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Information on EC 6.1.1.16 - cysteine-tRNA ligase and Organism(s) Escherichia coli and UniProt Accession P21888

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Escherichia coli
UNIPROT: P21888 not found.
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The taxonomic range for the selected organisms is: Escherichia coli
The enzyme appears in selected viruses and cellular organisms
Synonyms
cysteinyl-trna synthetase, cysrs, cars2, cars1, cysteinyl trna synthetase, class i cysrs, class i cysteinyl-trna synthetase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
class I CysRS
-
class I cysteinyl-tRNA synthetase
-
Cysteine translase
-
Cysteine--tRNA ligase
-
cysteinyl tRNA synthetase
-
Cysteinyl-transfer ribonucleate synthetase
-
Cysteinyl-transfer RNA synthetase
-
Cysteinyl-tRNA synthetase
-
Synthetase, cysteinyl-transfer ribonucleate
-
CysRS
Cysteine translase
Cysteine--tRNA ligase
Cysteinyl-transfer ribonucleate synthetase
Cysteinyl-transfer RNA synthetase
Cysteinyl-tRNA synthetase
Synthetase, cysteinyl-transfer ribonucleate
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
ATP + L-cysteine + tRNACys = AMP + diphosphate + L-cysteinyl-tRNACys
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
esterification
-
Aminoacylation
-
esterification
Aminoacylation
PATHWAY SOURCE
PATHWAYS
-
-
SYSTEMATIC NAME
IUBMB Comments
L-cysteine:tRNACys ligase (AMP-forming)
-
CAS REGISTRY NUMBER
COMMENTARY hide
37318-56-2
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + L-cysteine + tRNACys
AMP + diphosphate + L-cysteinyl-tRNACys
show the reaction diagram
AMP + diphosphate + L-cysteinyl-tRNACys
ATP + L-cysteine + tRNACys
show the reaction diagram
-
-
-
-
r
ATP + L-cysteine + tRNACys
AMP + diphosphate + L-cysteinyl-tRNACys
show the reaction diagram
ATP + L-cysteine + tRNACys mutant
AMP + diphosphate + L-cysteinyl-tRNACys mutant
show the reaction diagram
-
tRNA substrate is a tRNACys with mutation at the core tertiary Levitt pair from wild-type G15.C48 to mutant G15.G48, leading to a higher activity
-
?
ATP + L-cysteine + tRNACysA36G
AMP + diphosphate + L-cysteinyl-tRNACysA36G
show the reaction diagram
-
relative activity compared to wild-type tRNACys as a substrate: 0.01
-
-
?
ATP + L-cysteine + tRNACysC35U
AMP + diphosphate + L-cysteinyl-tRNACysC35U
show the reaction diagram
-
relative activity compared to wild-type tRNACys as a substrate: 0.005
-
-
?
ATP + L-cysteine + tRNACysG15C/C48G
AMP + diphosphate + L-cysteinyl-tRNACysG15C/C48G
show the reaction diagram
-
relative activity compared to wild-type tRNACys as a substrate: 0.03
-
-
?
ATP + L-cysteine + tRNACysG34C
AMP + diphosphate + L-cysteinyl-tRNACysG34C
show the reaction diagram
-
relative activity compared to wild-type tRNACys as a substrate: 0.001
-
-
?
ATP + L-cysteine + tRNACysU73G
AMP + diphosphate + L-cysteinyl-tRNACysU73G
show the reaction diagram
-
relative activity compared to wild-type tRNACys as a substrate: 0.00002
-
-
?
ATP + L-cysteine + tRNAGln duoble-mutant
AMP + diphosphate + L-cysteinyl-tRNAGln double-mutant
show the reaction diagram
-
tRNA substrate is a tRNAGln with introduced tRNACys indentitiy nucleotides at the acceptor and anticodon ends and a core tertiary Levitt pair equivalent to tRNAGln of G15.G48, poor activity
-
?
ATP + L-cysteine + tRNAGln mutant
AMP + diphosphate + L-cysteinyl-tRNAGln mutant
show the reaction diagram
-
tRNA substrate is a tRNAGln with introduced tRNACys indentitiy nucleotides at the acceptor and anticodon ends and a core tertiary Levitt pair equivalent to tRNACys of G15.C48
-
?
