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Information on EC 4.2.2.20 - chondroitin-sulfate-ABC endolyase and Organism(s) Proteus vulgaris and UniProt Accession P59807

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EC Tree
     4 Lyases
         4.2 Carbon-oxygen lyases
             4.2.2 Acting on polysaccharides
                4.2.2.20 chondroitin-sulfate-ABC endolyase
IUBMB Comments
This enzyme degrades a variety of glycosaminoglycans of the chondroitin-sulfate- and dermatan-sulfate type. Chondroitin sulfate, chondroitin-sulfate proteoglycan and dermatan sulfate are the best substrates but the enzyme can also act on hyaluronan at a much lower rate. Keratan sulfate, heparan sulfate and heparin are not substrates. In general, chondroitin sulfate (CS) and dermatan sulfate (DS) chains comprise a linkage region, a chain cap and a repeat region. The repeat region of CS is a repeating disaccharide of glucuronic acid (GlcA) and N-acetylgalactosamine (GalNAc) [-4)GlcA(beta1-3)GalNAc(beta1-]n, which may be O-sulfated on the C-4 and/or C-6 of GalNAc and C-2 of GlcA. GlcA residues of CS may be epimerized to iduronic acid (IdoA) forming the repeating disaccharide [-4)IdoA(alpha1-3)GalNAc(beta1-]n of DS. Both the concentrations and locations of sulfate-ester substituents vary with glucosaminoglycan source . The related enzyme EC 4.2.2.21, chondroitin-sulfate-ABC exolyase, has the same substrate specificity but removes disaccharide residues from the non-reducing ends of both polymeric chondroitin sulfates and their oligosaccharide fragments produced by EC 4.2.2.20 .
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Proteus vulgaris
UNIPROT: P59807
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Word Map
The taxonomic range for the selected organisms is: Proteus vulgaris
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota
Synonyms
chondroitinase abc, chabc, chondroitinase abc i, ch'ase abc, ch'ase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
chondroitinase ABC I
-
Ch'ase ABC
-
-
ChS ABC lyase I
-
-
EC 4.2.2.4
-
formerly
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
Endolytic cleavage of (1->4)-beta-galactosaminic bonds between N-acetylgalactosamine and either D-glucuronic acid or L-iduronic acid to produce a mixture of Delta4-unsaturated oligosaccharides of different sizes that are ultimately degraded to Delta4-unsaturated tetra- and disaccharides
show the reaction diagram
related enzyme EC 4.2.2.21
-
PATHWAY SOURCE
PATHWAYS
-
-, -
SYSTEMATIC NAME
IUBMB Comments
chondroitin-sulfate-ABC endolyase
This enzyme degrades a variety of glycosaminoglycans of the chondroitin-sulfate- and dermatan-sulfate type. Chondroitin sulfate, chondroitin-sulfate proteoglycan and dermatan sulfate are the best substrates but the enzyme can also act on hyaluronan at a much lower rate. Keratan sulfate, heparan sulfate and heparin are not substrates. In general, chondroitin sulfate (CS) and dermatan sulfate (DS) chains comprise a linkage region, a chain cap and a repeat region. The repeat region of CS is a repeating disaccharide of glucuronic acid (GlcA) and N-acetylgalactosamine (GalNAc) [-4)GlcA(beta1-3)GalNAc(beta1-]n, which may be O-sulfated on the C-4 and/or C-6 of GalNAc and C-2 of GlcA. GlcA residues of CS may be epimerized to iduronic acid (IdoA) forming the repeating disaccharide [-4)IdoA(alpha1-3)GalNAc(beta1-]n of DS. Both the concentrations and locations of sulfate-ester substituents vary with glucosaminoglycan source [5]. The related enzyme EC 4.2.2.21, chondroitin-sulfate-ABC exolyase, has the same substrate specificity but removes disaccharide residues from the non-reducing ends of both polymeric chondroitin sulfates and their oligosaccharide fragments produced by EC 4.2.2.20 [4].
