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UDP-2, 3-diacylglucosamine hydrolase
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UDP-2,3-bis[(3R)-3-hydroxymyristoyl]-alpha-D-glucosamine 2,3-bis[(3R)-3-hydroxymyristoyl]-beta-D-glucosaminyl 1-phosphate phosphohydrolase
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incorrect
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UDP-2,3-diacylglucosamine hydrolase
UDP-2,3-diacylglucosamine pyrophosphatase
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine 2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate phosphohydrolase
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UDP-diacylglucosamine pyrophosphatase
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UDP-diacylglucosamine pyrophosphohydrase
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UDP-diacylglucosamine pyrophosphohydrolase
LpxH
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LpxI
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UDP-2,3-diacylglucosamine hydrolase
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UDP-2,3-diacylglucosamine hydrolase
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UDP-2,3-diacylglucosamine hydrolase
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UDP-2,3-diacylglucosamine hydrolase
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UDP-2,3-diacylglucosamine pyrophosphatase
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UDP-2,3-diacylglucosamine pyrophosphatase
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UDP-2,3-diacylglucosamine pyrophosphatase
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UDP-2,3-diacylglucosamine pyrophosphatase
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UDP-2,3-diacylglucosamine pyrophosphatase
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UDP-diacylglucosamine pyrophosphohydrolase
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UDP-diacylglucosamine pyrophosphohydrolase
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YbbF
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UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
UDP-2,3-diacylglucosamine + H2O
2,3-diacylglucosamine 1-phosphate + UMP
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
UDP-N2,O3-bis((3R)-3-hydroxymyristoyl)-alpha-D-glucosamine + H2O
N2,O3-bis((3R)-3-hydroxymyristoyl)-alpha-D-glucosamine 1-phosphate + UMP
strict requirement for a diacylated substrate. LpxH hydrolysis incorporates H218O into UMP by catalyzing the attack of water on the alpha-phosphorus atom of UDP-2,3-diacylglucosamine
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?
additional information
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UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
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a step of lipid A biosynthesis. LpxH is essential in Escherichia coli
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?
UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
step of lipid A biosynthesis
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?
UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
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step of lipid A biosynthesis. Pseudomonas aeruginosa LpxH catalyzes UDP-2,3-diacylglucosamine hydrolysis in vitro and can substitute for Escherichia coli lpxH in vivo
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?
UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
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Pseudomonas aeruginosa LpxH catalyzes UDP-2,3-diacylglucosamine hydrolysis in vitro and can substitute for Escherichia coli lpxH in vivo
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?
UDP-2,3-diacylglucosamine + H2O
2,3-diacylglucosamine 1-phosphate + UMP
the enzyme is selective for UDP-2,3-diacylglucosamine
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UDP-2,3-diacylglucosamine + H2O
2,3-diacylglucosamine 1-phosphate + UMP
the enzyme is selective for UDP-2,3-diacylglucosamine
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?
UDP-2,3-diacylglucosamine + H2O
2,3-diacylglucosamine 1-phosphate + UMP
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UDP-2,3-diacylglucosamine + H2O
2,3-diacylglucosamine 1-phosphate + UMP
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UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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additional information
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cytoplasmic cyclophilin PPIB physically interacts with UDP-2, 3-diacylglucosamine hydrolase LpxH
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additional information
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no activity with UDP-N-acetylglucosamine and UDP-3-O-(R)-(3-hydroxymyristoyl)glucosamine, LpxH does not cleave CDP-diacylglycerol
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additional information
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no activity with UDP-N-acetylglucosamine and UDP-3-O-(R)-(3-hydroxymyristoyl)glucosamine, LpxH does not cleave CDP-diacylglycerol
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UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
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a step of lipid A biosynthesis. LpxH is essential in Escherichia coli
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?
UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
step of lipid A biosynthesis
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?
UDP-2,3-bis((3R)-3-hydroxymyristoyl)alpha-D-glucosamine + H2O
2,3-bis((3R)-3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP
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step of lipid A biosynthesis. Pseudomonas aeruginosa LpxH catalyzes UDP-2,3-diacylglucosamine hydrolysis in vitro and can substitute for Escherichia coli lpxH in vivo
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine + H2O
2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + UMP
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?