L-Cysteinyl-tRNACys
Cysteine thiolactone + ?
show the reaction diagram
-
deacylation in which nucleophilic sulfur of the side chain of cysteine in Cys-tRNACys attacks its carboxyl carbon, synthesis of Cys-tRNACys and cyclization of cysteine to thiolactone occur in a single active site
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
ATP + L-cysteine + tRNACys
AMP + diphosphate + L-cysteinyl-tRNACys
show the reaction diagram
ATP + L-cysteine + tRNACys
AMP + diphosphate + L-cysteinyl-tRNACys
show the reaction diagram
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Zn2+
1 ion bound at the base of the active site cleft, important for tRNA substrate specificity, single direct interaction with cysteine thiolate substrate
Co2+
-
can substitute for Zn2+
Zn2+
-
can be substituted by Co2+, tightly bound, 1 ion per enzyme molecule, bound at the base of the active site cleft, primary determinant of selectivity against non-cognate amino acids
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Cys-AMP
-
inhibits deacylation of Cys-tRNACys
cysteine
-
inhibits deacylation of Cys-tRNACys
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00047 - 2.4
L-cysteine
0.0005 - 0.0435
tRNACys
0.22 - 1.18
ATP
0.0072 - 3.61
L-cysteine
0.00035 - 0.095
tRNACys
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.001 - 2.5
L-cysteine
0.03 - 2.9
tRNACys
0.3 - 142
ATP
0.28 - 100
L-cysteine
0.017
L-Cysteinyl-tRNACys
-
-
0.005 - 6
tRNACys
additional information
additional information
-
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
3 - 1000
L-cysteine
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7
-
assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
37
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
-
although the nucleotides in tRNA required for aminoacylation are conserved in evolution, bacterial aminoacyl-transfer RNA synthetases are unable to acylate eukaryote-specific tRNA. Whereas Escherichia coli CysRS cannot acylate human tRNACys, the fusion of a eukaryote-specific domain of human CysRS overcomes the cross-species barrier in human tRNACys. In addition to enabling recognition of the sequence differences in the tertiary core of tRNACys, the fused eukaryotic domain redirects the specificity of Escherichia coli CysRS from the A37 present in bacterial tRNACys to the G37 in mammals. The accuracy of codon recognition on the ribosome is also highly sensitive to the A37G transition in tRNACys
metabolism
-
the enzyme plays a crucial role in endogenous cysteine hydropersulfide production and serves as the principal cysteine persulfide synthase in vivo
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
52280
-
x * 52280, deduced from nucleotide sequence
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
-
1 * 52000
additional information
the enzyme forms a class I ternary complex with EF-Tu, overview
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion method, crystals of enzyme bound to tRNACys at a resolution of 2.3 A
purified recombinant free enzyme or cysteine and ATP complexed enzyme, hanging-drop vapour diffusion method, 17°C, 0.001 ml protein solution: 6 mg/ml enzyme, 10 mM HEPES, pH 7.4, 50 mM NaCl, 1 mM DTT, 5 mM MgCl2, 5 mM ATP, 10 mM cysteine, plus equal volume of reservoir solution: 0.1 M sodium cacodylate, pH 6.5, 15-17% PEG 8000, 0.2 M magnesium acetate, 2% tert-butanol, 1-3 weeks, cysteine but not ATP is required for crystal growth, X-ray diffraction structure determination at 2.3-3.0 A resolution, and analysis
purified enzyme complexed with ATP and cysteine, hanging-drop vapour diffusion from ammonium sulfate precipitant containing solution, X-ray diffraction structure analysis at 2.7 A resolution
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
E354Q
the mutant has decreased kcat and Km values leading to an overall decrease in kcat/Km by 6.8fold relative to the wild type enzyme
E354Q/R427A
the mutant has a decreased kcat and an increased Km leading to an overall decrease in kcat/Km by 22fold relative to the wild type enzyme
H297A
the mutant has a decreased kcat and Km values leading to an overall decrease in kcat/Km by 3.4fold relative to the wild type enzyme
H404A/R42A
the mutant has a decreased kcat and an increased Km leading to an overall decrease in kcat/Km by 209fold relative to the wild type enzyme
H40A
the mutant has a decreased kcat and an increased Km leading to an overall decrease in kcat/Km by 204fold relative to the wild type enzyme
