Any feedback?
Please rate this page
(enzyme.php)
(0/150)

BRENDA support

BRENDA Home
show all | hide all No of entries

Information on EC 4.6.1.13 - phosphatidylinositol diacylglycerol-lyase and Organism(s) Bacillus thuringiensis and UniProt Accession P08954

for references in articles please use BRENDA:EC4.6.1.13
Please wait a moment until all data is loaded. This message will disappear when all data is loaded.
EC Tree
IUBMB Comments
This enzyme is bacterial. Activity is also found in animals, but this activity is due to the presence of EC 3.1.4.11, phosphoinositide phospholipase C.
Specify your search results
Select one or more organisms in this record: ?
This record set is specific for:
Bacillus thuringiensis
UNIPROT: P08954
Show additional data
Do not include text mining results
Include (text mining) results
Include results (AMENDA + additional results, but less precise)
Word Map
The taxonomic range for the selected organisms is: Bacillus thuringiensis
The enzyme appears in selected viruses and cellular organisms
Synonyms
phosphatidylinositol-specific plc, pi-phospholipase c, 1-phosphatidylinositol phosphodiesterase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
phosphatidylinositol-specific phospholipase C
-
1-phosphatidyl-D-myo-inositol inositolphosphohydrolase (cyclic-phosphate-forming)
-
-
-
-
1-phosphatidylinositol phosphodiesterase
-
-
-
-
monophosphatidylinositol phosphodiesterase
-
-
-
-
Phosphatidylinositol diacylglycerol-lyase
-
-
-
-
phosphatidylinositol phosphodiesterase
-
-
-
-
phosphatidylinositol phospholipase C
-
-
-
-
phosphatidylinositol-specific phospholipase C
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
1-phosphatidyl-1D-myo-inositol = 1D-myo-inositol 1,2-cyclic phosphate + 1,2-diacyl-sn-glycerol
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
P-O bond cleavage
-
-
-
-
PATHWAY SOURCE
PATHWAYS
SYSTEMATIC NAME
IUBMB Comments
1-phosphatidyl-1D-myo-inositol 1,2-diacyl-sn-glycerol-lyase (1D-myo-inositol-1,2-cyclic-phosphate-forming)
This enzyme is bacterial. Activity is also found in animals, but this activity is due to the presence of EC 3.1.4.11, phosphoinositide phospholipase C.
CAS REGISTRY NUMBER
COMMENTARY hide
37288-19-0
-
63551-76-8
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
1-phosphatidyl-1D-myo-inositol
1D-myo-inositol 1,2-cyclic phosphate + 1,2-diacyl-sn-glycerol
show the reaction diagram
-
-
-
?
phosphatidylinositol
diacylglycerol + myo-inositol 1,2-cyclic phosphate
show the reaction diagram
-
-
-
?
1-phosphatidyl-1D-myo-inositol
1D-myo-inositol 1,2-cyclic phosphate + diacylglycerol
show the reaction diagram
lysophosphatidylinositol + H2O
?
show the reaction diagram
-
-
-
-
?
phosphatidylinositol
diacylglycerol + myo-inositol 1,2-cyclic phosphate
show the reaction diagram
-
-
-
-
?
phosphatidylinositol + H2O
diacylglycerol + myo-inositol 1,2-cyclic phosphate
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
1-phosphatidyl-1D-myo-inositol
1D-myo-inositol 1,2-cyclic phosphate + 1,2-diacyl-sn-glycerol
show the reaction diagram
-
-
-
?
additional information
?
-
-
the enzyme exhibits cytotoxicity against some cultivated cells
-
-
?