CAS REGISTRY NUMBER
COMMENTARY hide
9024-13-9
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
chondroitin 4-sulfate
?
show the reaction diagram
chondroitin 6-sulfate
?
show the reaction diagram
-
-
-
?
chondroitin sulfate A
?
show the reaction diagram
-
-
-
?
dermatan sulfate
?
show the reaction diagram
-
-
-
?
chondroitin
?
show the reaction diagram
-
32% of the rate with chondroitin-6-sulfate
-
-
?
chondroitin 4-sulfate
?
show the reaction diagram
chondroitin 6-sulfate
unsaturated chondroitin 6-sulfate disaccharide
show the reaction diagram
-
-
-
-
?
chondroitin sulfate
?
show the reaction diagram
-
-
-
-
?
chondroitin sulfate C
?
show the reaction diagram
-
-
-
-
?
chondroitin sulfate D
?
show the reaction diagram
-
70% of the rate with chondroitin-6-sulfate
-
-
?
chondroitin sulfate E
?
show the reaction diagram
-
23% of the rate with chondroitin-6-sulfate
-
-
?
chondroitin sulfate proteoglycan
?
show the reaction diagram
-
70% of the rate with chondroitin-6-sulfate
-
-
?
dermatan sulfate
?
show the reaction diagram
hyaluronan
?
show the reaction diagram
-
1% of the rate with chondroitin-6-sulfate
-
-
?
additional information
?
-
-
no substrate: keratan sulfate, heparin, heparan sulfate. Enzyme produces a wide range of differently sized oligosaccharides. After exhaustive degradation, end products are tetra- and disaccharides
-
-
?
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Cu2+
-
1 mM, 80% inhibition
Fe2+
-
1 mM, 80% inhibition
Ni2+
-
1 mM, 80% inhibition
Zn2+
-
1 mM, complete inhibition
additional information
-
not inhibitory: Ca2+, Mg2+, Ba2+, Mn2+
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.031 - 0.05
chondroitin 4-sulfate
0.055
chondroitin 6-sulfate
pH 6.8, 37°C
0.073
chondroitin sulfate A
recombinant protein fused to maltose-binding protein, pH 7.4, 50°C
0.094
dermatan sulfate
pH 6.8, 37°C
0.066
chondroitin-6-sulfate
-
pH 8.0, 37°C
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
69.7 - 89
chondroitin 4-sulfate
100
chondroitin 6-sulfate
pH 6.8, 37°C
587
chondroitin sulfate A
recombinant protein fused to maltose-binding protein, pH 7.4, 50°C
48.5
dermatan sulfate
pH 6.8, 37°C
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1600 - 2800
chondroitin 4-sulfate
1800
chondroitin 6-sulfate
pH 6.8, 37°C
1517
dermatan sulfate
pH 6.8, 37°C
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
3180
recombinant protein fused to maltose-binding protein, pH 7.4, 50°C
310
-
pH 8.0, 37°C
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.2
-
assay at
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.7
degeneration of protein above
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8
-
and 8.25, isoelectric focusing
8.25
-
and 8.0, isoelectric focusing
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
CABC1_PROVU
1021
0
115092
Swiss-Prot
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Q140A
mutation improves both activity and thermal stability of the enzyme, and additionally improves resistance to trypsin degradation
Q140G
mutation improves both activity and thermal stability of the enzyme, and additionally improves resistance to trypsin degradation
Q140N
mutation reduces the enzyme activity and destabilizes
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
30
210 min, 78% residual activity
47
melting temperature
49
melting temperature, presence of 20% glycerol
52
melting temperature, presence of 1 M sorbitol
54
melting temperature, presence of 1 M trehalose
40
-
30 min, 47% loss of activity
additional information
-
in commercial preparations, there is a significant effect of lot and time on thermal stability. Average enzymatic activity is significantly decreased after 1 and 3 days at 39°C and 37°C, resp. The average activity seen after 1 day is significantly different between the two temperatures. Addition of bovine serum albumin preserves enzymatic activity at 1 day, but not 3 days, at 39°C
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
the enzyme catalytic activity and intrinsic fluorescence intensity increase in the presence of cosolvents glycerol, sorbitol and trehalose whereas no considerable conformational changes are observed in far-UV CD spectra. In the presence of trehalose a significant increase in meltin temperature is observed.