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1-(5-((4-(3-(trifluoromethyl) phenyl)piperazin-1-yl) sulfonyl)indolin-1-yl)ethan-1-one
47.2% residual activity at 0.002 mM, 23.5% residual activity at 0.006 mM, 14.1% residual activity at 0.01 mM, 11.7% residual activity at 0.05 mM
1-(5-[4-[3-(propan-2-yl)phenyl]piperazine-1-carbonyl]-2,3-dihydro-1H-indol-1-yl)ethan-1-one
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29% residual activity at 0.01 mM
1-(5-[4-[3-(trifluoromethyl)phenyl]-1,4-diazepane-1-sulfonyl]-2,3-dihydro-1H-indol-1-yl)ethan-1-one
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94% residual activity at 0.01 mM
1-(5-[4-[3-(trifluoromethyl)phenyl]piperazine-1-sulfonyl]-2,3-dihydro-1H-indol-1-yl)ethan-1-one
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6.0% residual activity at 0.01 mM
1-[5-(4-phenylpiperazine-1-sulfonyl)-2,3-dihydro-1H-indol-1-yl]ethan-1-one
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32% residual activity at 0.01 mM
1-[5-(4-[[3-(trifluoromethyl)phenyl]methyl]piperazine-1-carbonyl)-2,3-dihydro-1H-indol-1-yl]ethan-1-one
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87% residual activity at 0.01 mM
1-[5-[4-(3-bromophenyl)piperazine-1-sulfonyl]-2,3-dihydro-1H-indol-1-yl]ethan-1-one
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24% residual activity at 0.01 mM
1-[5-[4-(3-ethylphenyl)piperazine-1-carbonyl]-2,3-dihydro-1H-indol-1-yl]ethan-1-one
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21% residual activity at 0.01 mM
1-[5-[4-(3-hydroxyphenyl)piperazine-1-sulfonyl]-2,3-dihydro-1H-indol-1-yl]ethan-1-one
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91% residual activity at 0.01 mM
1-[5-[4-([1,1'-biphenyl]-3-yl)piperazine-1-carbonyl]-2,3-dihydro-1H-indol-1-yl]ethan-1-one
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24% residual activity at 0.01 mM
2-oxo-2-((4-((4-(3-(trifluoromethyl)phenyl)piperazin-1-yl)sulfonyl)phenyl)amino)acetic acid
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55% residual activity at 0.01 mM
3-[4-[3-(trifluoromethyl)phenyl]piperazine-1-sulfonyl]benzoic acid
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98% residual activity at 0.01 mM
4-[5-[4-(3-bromophenyl)piperazine-1-sulfonyl]-2,3-dihydro-1H-indol-1-yl]-4-oxobutanoic acid
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24% residual activity at 0.01 mM
EDTA
complete inhibition at 2 or 0.2 mM
methyl 4-[5-[4-(3-bromophenyl)piperazine-1-sulfonyl]-2,3-dihydro-1H-indol-1-yl]-4-oxobutanoate
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42% residual activity at 0.01 mM
N-(4-((4-(3-(trifluoromethyl)phenyl)piperazin-1-yl)sulfonyl)phenyl)acetamide
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36% residual activity at 0.01 mM
N-(4-[4-[3-(trifluoromethyl)phenyl]piperazine-1-sulfonyl]phenyl)acetamide
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30% residual activity at 0.01 mM
N1-hydroxy-N2-(4-((4-(3-(trifluoromethyl)phenyl)piperazin-1-yl)sulfonyl)phenyl)oxalamide
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41% residual activity at 0.01 mM
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malfunction
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construction of Escherichia coli mutant KB21/pKJB5 that contains a kanamycin cassette inserted into the chromosomal copy of lpxH. The plasmid pKJB5 harbors lpxH+ and features a temperature-sensitive origin of replication. KB21/pKJB5 grows on nutrient medium at 30 °C but not at 44 °C when the plasmid carrying lpxH+ is lost. It is conclude that lpxH is essential in Escherichia coli
malfunction
UDP-2,3-diacylglucosamine-deficiency results in lethality
malfunction
blockage of LpxH causes accumulation of detergent-like pathway intermediates that prevents cell growth
malfunction
enzyme depletion causes clear morphological defects in Acinetobacter baumannii strain ATCC 19606
malfunction
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UDP-2,3-diacylglucosamine-deficiency results in lethality
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malfunction
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enzyme depletion causes clear morphological defects in Acinetobacter baumannii strain ATCC 19606
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malfunction
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blockage of LpxH causes accumulation of detergent-like pathway intermediates that prevents cell growth
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metabolism
the enzyme is involved in lipid A biosynthesis. The enzyme is essential for growth in the strain Acinetobacter baumannii ATCC 19606
metabolism
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the enzyme is involved in lipid A biosynthesis. The enzyme is essential for growth in the strain Acinetobacter baumannii ATCC 19606
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physiological function
the enzyme is essential for growth in Acinetobacter baumannii strain ATCC 19606
physiological function
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the enzyme is essential for growth in Acinetobacter baumannii strain ATCC 19606
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F141H/L142S/L146S/F147H/E14A/E15A/K161T/E162A
solubilized enzyme version with 488% activity compared to the wild type enzyme, including four solubilizing mutations (F141H, L142S, L146S, and F147H) and four surface entropy reduction mutations (E14A, E15A, K161T, and E162A) to improve protein expression and crystallization
I47C/R149C
the mutant shows 141% activity compared to the wild type enzyme
I47G/R149G
the mutant shows 11.3% activity compared to the wild type enzyme
W136H
the mutant shows 600% activity compared to the wild type enzyme
D117A
2fold decrease in activity compared to wild-type
D42A
80000fold decrease in activity compared to wild-type
D9A
200000fold decrease in activity compared to wild-type
H115A
12000fold decrease in activity compared to wild-type
H11A
20000fold decrease in activity compared to wild-type
H196A
5000fold decrease in activity compared to wild-type
R81A
7000fold decrease in activity compared to wild-type
D117A
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2fold decrease in activity compared to wild-type
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D42A
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80000fold decrease in activity compared to wild-type
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H115A
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12000fold decrease in activity compared to wild-type
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H11A
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20000fold decrease in activity compared to wild-type
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H196A
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5000fold decrease in activity compared to wild-type
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H10N
the inactive mutant shows loss of manganese 1-binding ability
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Babinski, K.J.; Ribeiro, A.A.; Raetz, C.R.
