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Information on EC 4.1.1.32 - phosphoenolpyruvate carboxykinase (GTP) and Organism(s) Rattus norvegicus and UniProt Accession P07379

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EC Tree
     4 Lyases
         4.1 Carbon-carbon lyases
             4.1.1 Carboxy-lyases
                4.1.1.32 phosphoenolpyruvate carboxykinase (GTP)
IUBMB Comments
ITP can act as phosphate donor.
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This record set is specific for:
Rattus norvegicus
UNIPROT: P07379
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Word Map
The taxonomic range for the selected organisms is: Rattus norvegicus
The enzyme appears in selected viruses and cellular organisms
Synonyms
pdc-e2, pepck-c, pep carboxykinase, p-enolpyruvate carboxykinase, phosphoenolpyruvate carboxykinase (gtp), pepck-m, pep-carboxykinase, phosphopyruvate carboxylase, phosphopyruvate carboxykinase, gtp:oxaloacetate carboxy-lyase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
carboxykinase, phosphopyruvate (guanosine triphosphate)
-
-
-
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GTP/ITP: oxaloacetate carboxylase (transphosphorylating)
-
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oxaloacetate kinase (decarboxylating, GDP)
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-
-
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P-enolpyruvate carboxykinase
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-
-
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PEP carboxykinase
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-
-
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PEP carboxylase
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-
-
-
PEPCK
PEPCK-C
-
cytosolic form
phosphoenolpyruvate carboxykinase
Phosphoenolpyruvate carboxylase
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-
-
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phosphoenolpyruvate carboxylase (GTP)
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-
-
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phosphoenolpyruvic carboxykinase
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-
-
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phosphoenolpyruvic carboxykinase (GTP)
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-
-
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phosphoenolpyruvic carboxykinase (inosine triphosphate)
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-
-
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Phosphoenolpyruvic carboxylase
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-
-
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phosphoenolpyruvic carboxylase (GTP)
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-
-
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phosphoenolpyruvic carboxylase (inosine triphosphate)
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-
-
-
phosphopyruvate carboxykinase
-
-
-
-
phosphopyruvate carboxylase
-
-
-
-
phosphopyruvate carboxylase (GTP)
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2
show the reaction diagram
the enzyme decarboxylates oxaloacetate to form the enolate of pyruvate which is then phosphorylated by MgGTP2- on the enzyme
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
carboxylation
-
-
-
-
decarboxylation
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
GTP:oxaloacetate carboxy-lyase (adding GTP; phosphoenolpyruvate-forming)
ITP can act as phosphate donor.
CAS REGISTRY NUMBER
COMMENTARY hide
9013-08-5
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
GDP + phosphoenolpyruvate + CO2
GTP + oxaloacetate
show the reaction diagram
-
-
-
r
GTP + oxaloacetate
GDP + phosphoenolpyruvate + CO2
show the reaction diagram
dGTP + oxaloacetate
dGDP + phosphoenolpyruvate + CO2
show the reaction diagram
-
-
-
-
?
GDP + phosphoenolpyruvate + CO2
GTP + oxaloacetate
show the reaction diagram
-
-
-
?
GTP + oxaloacetate
?
show the reaction diagram
GTP + oxaloacetate
GDP + phosphoenolpyruvate + CO2
show the reaction diagram
IDP + phosphoenolpyruvate + CO2
ITP + oxaloacetate
show the reaction diagram
-
-
-
?
ITP + oxaloacetate
IDP + phosphoenolpyruvate + CO2
show the reaction diagram
oxaloacetate + ?
pyruvate + CO2
show the reaction diagram
-
ir
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
GTP + oxaloacetate
?