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-18°C, 3 days, complete loss of activity
25°C, 17 days, complete loss of activity, in presence of 1 M trehalose 85% residual activity after 21 days
37°C, 10 days, presence of 1 M trehalose, 20% residual activity
4°C, 21 days, 80% residual activity
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant protein
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in HEK-293 cell
fusion protein with maltose-binding protein, expression in Escherichia coli
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
when expressed in a mammalian cell, residues N675, N515, N345, N338 and N282 are all glycosylated which prevents secretion of functional enzyme. Directed mutagenesis of selected N-glycosylation sites allows efficient secretion of active chondroitinase. Mutation if residue N751 renders the enzyme inactive. Mutations required for efficient secretion of active enzyme are those eliminating glycosylation at N282, N336, N345, and N515, and mutation of N675 increases the activity still further
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
biotechnology
-
bond strength of two etch-and-rinse adhesives to chondroitinase ABC treated dentin is investigated. Human extracted molars are treated with chondroitinase ABC. Increased mean values of microtensile bond strength and reduced nanoleakage expression are shown for both adhesives after chondroitinase ABC treatment of the dentin surface. This study supports the hypothesis that adhesion can be enhanced by removal of chondroitin 4/6 sulfate and dermatan sulfate, probably due to a reduced amount of water content and enlarged interfibrillar spaces
medicine
molecular biology
-
glycosaminoglycans are extracted from cooked haddock muscle. Reverse phase chromatography and digestion with chondroitinase ABC (Chase) is used. FeCl3 is mixed with the purified glycosaminoglycans, and Fe uptake is measured by ferritin formation using an in vitro digestion/Caco-2 cell model. The identificative analyses suggest that chondroitin/dermatan sulfate-related structures promote Fe uptake by Caco-2 cells
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Hamai, A.; Hashimoto, N.; Mochizuki, H.; Kato, F.; Makiguchi, Y.; Horie, K.; Suzuki, S.
Two distinct chondroitin sulfate ABC lyases. An endoeliminase yielding tetrasaccharides and an exoeliminase preferentially acting on oligosaccharides
J. Biol. Chem.
272
9123-9130
1997
Proteus vulgaris
Manually annotated by BRENDA team
Hermel, M.; Schrage, N.F.
Efficacy of plasmin enzymes and chondroitinase ABC in creating posterior vitreous separation in the pig: a masked, placebo-controlled in vivo study
Graefes Arch. Clin. Exp. Ophthalmol.
245
399-406
2007
Proteus vulgaris
Manually annotated by BRENDA team
Tester, N.J.; Plaas, A.H.; Howland, D.R.
Effect of body temperature on chondroitinase ABCs ability to cleave chondroitin sulfate glycosaminoglycans
J. Neurosci. Res.
85
1110-1118
2007
Proteus vulgaris
Manually annotated by BRENDA team
Zhang, Z.; Park, Y.; Kemp, M.M.; Zhao, W.; Im, A.R.; Shaya, D.; Cygler, M.; Kim, Y.S.; Linhardt, R.J.
Liquid chromatography-mass spectrometry to study chondroitin lyase action pattern
Anal. Biochem.
385
57-64
2009
Pedobacter heparinus, Proteus vulgaris
Manually annotated by BRENDA team
Xia, Y.; Zhao, T.; Li, J.; Li, L.; Hu, R.; Hu, S.; Feng, H.; Lin, J.
Antisense vimentin cDNA combined with chondroitinase ABC reduces glial scar and cystic cavity formation following spinal cord injury in rats
Biochem. Biophys. Res. Commun.
377
562-566
2008
Proteus vulgaris
Manually annotated by BRENDA team
Massey, J.M.; Amps, J.; Viapiano, M.S.; Matthews, R.T.; Wagoner, M.R.; Whitaker, C.M.; Alilain, W.; Yonkof, A.L.; Khalyfa, A.; Cooper, N.G.; Silver, J.; Onifer, S.M.
Increased chondroitin sulfate proteoglycan expression in denervated brainstem targets following spinal cord injury creates a barrier to axonal regeneration overcome by chondroitinase ABC and neurotrophin-3
Exp. Neurol.
209
426-445
2008
Proteus vulgaris
Manually annotated by BRENDA team
Tester, N.J.; Howland, D.R.
Chondroitinase ABC improves basic and skilled locomotion in spinal cord injured cats
Exp. Neurol.
209
483-496
2008
Proteus vulgaris
Manually annotated by BRENDA team
Garcia-Alias, G.; Lin, R.; Akrimi, S.F.; Story, D.; Bradbury, E.J.; Fawcett, J.W.
Therapeutic time window for the application of chondroitinase ABC after spinal cord injury
Exp. Neurol.
210
331-338
2008
Proteus vulgaris
Manually annotated by BRENDA team
Nielsen, T.C.; Meikle, P.J.; Hopwood, J.J.; Fuller, M.
Minimum substrate requirements of endoglycosidase activities toward dermatan sulfate by electrospray ionization-tandem mass spectrometry
Glycobiology
18
1119-1128
2008
Proteus vulgaris
Manually annotated by BRENDA team
Laparra, J.M.; Tako, E.; Glahn, R.P.; Miller, D.D.