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Cl-
-
1 M, 2-3fold activation of wild-type PI-PLC
additional information
-
Ca2+-independent
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Ca2+
-
above 1 mM
KCl
-
above 10 mM
Mg2+
-
above 1 mM
myo-inositol
NaCl
-
above 1 mM
Zn2+
-
above 1 mM
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
phosphatidylcholine
-
deoxycholate
-
stimulates
diheptanoyl phosphatidylcholine
-
activates
dimethylformamide
-
water-miscible, enhances phosphotransferase activity
Dimethylsulfoxide
-
water-miscible, enhances phosphotransferase activity
Isopropanol
phosphatidic acid
-
binding to nonsubstrate anionic interfaces enhances the catalytic activity of PI-PLC, interfacial binding studies, activation mechanism
phosphatidylcholine
phosphatidylglycerol
-
binding to nonsubstrate anionic interfaces enhances the catalytic activity of PI-PLC, interfacial binding studies, activation mechanism
phosphatidylmethanol
-
binding to nonsubstrate anionic interfaces enhances the catalytic activity of PI-PLC, interfacial binding studies, activation mechanism
phosphatidylserine
-
binding to nonsubstrate anionic interfaces enhances the catalytic activity of PI-PLC, interfacial binding studies, activation mechanism
Triton X-100
-
stimulates
Tween 20
-
slight stimulation
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
additional information
additional information
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.2
mutant Y246S/Y247S/Y248S, with 8 mM cIP as substrate
0.4
mutant Y246S/Y247S/Y248S/Y251S, with 8 mM cIP as substrate
0.6
mutant Y247S/Y251S, with 8 mM cIP as substrate
0.8
mutant Y246S/Y247S/Y248S/Y251S, with 8 mM cIP as substrate, in the presence of 5 mM diheptanoylphosphatidylcholine
1.6
mutant Y246S/Y247S/Y248S/Y251S, with phosphatidylinositol as substrate, in the presence of 2 mM POPC (for the small unilamellar vesicles)
112
mutant Y246S/Y247S/Y248S/Y251S, with phosphatidylinositol as substrate, in the presence of 32 mM diheptanoylphosphatidylcholine
2.1
mutant Y246S/Y247S/Y248S, with phosphatidylinositol as substrate, in the presence of 2 mM POPC (for the small unilamellar vesicles)
2.3
wild-type, with 8 mM cIP as substrate
2.9
mutant Y246S/Y247S/Y248S, with 8 mM cIP as substrate, in the presence of 5 mM diheptanoylphosphatidylcholine
239
mutant Y247S/Y251S, with phosphatidylinositol as substrate, in the presence of 16 mM Triton X-100
301
mutant Y246S/Y247S/Y248S, with phosphatidylinositol as substrate, in the presence of 32 mM diheptanoylphosphatidylcholine
375
wild-type, with phosphatidylinositol as substrate, in the presence of 16 mM Triton X-100
41
mutant Y247S/Y251S, with 8 mM cIP as substrate, in the presence of 5 mM diheptanoylphosphatidylcholine
560
wild-type, with phosphatidylinositol as substrate, in the presence of 32 mM diheptanoylphosphatidylcholine
6.7
mutant Y247S/Y251S, with phosphatidylinositol as substrate, in the presence of 2 mM POPC (for the small unilamellar vesicles)
62
mutant Y246S/Y247S/Y248S/Y251S, with phosphatidylinositol as substrate, in the presence of 16 mM Triton X-100
670
mutant Y247S/Y251S, with phosphatidylinositol as substrate, in the presence of 32 mM diheptanoylphosphatidylcholine
73
wild-type, with 8 mM cIP as substrate, in the presence of 5 mM diheptanoylphosphatidylcholine
9.5
wild-type, with phosphatidylinositol as substrate, in the presence of 2 mM POPC (for the small unilamellar vesicles)
98
mutant Y246S/Y247S/Y248S, with phosphatidylinositol as substrate, in the presence of 16 mM Triton X-100
1630
-
wild-type, for phosphatidylinositol/diC7-phosphatidylcholine, in 50 mM HEPES buffer, pH 7.5, with 1 mM EDTA, 5 mM dithiothreitol, and 0.1 mg/ml bovine serum albumin, at 28°C
401
-
W47I mutant PI-PLC, phosphotransferase activity
556
-
wild-type PI-PLC, phosphotransferase activity
558
-
W47F mutant PI-PLC, phosphotransferase activity
658
-
W242F mutant PI-PLC, phosphotransferase activity
684
-
W242I mutant PI-PLC, phosphotransferase activity
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6 - 9
-
wild-type PI-PLC, in the absence of 1 M Cl-
7 - 8
-
wild-type PI-PLC, in the presence of 1 M Cl-
7.1
-
cleavage of phosphatidylinositol solubilized in diheptanoyl phosphatidylcholine
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8