show the reaction diagram
GTP + oxaloacetate
GDP + phosphoenolpyruvate + CO2
show the reaction diagram
ITP + oxaloacetate
IDP + phosphoenolpyruvate + CO2
show the reaction diagram
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rate limiting enzyme of gluconeogenesis
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-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Mg2+
-
binds to enzyme more weakly than Mn2+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2-Phosphoglycolate
-
beta-sulfopyruvate
mixed inhibitor of PEPCK against oxaloacetate
2-oxoglutarate
8-azidoguanosine 5'-triphosphate
-
photoinactivation is caused by formation of an intramolecular cystine disulfide bridge
dithiothreitol
-
5 mM, 19% inhibition
EDTA
-
0.5 mM, 86% inhibition
FeCl2
-
1.5 mM FeCl2 causes rapid inactivation. 0.05 mM FeCl2 and 0.0044 mg/ml ferroactivator, enhance to 3.1times the unstimulated rate
interleukin-10
-
added to cell culture medium in combination with interleukin-1beta, reduces mRNA and enzyme level
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interleukin-1beta
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added to cell culture medium in combination with interleukin-10, reduces mRNA and enzyme level
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Mg2+
-
Mg2+ reduces mitochondrial PEPCK activity
MgCl2
-
1.5 mM, 62% inhibition
oxalate
-
-
quinolinic acid
-
strongly inhibits the enzyme activated by ferroactivator and Fe2+, no inhibition of Mn2+-activated enzyme
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Ferroactivator
-
ferroactivator + Fe2+, stimulates both directions of the reaction
-
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.814 - 1.194
CO2
0.039 - 0.07
GDP
0.047 - 0.068
GTP
0.052 - 0.749
oxaloacetate
0.063 - 0.294
phosphoenolpyruvate
0.0075
GDP
-
-
0.0211
GTP
-
-
0.0715
IDP
-
-
0.279
ITP
-
-
0.026
oxaloacetate
-
-
0.048
phosphoenolpyruvate
-
-
additional information
additional information
-
kinetic data
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1 - 19
CO2
1 - 19
GDP
14 - 54
GTP
14 - 54
oxaloacetate
1 - 19
phosphoenolpyruvate
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.2 - 16
CO2
14 - 510
GDP
270 - 790
GTP
19 - 1000
oxaloacetate
15 - 66
phosphoenolpyruvate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
16.7
-
carboxylation of phosphoenolpyruvate
19.9
-
decarboxylation of oxaloacetate
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.5
-
assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
-
assay at
37
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
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enzyme loss impairs gluconeogenesis from lactate, lowers plasma glucose, insulin, and triglycerides, reduces hepatic glycogen, and increases glycerol turnover
metabolism
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approximately a third of gluconeogenesis comes from the enzyme
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
PCKGC_RAT
622
0
69416
Swiss-Prot
other Location (Reliability: 2)
PDB
SCOP
CATH
UNIPROT
ORGANISM
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
71500
-
1 * 71500, SDS-PAGE
74000
-
gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapour diffusion method, at 25 ?C in 0.1 M HEPES (pH 7.4) and 12-30% PEG 3350, creating PEPCK-Mn2+, PEPCK-Mn2+-oxaloacetate, PEPCK-Mn2+-oxaloacetate-Mn2+GDP, and PEPCKMn2+-Mn2+GTP crystals
mutant enzyme A467G in complex with Mn2+, substrates and inhibitors
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A467G
PEPCK has a 14fold higher Km value for oxaloacetate than wild type, coupled with a reduction in kcat (26% of wild type), resulting in a reduction in catalytic efficiency by nearly two orders of magnitude (1.9% of wild type). There is little change in the Km for GTP (factor of 1.4), resulting in the catalytic efficiency for GTP decreasing by less than a factor of three. In the reverse reaction, the mutant shows a decrease in the Km value for phosphoenolpyruvate (21% of wild type), a kcat reduced to 5% of the wild type value, and a factor of four reduction in the catalytic efficiency relative to wild type
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
22
-
protein concentration 0.057 mg/ml, glutathione concentration 0.2 mM, stable for at least 3 h
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
photoinactivation by 8-azidoguanosine 5'-triphosphate
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
4°C, in absence of metal ions, under N2, protein concentration 0.5 mg/ml or higher, stable for at least 14 days
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
glutathione-Uniflow resin column chromatography and P6DG column chromatography
recombinant enzyme
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CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli BL21 cells
expressed in Escherichia coli BL21(DE3) cells
expression in Escherichia coli BL-21
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EXPRESSION
ORGANISM
UNIPROT
LITERATURE
activation of SIRT1 by resveratrol represses transcription of the gene for the cytosolic form of phosphoenolpyruvate carboxykinase (GTP) by deacetylating hepatic nuclear factor 4alpha. Isonicotinamide decreases the level of mRNA for PEPCK-C
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phenobarbital directly suppresses PEPCK gene expression in spherical hepatocytes on EHS-gel, but not in those on type I collagen. Phenobarbital strongly suppresses cAMP-dependent induction of PEPCK gene expression
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there is a significant increase of 85% in kidney PEPCK activity of diabetic rats 0.85 units/g tissue/min in comparison to the 0.46 units/g tissue/min of normal controls, treatment of diabetic animals with cinnamaldehyde and glibenclamide for 60 days prevents the increase in PEPCK levels
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
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chronic administration of phenobarbital reduces hepatic PEPCK mRNA in streptozotocin-induced diabetic and nondiabetic rats, and phenobarbital reduces blood glucose level in diabetic rats
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Colombo, G.; Carlson, G.M.; Lardy, H.A.