Isolated glycosaminoglycans from cooked haddock enhance nonheme iron uptake by Caco-2 Cells
J. Agric. Food Chem.
56
10346-10351
2008
Proteus vulgaris
Manually annotated by BRENDA team
Mazzoni, A.; Pashley, D.H.; Ruggeri, A.J.; Vita, F.; Falconi, M.; Di Lenarda, R.; Breschi, L.
Adhesion to chondroitinase ABC treated dentin
J. Biomed. Mater. Res. B Appl. Biomater.
86B
228-236
2008
Proteus vulgaris
Manually annotated by BRENDA team
Hattori, T.; Matsuyama, Y.; Sakai, Y.; Ishiguro, N.; Hirata, H.; Nakamura, R.
Chondrotinase ABC enhances axonal regeneration across nerve gaps
J. Clin. Neurosci.
15
185-191
2008
Proteus vulgaris
Manually annotated by BRENDA team
Lin, R.; Kwok, J.C.; Crespo, D.; Fawcett, J.W.
Chondroitinase ABC has a long-lasting effect on chondroitin sulphate glycosaminoglycan content in the injured rat brain
J. Neurochem.
104
400-408
2008
Proteus vulgaris
Manually annotated by BRENDA team
Cafferty, W.B.; Bradbury, E.J.; Lidierth, M.; Jones, M.; Duffy, P.J.; Pezet, S.; McMahon, S.B.
Chondroitinase ABC-mediated plasticity of spinal sensory function
J. Neurosci.
28
11998-12009
2008
Proteus vulgaris
Manually annotated by BRENDA team
Hrabetova, S.; Masri, D.; Tao, L.; Xiao, F.; Nicholson, C.
Calcium diffusion enhanced after cleavage of negatively charged components of brain extracellular matrix by chondroitinase ABC
J. Physiol.
587
4029-4049
2009
Proteus vulgaris
Manually annotated by BRENDA team
Lee, H.; McKeon, R.J.; Bellamkonda, R.V.
Sustained delivery of thermostabilized chABC enhances axonal sprouting and functional recovery after spinal cord injury
Proc. Natl. Acad. Sci. USA
107
3340-3345
2010
Proteus vulgaris
Manually annotated by BRENDA team
Muir, E.; Fyfe, I.; Gardiner, S.; Li, L.; Warren, P.; Fawcett, J.; Keynes, R.; Rogers, J.
Modification of N-glycosylation sites allows secretion of bacterial chondroitinase ABC from mammalian cells
J. Biotechnol.
145
103-110
2010
Proteus vulgaris
Manually annotated by BRENDA team
Jefferson, S.C.; Tester, N.J.; Howland, D.R.
Chondroitinase ABC promotes recovery of adaptive limb movements and enhances axonal growth caudal to a spinal hemisection
J. Neurosci.
31
5710-5720
2011
Proteus vulgaris
Manually annotated by BRENDA team
Klueppel, M.
Efficient secretion of biologically active chondroitinase ABC from mammalian cells in the absence of an N-terminal signal peptide
Mol. Cell. Biochem.
351
1-11
2011
Proteus vulgaris (P59807), Proteus vulgaris
Manually annotated by BRENDA team
Nazari-Robati, M.; Khajeh, K.; Aminian, M.; Mollania, N.; Golestani, A.
Enhancement of thermal stability of chondroitinase ABC I by site-directed mutagenesis: an insight from Ramachandran plot
Biochim. Biophys. Acta
1834
479-486
2013
Proteus vulgaris (P59807)
Manually annotated by BRENDA team
Chen, X.R.; Liao, S.J.; Ye, L.X.; Gong, Q.; Ding, Q.; Zeng, J.S.; Yu, J.
Neuroprotective effect of chondroitinase ABC on primary and secondary brain injury after stroke in hypertensive rats
Brain Res.
1543
324-333
2014
Proteus vulgaris
Manually annotated by BRENDA team
Nazari-Robati, M.; Khajeh, K.; Aminian, M.; Fathi-Roudsari, M.; Golestani, A.
Co-solvent mediated thermal stabilization of chondroitinase ABC I form Proteus vulgaris
Int. J. Biol. Macromol.
50
487-492
2012
Proteus vulgaris (P59807), Proteus vulgaris
Manually annotated by BRENDA team
Chen, Z.; Li, Y.; Yuan, Q.
Expression, purification and thermostability of MBP-chondroitinase ABC I from Proteus vulgaris
Int. J. Biol. Macromol.
72
6-10
2014
Proteus vulgaris (P59807), Proteus vulgaris
Manually annotated by BRENDA team