-
cleavage of phosphatidylinositol solubilized in diheptanoyl phosphatidylcholine, drop in activity around pH 8, consistent with the drop in binding affinity for activating surfaces
additional information
-
pH-dependence study of wild-type and mutant PI-PLC
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.4
-
theoretical pI
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
recombinant PI-PLC, expressed in Escherichia coli BL21
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
the enzyme is a virulence factor
physiological function
-
for highly anionic membranes, but not phosphatidylcholine-rich vesicles, binding correlates well with relative activity
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
PLC_BACTU
329
1
38091
Swiss-Prot
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
34800
x * 34800, calculated from amino acid sequence
23000
-
gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 34800, calculated from amino acid sequence
monomer
although small amounts of dimer have been noted previously
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
mutant Y247S/Y251S in the absence and presence of myo-inositol as well as mutant Y246S/Y247S/Y248S/Y251S, both mutant proteins crystallize as monomers, are very similar to one another, and have no change in the active site region
wild-type and D274N mutant PI-PLC
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
G48A
single mutant
I43A
single mutant
I43W
single mutant
I43W/W47I
are made by introducing the second mutation in the gene coding for a single mutant
K44E
single mutant
L39A
single mutant
L39A/V46A
are made by introducing the second mutation in the gene coding for a single mutant
P245Y
the mutant shows reduced activity and membrane affinity
P42G
single mutant
Q45A
single mutant
V46A
single mutant
W47A/W242A
dimeric mutant, which is unable to bind to phosphatidycholine
Y246A
the variant shows significant membrane binding defects
Y246A/Y247A
the variant shows significant membrane binding defects
Y246S/Y247S/Y248S
less active toward phosphatidylinositol solubilized in diheptanoylphosphatidylcholine and when changing the detergent matrix to Triton X-100, as the wild-type
Y246S/Y247S/Y248S/Y251S
less active toward phosphatidylinositol solubilized in diheptanoylphosphatidylcholine and when changing the detergent matrix to Triton X-100, as the wild-type
Y247A
the variant shows significant membrane binding defects
Y247S/Y251S
exhibits specific activity toward phosphatidylinositol solubilized in diheptanoylphosphatidylcholine comparable to wild-type. Reduced specific activity, when changing the detergent matrix to Triton X-100
Y86A/Y88A
the mutations decrease membrane affinity for the enzyme
D274A
-
catalytic aspartate mutation, 0.005% of wild-type activity, no activation by exogenous anions
D274E
-
catalytic aspartate mutation, 50% of wild-type activity, no activation by chloride ions
D274G
-
catalytic aspartate mutation, activation of mutant PI-PLC by exogenous anions, e.g. Cl-
D274N
-
catalytic aspartate mutation, 40fold decreased activity compared with wild-type enzyme, no activation by chloride ions
G238W
-
study of the kinetic activation by diheptanoyl phosphatidylcholine and water-miscible isopropanol
G238W/W242A
-
double mutant with enhanced activation and affinity for phosphatidylcholine interfaces above that of wild-type PI-PLC
G48W/W47A
-
double mutant, study of the kinetic activation by diheptanoyl phosphatidylcholine and water-miscible isopropanol
H32A
-
active site mutant, but binds to pure phosphatidylglycerol and pure phosphatidylcholine small unilamellar vesicles with essentially the same affinities as mutant N168C
I43W/W47A
-
double mutant with recovered kinetic interfacial activation, lower specific activity than wild-type PI-PLC
K44E
-
0.44% relative activity. Has dramatically diminished affinity for phosphatidylglycerol-rich vesicles and slightly reduced affinity for phosphatidylcholine-rich vesicles
M49W/W47A
-
double mutant, study of the kinetic activation by diheptanoyl phosphatidylcholine and water-miscible isopropanol
N168C
-
1% relative activity
N243W/W242A
-
double mutant, study of the kinetic activation by diheptanoyl phosphatidylcholine and water-miscible isopropanol
Q45W/W47A
-