Phosphoenolpyruvate carboxykinase (guanosine triphosphate) from rat liver cytosol. Separation of homogenous forms of the enzyme with high and low activity by chromatography on agarose-hexane-guanosine triphosphate
Biochemistry
17
5321-5329
1978
Rattus norvegicus
Manually annotated by BRENDA team
Bentle, L.A.; Lardy, H.A.
Phosphoenolpyruvate carboxykinase ferroactivator. Purification and some properties
J. Biol. Chem.
252
1431-1440
1977
Rattus norvegicus
Manually annotated by BRENDA team
Lewis, C.T.; Haley, B.E.; Carlson, G.M.
Formation of an intramolecular cystine disulfide during the reaction of 8-azidoguanosine 5'-triphosphate with cytosolic phosphoenolpyruvate carboxykinase (GTP) causes inactivation without photolabeling
Biochemistry
28
9248-9255
1989
Rattus norvegicus
Manually annotated by BRENDA team
Knowles, S.E.; Gunn, J.M.; Reshef, L.; Hanson, R.W.; Ballard, F.J.
Properties of phosphoenolpyruvate carboxykinase (guanosine triphosphate) sythesized in hepatoma cells in the presence of amino acid analogues
Biochem. J.
146
585-593
1975
Rattus norvegicus
Manually annotated by BRENDA team
Bosch, F.; Hatzoglou, M.; Park, E.A.; Hanson, R.W.
Vanadate inhibits expression of the gene for phosphoenolpyruvate carboxykinase (GTP) in rat hepatoma cells
J. Biol. Chem.
265
13677-13682
1990
Rattus norvegicus
Manually annotated by BRENDA team
Titheradge, M.A.; Picking, R.A.; Haynes, R.C.
Physiological concentration of 2-oxoglutarate regulate the activity of phosphoenolpyruvate carboxykinase in liver
Biochem. J.
285
767-771
1992
Rattus norvegicus
Manually annotated by BRENDA team
Ash, D.E.; Emig, F.A.; Chowdhury, S.A.; Satoh, Y.; Schramm, V.L.
Mammalian and avian liver phosphoenolpyruvate carboxykinase. Alternate substrates and inhibition by analogues of oxaloacetate
J. Biol. Chem.
265
7377-7384
1990
Gallus gallus, Rattus norvegicus
Manually annotated by BRENDA team
Zeitouni, N.; Eubank, D.W.; Lee, A.Q.; Oxford, M.G.; Freeman, T.L.; Mailliard, M.E.; Beale, E.G.
Phosphoenolpyruvate carboxykinase is induced in growth-arrested hepatoma cells
Biochem. Biophys. Res. Commun.
290
1513-1520
2002
Rattus norvegicus
Manually annotated by BRENDA team
Holyoak, T.; Nowak, T.
Structural investigation of the binding of nucleotide to phosphoenolpyruvate carboxykinase by NMR
Biochemistry
40
11037-11047
2001
Gallus gallus, Rattus norvegicus
Manually annotated by BRENDA team
Yerkovich, S.T.; Rigby, P.J.; Fournier, P.A.; Olynyk, J.K.; Yeoh, G.C.T.
Kupffer cell cytokines interleukin-1beta and interleukin-10 combine to inhibit phosphoenolpyruvate carboxykinase and gluconeogenesis in cultured hepatocytes
Int. J. Biochem. Cell Biol.