M294A
the mutant has decreased kcat and Km values leading to an overall decrease in kcat/Km by 3.7fold relative to the wild type enzyme
M294A/H297A
the mutant has a decreased kcat and Km values leading to an overall decrease in kcat/Km by 8.1fold relative to the wild type enzyme
M294A/R427A
the mutant has a decreased kcat and an increased Km leading to an overall decrease in kcat/Km by 370fold relative to the wild type enzyme
R427A
the mutant has a decreased kcat and an increased Km leading to an overall decrease in kcat/Km by 291fold relative to the wild type enzyme
R42A
the mutant has a decreased kcat and an increased Km leading to an overall decrease in kcat/Km by 1.5fold relative to the wild type enzyme
C209S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.0031% of the wild-type ratio
C28S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.012% of the wild-type ratio
C28S/C209S
C28S/C209S/H234N/E238Q
C36S/C214S/C244S
-
site-directed mutagenesis, activity is similar to the wild-type enzyme, but the affinity for cysteine binding is increased
DELTA288-461
-
the ratio of turnover number to Km-value for ATP in ATP-diphosphate exchange is 7% of the wild-type ratio
DELTA328-461
-
the ratio of turnover number to Km-value for ATP in ATP-diphosphate exchange is 0.32% of the wild-type ratio, aminoacylation of tRNACys is not detectable
E354Q
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 10% of the wild-type ratio
H206S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 60% of the wild-type ratio
H224N/H235N
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.042% of the wild-type ratio
H224S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 5.7% of the wild-type ratio
H234N/E238Q
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.0059% of the wild-type ratio
H234N/E238Q/H224N/H235N
-
aminoacylation of tRNACys is not detectable
H234S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.015% of the wild-type ratio
H235S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.38% of the wild-type ratio
H238S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 30% of the wild-type ratio
H256S
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 10% of the wild-type ratio
N351D
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.25% of the wild-type ratio
V27E
-
mutation does not affect the discrimination of the enzyme for serine. 4fold increase in Km-value for cysteine and 9fold reduction of turnover number for ATP
W205F
-
the ratio of turnover number to Km-value of aminoacylation of tRNACys is 0.55% of the wild-type ratio
W205Y
-
site-directed mutagenesis, highly reduced activity, highly increased Km for cysteine
additional information
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
Talon resin column chromatography
Ni-NTA agarose column chromatography
-
partial
-
recombinant from overexpressing strain JM109
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli BL21(DE3) cells
overexpression in strain JM109
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Eriani, G.; Dirheimer, G.; Gangloff, J.
Cysteinyl-tRNA synthetase: determination of the last E. coli aminoacyl-tRNA synthetase primary structure
Nucleic Acids Res.
19
265-269
1991
Escherichia coli
Manually annotated by BRENDA team
Jakubowski, H.
Editing function of Escherichia coli cysteinyl-tRNA synthetase: cyclization of cysteine to cysteine thiolactone
Nucleic Acids Res.
22
1155-1160
1994
Escherichia coli
Manually annotated by BRENDA team
Komatsoulis, G.A.; Abelson, J.
Recognition of tRNACys by Escherichia coli cysteinyl-tRNA synthetase [published erratum appears in Biochemistry 1993 Dec 7;32(48):13374]
Biochemistry
32
7435-7444
1993
Escherichia coli
Manually annotated by BRENDA team
Bohman, K.; Isaksson, L.A.
Temperature-sensitive mutants in cysteinyl-tRNA ligase of E. coli K-12
Mol. Gen. Genet.
176
53-55
1979
Escherichia coli
Manually annotated by BRENDA team
Fersht, A.R.; Dingwall, C.
Cysteinyl-tRNA synthetase from Escherichia coli does not need an editing mechanism to reject serine and alanine. High binding energy of small groups in specific molecular interactions
Biochemistry
18
1245-1249
1979
Escherichia coli
Manually annotated by BRENDA team
McCorquodale, D.J.
The separation and partial purification of aminoacyl-RNA synthetases from Escherichia coli
Biochim. Biophys. Acta
91
541-548
1964
Escherichia coli
Manually annotated by BRENDA team
Newberry, K.J.; Kohn, J.; Hou, Y.M.; Perona, J.J.