double mutant, study of the kinetic activation by diheptanoyl phosphatidylcholine and water-miscible isopropanol
R69D
-
active site mutant with low specific activity towards phosphatidylinositol, interfacial binding study
S236W/W242A
-
double mutant, study of the kinetic activation by diheptanoyl phosphatidylcholine and water-miscible isopropanol
W178A
-
mutant with reduced stability and specific activity, study of kinetic activation by micellar phosphatidylcholine
W242A
W242F
-
kinetic analysis, binding studies to phosphatidylcholine vesicles
W242I
-
kinetic analysis, binding studies to phosphatidylcholine vesicles
W280A
-
mutant with reduced stability, study of kinetic activation by micellar phosphatidylcholine
W47A/W242A
W47F
-
kinetic analysis, binding studies to phosphatidylcholine vesicles
W47I
-
kinetic analysis, binding studies to phosphatidylcholine vesicles
Y246S/Y247S/Y248S/N168C
-
impaired phosphatidylcholine binding, but still binds most tightly to mixed lipid vesicles. Has similar affinities for pure phosphatidylglycerol vesicles than mutant N168C, while the apparent Kd of for pure phosphatidylcholine vesicles is ca. 3 orders of magnitude higher than that of mutant N168C. Apparent Kd toward small unilamellar vesicles is about 1000fold higher than that of mutant N168C
Y88A
-
2.92% relative activity, mutation near the lipid binding region. Is an extremely active enzyme whose specific activity is 3fold higher than recombinant PI-PLC, binds more weakly to small unilamellar vesicles than wild-type
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
-
some thermal unfolding of PI-PLC occurs
30
-
Tm-value in presence of 30% isopropanol, myo-inositol enhances thermostability in isopropanol
41.5
-
Tm-value, pH 8, W178A mutant PI-PLC
47
-
Tm-value, pH 8, W280A mutant PI-PLC
54.6
-
Tm-value, pH 8, W47A/W242A double mutant PI-PLC
56.2
-
Tm-value, pH 8, W242A mutant PI-PLC
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
myo-inositol stabilizes
-
ORGANIC SOLVENT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
isopropanol
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
Q-Sepharose column chromatography and phenyl Sepharose column chromatography
Q-sepharose fast-flow column and phenyl-Sepharose column, monitored by SDS-PAGE
wild-type and mutants, by gel filtration
recombinant PI-PLC
-
recombinant wild-type and mutant PI-PLC
-
wild-type and mutant PI-PLC
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli BL21-CodonPlus (DE3)-RIL cells
transformed into Escherichia coli BL21-Codonplus (DE3)-RIL cells
wild-type and mutants overexpressed in Escherichia coli
expression in Escherichia coli MM294
-
expression in Escherichia coli, construction of four vectors for high-level expression
-
overexpressed in Escherichia coli
-
overexpression in Escherichia coli BL21
-
wild-type and mutant PI-PLC, expression in Escherichia coli BL21
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
analysis
-
use of the enzyme and specific antibodies for the enzyme for the examination of the growth inhibition, morphological change and ectoenzyme release of the LLC-PK1 cells from pig, effective for the investigation of the function of the glycosyl-phosphatidylinositol-anchor protein
molecular biology
-
enzyme is used as a tool in the studies of GPI-anchored proteins
additional information
-
optimization of PI-PLC binding to substrate-containing vesicles is a balancing act between anchoring the protein in the correct conformation and orientation while also allowing it to dissociate in order to find substrate phospholipids or GPI-anchored proteins by scooting and/or hopping
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Taguchi, R.; Asahi, Y.; Ikezawa, H.
Purification and properties of phosphatidylinositol-specific phospholipase C of Bacillus thuringiensis
Biochim. Biophys. Acta
619
48-57
1980
Bacillus thuringiensis
Manually annotated by BRENDA team
Koke, J.A.; Yang, M.; Henner, D.J.; Volwerk, J.J.; Griffith, O.H.
High-level expression in Escherichia coli and rapid purification of phosphatidylinositol-specific phospholipase C from Bacillus cereus and Bacillus thuringiensis
Protein Expr. Purif.
2
51-58
1991
Bacillus cereus, Bacillus thuringiensis
Manually annotated by BRENDA team
Itami, C.; Kimura, Y.; Taguchi, R.; Ikezawa, H.; Nakayashi, T.
