by an exo-symbiotic bacterium of Gryllotalpa orientalis, Cellulosimicrobium sp. HY-12

2007

Oh, H.W.; Heo, S.Y.; Kim, D.Y.; Park, D.S.; Bae, K.S.; Park, H.Y.

Antonie van Leeuwenhoek

437-442

677695

17586675

Recombinant expression and characterization of a reducing-end xylose-releasing exo-oligoxylanase from Bifidobacterium adolescentis

2007

Lagaert, S.; Van Campenhout, S.; Pollet, A.; Bourgois, T.M.; Delcour, J.A.; Courtin, C.M.; Volckaert, G.

Appl. Environ. Microbiol.

5374-5377

677708

17993567

Cloning of a novel gene encoding beta -1,3-xylosidase from a marine bacterium, Vibrio sp. strain XY-214, and characterization of the gene product

2008

Umemoto, Y.; Onishi, R.; Araki, T.

Appl. Environ. Microbiol.

305-308

677745

17216454

Substrate and product hydrolysis specificity in family 11 glycoside hydrolases: an analysis of Penicillium funiculosum and Penicillium griseofulvum xylanases

2007

Berrin, J.G.; Ajandouz, e.l.H.; Georis, J.; Arnaut, F.; Juge, N.

Appl. Microbiol. Biotechnol.

1001-1010

677960

17383610

Unprocessed barley aleurone endo-beta-1,4-xylanase X-I is an active enzyme

2007

Van Campenhout, S.; Pollet, A.; Bourgois, T.M.; Rombouts, S.; Beaugrand, J.; Gebruers, K.; De Backer, E.; Courtin, C.M.; Delcour, J.A.; Volckaert, G.

Biochem. Biophys. Res. Commun.

356

799-804

681466

18078955

Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases

2008

Vardakou, M.; Dumon, C.; Murray, J.W.; Christakopoulos, P.; Weiner, D.P.; Juge, N.; Lewis, R.J.; Gilbert, H.J.; Flint, J.E.

J. Mol. Biol.

375

1293-1305

682685

18065237

Expression of recombinant Bacillus licheniformis xylanase A in Pichia pastoris and xylooligosaccharides released from xylans by it

2008

Liu, M.Q.; Liu, G.F.

Protein Expr. Purif.

101-107

683277

16752410

Mode of action and properties of the beta-xylosidases from Talaromyces emersonii and Trichoderma reesei

2006

Rasmussen, L.E.; Sorensen, H.R.; Vind, J.; Vikso-Nielsen, A.

Biotechnol. Bioeng.

869-876

683995

Purification and characterization of a thermostable intracellular beta-xylosidase from the thermophilic fungus Sporotrichum thermophile

2006

Katapodis, P.; Nerinckx, W.; Claeyssens, M.; Christakopoulos, P.

Proc. Biochem.

2402-2409

695678

18688581

Hydrolytic properties of a hybrid xylanase and its parents

2009

Sun, J.Y.; Liu, M.Q.; Weng, X.Y.

Appl. Biochem. Biotechnol.

152

428-439

696842

18391461

Cloning, expression, and transglycosylation reaction of Paenibacillus sp. strain W-61 xylanase 1

2008

Watanabe, S.; Viet, D.N.; Kaneko, J.; Kamio, Y.; Yoshida, S.

Biosci. Biotechnol. Biochem.

951-958

696856

19352037

Substrate-binding site of family 11 xylanase from Bacillus firmus K-1 by molecular docking

2009

Jommuengbout, P.; Pinitglang, S.; Kyu, K.L.; Ratanakhanokchai, K.

Biosci. Biotechnol. Biochem.

833-839

699053

19147106

Purification and characterization of a thermostable xylanase from the brown-rot fungus Laetiporus sulphureus

2009

Lee, J.W.; Park, J.Y.; Kwon, M.; Choi, I.G.

J. Biosci. Bioeng.

107

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