Crystallization and preliminary diffraction analysis of Escherichia coli cysteinyl-tRNA synthetase
Acta Crystallogr. Sect. D
55
1046-1047
1999
Escherichia coli
Manually annotated by BRENDA team
Newberry, K.J.; Hou, Y.M.; Perona, J.J.
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
EMBO J.
21
2778-2787
2002
Escherichia coli (P21888), Escherichia coli
Manually annotated by BRENDA team
Sherlin, L.D.; Bullock, T.L.; Newberry, K.J.; Lipman, R.S.; Hou, Y.M.; Beijer, B.; Sproat, B.S.; Perona, J.J.
Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases
J. Mol. Biol.
299
431-446
2000
Escherichia coli
Manually annotated by BRENDA team
Zhang, C.M.; Christian, T.; Newberry, K.J.; Perona, J.J.; Hou, Y.M.
Zinc-mediated amino acid discrimination in cysteinyl-tRNA synthetase
J. Mol. Biol.
327
911-917
2003
Escherichia coli
Manually annotated by BRENDA team
Zhang, C.M.; Hou, Y.M.
Domain-domain communication for tRNA aminoacylation: the importance of covalent connectivity
Biochemistry
44
7240-7249
2005
Escherichia coli
Manually annotated by BRENDA team
Ruan, B.; Nakano, H.; Tanaka, M.; Mills, J.A.; DeVito, J.A.; Min, B.; Low, K.B.; Battista, J.R.; Soll, D.
Cysteinyl-tRNA(Cys) formation in Methanocaldococcus jannaschii: the mechanism is still unknown
J. Bacteriol.
186
8-14
2004
Escherichia coli
Manually annotated by BRENDA team
Shitivelband, S.; Hou, Y.M.
Breaking the stereo barrier of amino acid attachment to tRNA by a single nucleotide
J. Mol. Biol.
348
513-521
2005
Escherichia coli
Manually annotated by BRENDA team
Hauenstein, S.; Zhang, C.M.; Hou, Y.M.; Perona, J.J.
Shape-selective RNA recognition by cysteinyl-tRNA synthetase
Nat. Struct. Mol. Biol.
11
1134-1141
2004
Escherichia coli (P21888), Escherichia coli
Manually annotated by BRENDA team
Zhang, C.M.; Perona, J.J.; Ryu, K.; Francklyn, C.; Hou, Y.M.
Distinct kinetic mechanisms of the two classes of aminoacyl-tRNA synthetases
J. Mol. Biol.
361
300-311
2006
Escherichia coli (P21888)
Manually annotated by BRENDA team
Zhang, C.M.; Liu, C.; Slater, S.; Hou, Y.M.
Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys)
Nat. Struct. Mol. Biol.
15
507-514
2008
Escherichia coli
Manually annotated by BRENDA team
Liu, C.; Gamper, H.; Liu, H.; Cooperman, B.S.; Hou, Y.M.
Potential for interdependent development of tRNA determinants for aminoacylation and ribosome decoding
Nat. Commun.
2
329
2011
Escherichia coli
Manually annotated by BRENDA team
Ghosh, A.; Sakaguchi, R.; Liu, C.; Vishveshwara, S.; Hou, Y.M.
Allosteric communication in cysteinyl tRNA synthetase: a network of direct and indirect readout
J. Biol. Chem.
286
37721-37731
2011
Escherichia coli (P21888)
Manually annotated by BRENDA team
Akaike, T.; Ida, T.; Wei, F.Y.; Nishida, M.; Kumagai, Y.; Alam, M.M.; Ihara, H.; Sawa, T.; Matsunaga, T.; Kasamatsu, S.; Nishimura, A.; Morita, M.; Tomizawa, K.; Nishimura, A.; Watanabe, S.; Inaba, K.; Shima, H.; Tanuma, N.; Jung, M.; Fujii, S.; Watanabe, Y.; Ohmuraya, M.; Nagy, P.; Feelisch, M.; Fukuto,
Cysteinyl-tRNA synthetase governs cysteine polysulfidation and mitochondrial bioenergetics
Nat. Commun.
8
1177
2017
Escherichia coli, Homo sapiens, Mus musculus
Manually annotated by BRENDA team