Growth inhibition, morphological change, and ectoenzyme release of LLC-PK1 cells by phosphatidylinositol-specific phospholipase C of Bacillus thuringiensis
Biosci. Biotechnol. Biochem.
61
776-781
1997
Bacillus thuringiensis
Manually annotated by BRENDA team
Wehbi, H.; Feng, J.; Kolbeck, J.; Ananthanarayanan, B.; Cho, W.; Roberts, M.F.
Investigating the interfacial binding of bacterial phosphatidylinositol-specific phospholipase C
Biochemistry
42
9374-9382
2003
Bacillus thuringiensis
Manually annotated by BRENDA team
Wehbi, H.; Feng, J.; Roberts, M.F.
Water-miscible organic cosolvents enhance phosphatidylinositol-specific phospholipase C phosphotransferase as well as phosphodiesterase activity
Biochim. Biophys. Acta
1613
15-27
2003
Bacillus thuringiensis
Manually annotated by BRENDA team
Feng, J.; Wehbi, H.; Roberts, M.F.
Role of tryptophan residues in interfacial binding of phosphatidylinositol-specific phospholipase C
J. Biol. Chem.
277
19867-19875
2002
Bacillus thuringiensis
Manually annotated by BRENDA team
Feng, J.; Bradley, W.D.; Roberts, M.F.
Optimizing the interfacial binding and activity of a bacterial phosphatidylinositol-specific phospholipase C
J. Biol. Chem.
278
24651-24657
2003
Bacillus thuringiensis
Manually annotated by BRENDA team
Zhao, L.; Liao, H; Tsai, M.D.
The catalytic role of aspartate in a short strong hydrogen bond of the Asp274-His32 catalytic dyad in phosphatidylinositol-specific phospholipase C can be substituted by a chloride-ion
J. Biol. Chem.
279
31995-32000
2004
Bacillus thuringiensis
Manually annotated by BRENDA team
Ikezawa, H.
Bacterial phosphatidylinositol-specific phospholipase C as membrane-attacking agents and tools for research on GPI-anchored proteins
J. Toxicol. Toxin Rev.
23
479-508
2004
Bacillus cereus, Bacillus thuringiensis, Listeria monocytogenes, Staphylococcus aureus
-
Manually annotated by BRENDA team
Guo, S.; Zhang, X.; Seaton, B.A.; Roberts, M.F.
Role of helix B residues in interfacial activation of a bacterial phosphatidylinositol-specific phospholipase C
Biochemistry
47
4201-4210
2008
Bacillus thuringiensis (P08954)
Manually annotated by BRENDA team
Pu, M.; Roberts, M.F.; Gershenson, A.
Fluorescence correlation spectroscopy of phosphatidylinositol-specific phospholipase C monitors the interplay of substrate and activator lipid binding
Biochemistry
48
6835-6845
2009
Bacillus thuringiensis
Manually annotated by BRENDA team
Shi, X.; Shao, C.; Zhang, X.; Zambonelli, C.; Redfield, A.G.; Head, J.F.; Seaton, B.A.; Roberts, M.F.
Modulation of Bacillus thuringiensis phosphatidylinositol-specific phospholipase C activity by mutations in the putative dimerization interface
J. Biol. Chem.
284
15607-15618
2009
Bacillus thuringiensis (P08954)
Manually annotated by BRENDA team
Cheng, J.; Karri, S.; Grauffel, C.; Wang, F.; Reuter, N.; Roberts, M.F.; Wintrode, P.L.; Gershenson, A.
Does changing the predicted dynamics of a phospholipase C alter activity and membrane binding?
Biophys. J.
104
185-195
2013
Bacillus thuringiensis (P08954), Bacillus thuringiensis N168C (P08954)
Manually annotated by BRENDA team
Grauffel, C.; Yang, B.; He, T.; Roberts, M.F.; Gershenson, A.; Reuter, N.
Cation-pi interactions as lipid-specific anchors for phosphatidylinositol-specific phospholipase C
J. Am. Chem. Soc.
135
5740-5750
2013
Bacillus thuringiensis (P08954), Bacillus thuringiensis N168C (P08954)
Manually annotated by BRENDA team