The Escherichia coli gene encoding the UDP-2,3-diacylglucosamine pyrophosphatase of lipid A biosynthesis
J. Biol. Chem.
277
25937-2546
2002
Escherichia coli (P43341), Escherichia coli
brenda
Babinski, K.J.; Kanjilal, S.J.; Raetz, C.R.
Accumulation of the lipid A precursor UDP-2,3-diacylglucosamine in an Escherichia coli mutant lacking the lpxH gene
J. Biol. Chem.
277
25947-25956
2002
Escherichia coli, Pseudomonas aeruginosa
brenda
Metzger, L.E.; Raetz, C.R.
An alternative route for UDP-diacylglucosamine hydrolysis in bacterial lipid A biosynthesis
Biochemistry
49
6715-6726
2010
Caulobacter vibrioides (A0A0H3C8Q1), Caulobacter vibrioides, Caulobacter vibrioides CB15 (A0A0H3C8Q1)
brenda
Dimou, M.; Venieraki, A.; Liakopoulos, G.; Kouri, E.D.; Tampakaki, A.; Katinakis, P.
Gene expression and biochemical characterization of Azotobacter vinelandii cyclophilins and protein interaction studies of the cytoplasmic isoform with dnaK and lpxH
J. Mol. Microbiol. Biotechnol.
20
176-190
2011
Azotobacter vinelandii (C1DHE3)
brenda
Young, H.E.; Donohue, M.P.; Smirnova, T.I.; Smirnov, A.I.; Zhou, P.
The UDP-diacylglucosamine pyrophosphohydrolase LpxH in lipid A biosynthesis utilizes Mn2+ cluster for catalysis
J. Biol. Chem.
288
26987-27001
2013
Haemophilus influenzae (P44046), Haemophilus influenzae, Haemophilus influenzae DSM 11121 (P44046)
brenda
Lee, M.; Zhao, J.; Kwak, S.H.; Cho, J.; Lee, M.; Gillespie, R.A.; Kwon, D.Y.; Lee, H.; Park, H.J.; Wu, Q.; Zhou, P.; Hong, J.
Structure-activity relationship of sulfonyl piperazine LpxH inhibitors analyzed by an LpxE-coupled malachite green assay
ACS Infect. Dis.
5
641-651
2019
Escherichia coli
brenda
Bohl, T.; Ieong, P.; Lee, J.; Lee, T.; Kankanala, J.; Shi, K.; Demir, A.; Kurahashi, K.; Amaro, R.; Wang, Z.; Aihara, H.
The substrate-binding cap of the UDP-diacylglucosamine pyrophosphatase LpxH is highly flexible, enabling facile substrate binding and product release
J. Biol. Chem.
293
7969-7981
2018
Escherichia coli (P43341)
brenda
Arenas, J.; Pupo, E.; De Jonge, E.; Perez-Ortega, J.; Schaarschmidt, J.; Van Der Ley, P.; Tommassen, J.
Substrate specificity of the pyrophosphohydrolase LpxH determines the asymmetry of Bordetella pertussis lipid A
J. Biol. Chem.
294
7982-7989
2019
Neisseria meningitidis
brenda
Cho, J.; Lee, C.; Zhao, J.; Young, H.; Zhou, P.
Structure of the essential Haemophilus influenzae UDP-diacylglucosamine pyrophosphohydrolase LpxH in lipid A biosynthesis
Nat. Microbiol.
1
16154
2016
Haemophilus influenzae
brenda
Richie, D.; Takeoka, K.; Bojkovic, J.; Metzger, L.; Rath, C.; Sawyer, W.; Wei, J.; Dean, C.
Toxic accumulation of lps pathway intermediates underlies the requirement of LpxH for growth of acinetobacter Baumannii ATCC 19606
PLoS ONE
11
e0160918
2016
Acinetobacter baumannii, Acinetobacter baumannii (D0C652), Acinetobacter baumannii ATCC 19606, Acinetobacter baumannii ATCC 19606 (D0C652)
brenda
Okada, C.; Wakabayashi, H.; Kobayashi, M.; Shinoda, A.; Tanaka, I.; Yao, M.
Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci. Rep.
6
32822
2016
Pseudomonas aeruginosa (Q9I2V0), Pseudomonas aeruginosa
brenda