36
1462-1472
2004
Rattus norvegicus
Manually annotated by BRENDA team
Jin, J.Y.; DuBois, D.C.; Almon, R.R.; Jusko, W.J.
Receptor/gene-mediated pharmacodynamic effects of methylprednisolone on phosphoenolpyruvate carboxykinase regulation in rat liver
J. Pharmacol. Exp. Ther.
309
328-339
2004
Rattus norvegicus
Manually annotated by BRENDA team
Sullivan, S.M.; Holyoak, T.
Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid
Biochemistry
46
10078-10088
2007
Rattus norvegicus (P07379)
Manually annotated by BRENDA team
Cadoudal, T.; Glorian, M.; Massias, A.; Fouque, F.; Forest, C.; Benelli, C.
Retinoids upregulate phosphoenolpyruvate carboxykinase and glyceroneogenesis in human and rodent adipocytes
J. Nutr.
138
1004-1009
2008
Rattus norvegicus, Homo sapiens (P35558), Homo sapiens
Manually annotated by BRENDA team
Ribeiro, L.C.; Chitto, A.L.; Mueller, A.P.; Rocha, J.K.; Castro da Silva, M.; Quincozes-Santos, A.; Nardin, P.; Rotta, L.N.; Ziegler, D.R.; Goncalves, C.A.; Da Silva, R.S.; Perry, M.L.; Gottfried, C.
Ketogenic diet-fed rats have increased fat mass and phosphoenolpyruvate carboxykinase activity
Mol. Nutr. Food Res.
52
1365-1371
2008
Rattus norvegicus
Manually annotated by BRENDA team
Anand, P.; Murali, K.Y.; Tandon, V.; Murthy, P.S.; Chandra, R.
Insulinotropic effect of cinnamaldehyde on transcriptional regulation of pyruvate kinase, phosphoenolpyruvate carboxykinase, and GLUT4 translocation in experimental diabetic rats
Chem. Biol. Interact.
186
72-81
2010
Rattus norvegicus
Manually annotated by BRENDA team
Stark, R.; Pasquel, F.; Turcu, A.; Pongratz, R.L.; Roden, M.; Cline, G.W.; Shulman, G.I.; Kibbey, R.G.
Phosphoenolpyruvate cycling via mitochondrial phosphoenolpyruvate carboxykinase links anaplerosis and mitochondrial GTP with insulin secretion
J. Biol. Chem.
284
26578-26590
2009
Rattus norvegicus
Manually annotated by BRENDA team
Yang, J.; Kong, X.; Martins-Santos, M.E.; Aleman, G.; Chaco, E.; Liu, G.E.; Wu, S.Y.; Samols, D.; Hakimi, P.; Chiang, C.M.; Hanson, R.W.
Activation of SIRT1 by resveratrol represses transcription of the gene for the cytosolic form of phosphoenolpyruvate carboxykinase (GTP) by deacetylating hepatic nuclear factor 4alpha
J. Biol. Chem.
284
27042-27053
2009
Homo sapiens, Mus musculus, Rattus norvegicus
Manually annotated by BRENDA team
Johnson, T.A.; Holyoak, T.
Increasing the conformational entropy of the Omega-loop lid domain in phosphoenolpyruvate carboxykinase impairs catalysis and decreases catalytic fidelity
Biochemistry
49
5176-5187
2010
Rattus norvegicus (P07379)
Manually annotated by BRENDA team
Stark, R.; Guebre-Egziabher, F.; Zhao, X.; Feriod, C.; Dong, J.; Alves, T.C.; Ioja, S.; Pongratz, R.L.; Bhanot, S.; Roden, M.; Cline, G.W.; Shulman, G.I.; Kibbey, R.G.
A role for mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M) in the regulation of hepatic gluconeogenesis
J. Biol. Chem.
289
7257-7263
2014
Rattus norvegicus
Manually annotated by BRENDA team
Oda, H.; Okuda, Y.; Yoshida, Y.; Kimura, N.; Kakinuma, A.
Phenobarbital reduces blood glucose and gluconeogenesis through down-regulation of phosphoenolpyruvate carboxykinase (GTP) gene expression in rats
Biochem. Biophys. Res. Commun.
466
306-311
2015
Rattus norvegicus
Manually annotated by BRENDA team