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Information on EC 3.5.4.9 - methenyltetrahydrofolate cyclohydrolase and Organism(s) Homo sapiens and UniProt Accession P13995

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IUBMB Comments
In eukaryotes, the enzyme occurs as a trifunctional enzyme that also has methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) and formate---tetrahydrofolate ligase (EC 6.3.4.3) activity. In some prokaryotes, it occurs as a bifunctional enzyme that also has dehydrogenase (EC 1.5.1.5) activity or formimidoyltetrahydrofolate cyclodeaminase (EC 4.3.1.4) activity.
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This record set is specific for:
Homo sapiens
UNIPROT: P13995
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Word Map
The taxonomic range for the selected organisms is: Homo sapiens
The enzyme appears in selected viruses and cellular organisms
Synonyms
mthfd2, cyclohydrolase, methenyltetrahydrofolate cyclohydrolase, 5,10-methenyltetrahydrofolate cyclohydrolase, mthfd2l, 5,10-methenyl-thf cyclohydrolase, methylenetetrahydrofolate dehydrogenase/cyclohydrolase, nad-dependent methylenetetrahydrofolate dehydrogenase-cyclohydrolase, dhch1, methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
methylenetetrahydrofolate dehydrogenase/cyclohydrolase
-
methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
-
5,10-methenyl-H4folate cyclohydrolase
-
-
-
-
5,10-methenyltetrahydrofolate cyclohydrolase
-
-
Citrovorum factor cyclodehydrase
-
-
-
-
cyclohydrolase
formyl-methenyl-methylenetetrahydrofolate synthetase (combined)
-
-
-
-
methenyl-THF cyclohydrolase
-
-
-
-
methenyltetrahydrofolate cyclohydrolase
methenyltetrahydrofolate dehydrogenase/cyclohydrolase
-
-
methyleneH4folate cyclohydrolase
-
-
methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohydrolase-formyltetrahydrofolate synthetase
-
methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
-
methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase/formyltetrahydrofolate synthetase
MTHFD1
MTHFD2
-
-
NAD-dependent methylenetetrahydrofolate dehydrogenase-cyclohydrolase
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
5,10-methenyltetrahydrofolate + H2O = 10-formyltetrahydrofolate
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis
-
-
amidine hydrolysis
SYSTEMATIC NAME
IUBMB Comments
5,10-methenyltetrahydrofolate 5-hydrolase (decyclizing)
In eukaryotes, the enzyme occurs as a trifunctional enzyme that also has methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) and formate---tetrahydrofolate ligase (EC 6.3.4.3) activity. In some prokaryotes, it occurs as a bifunctional enzyme that also has dehydrogenase (EC 1.5.1.5) activity or formimidoyltetrahydrofolate cyclodeaminase (EC 4.3.1.4) activity.
CAS REGISTRY NUMBER
COMMENTARY hide
9027-97-8
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
(6R,S)-methenyltetrahydrofolate + H2O
?
show the reaction diagram
-
-
-
-
?
10-formyltetrahydrofolate
5,10-methenyltetrahydrofolate + H2O
show the reaction diagram
-
-
-
-
r
5,10-methenyltetrahydrofolate + H2O
10-formyltetrahydrofolate
show the reaction diagram
5,10-methenyltetrahydrofolate + H2O
10-formyltetrahydrofolate + ?
show the reaction diagram
cyclodehydrolase activity of MTHFD1
-
-
r
5,10-methylenetetrahydrofolate + NADP+
5,10-methenyltetrahydrofolate + NADPH + H+
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
10-formyltetrahydrofolate
5,10-methenyltetrahydrofolate + H2O
show the reaction diagram
-
-
-
-
r
5,10-methenyltetrahydrofolate + H2O
10-formyltetrahydrofolate
show the reaction diagram
5,10-methenyltetrahydrofolate + H2O
10-formyltetrahydrofolate + ?
show the reaction diagram
cyclodehydrolase activity of MTHFD1
-
-
r
additional information
?
-
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
(2S)-2-[[4-[(6aR)-3-amino-1,9-dioxo-5,6,6a,7-tetrahydro-4H-imidazo[1,5-f]pteridin-8-yl]benzoyl]amino]pentanedioic acid
i.e. LY345899
2',5'-ADP
-
millimolar concentrations
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2',5'-ADP
5'-ADP
-
analog of NADP+ does not stimulate the reverse cyclohydrolase activity
phosphate
-
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0164
(6R,S)-methenyltetrahydrofolate
-
-
0.016 - 0.043
10-formyltetrahydrofolate
0.05 - 2.36
5,10-methenyltetrahydrofolate
0.019 - 0.23
methenyltetrahydrofolate
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
107 - 185
methenyltetrahydrofolate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.14
-
-
1.6
mutant K56R
113
recombinant mutant R250A, cyclohydrolase forward reaction
1173
-
forward reaction, recombinant mutant R173A, substrate 5,10-methenyltetrahydrofolate
12.8
-
reverse reaction, recombinant mutant R173K, substrate 10-formyltetrahydrofolate, in presence of 2',5'-ADP
128
mutantS49A
13.5
-
forward reaction, recombinant mutant S197A, substrate 5,10-methenyltetrahydrofolate
133
DC301, wild-type
146
mutants C147A, T148A
15.9
-
reverse reaction, recombinant mutant S197T, substrate 10-formyltetrahydrofolate, in presence of 2',5'-ADP
160
mutant Y52F
161
recombinant wild-type enzyme, cyclohydrolase forward reaction
18
mutant C147Q
22.4
-
reverse reaction, recombinant wild-type enzyme, substrate 10-formyltetrahydrofolate, in presence of 2',5'-ADP
22.8
-
reverse reaction, recombinant mutant S197R, substrate 10-formyltetrahydrofolate, in presence of 2',5'-ADP
25
mutant S49Q
3.4
-
forward reaction, recombinant mutant S197R, substrate 5,10-methenyltetrahydrofolate
329
-
forward reaction, recombinant mutant R173K, substrate 5,10-methenyltetrahydrofolate
39
mutant Y52S
47
mutant Y52A
51
recombinant loop3G mutant, cyclohydrolase forward reaction
6.4
-
reverse reaction, recombinant mutant S197A, substrate 10-formyltetrahydrofolate, in absence of 2',5'-ADP
6.7
mutants C147Q, S49Q
61.6
-
forward reaction, recombinant mutant S197D, substrate 5,10-methenyltetrahydrofolate
66.7
recombinant loop5G mutant, cyclohydrolase forward reaction
7.2
-
forward reaction, recombinant wild-type enzyme, substrate 5,10-methenyltetrahydrofolate
7.3
-
reverse reaction, recombinant mutant S197R, substrate 10-formyltetrahydrofolate, in absence of 2',5'-ADP
7.6
-
reverse reaction, recombinant mutant S197A, substrate 10-formyltetrahydrofolate, in presence of 2',5'-ADP
76.5
recombinant mutant Y240A, cyclohydrolase forward reaction
8
-
reverse reaction, recombinant mutant R173A, substrate 10-formyltetrahydrofolate, in presence of 2',5'-ADP
9
-
reverse reaction, recombinant mutant R173K, substrate 10-formyltetrahydrofolate, in absence of 2',5'-ADP
9.3
-
reverse reaction, recombinant mutant S197D, substrate 10-formyltetrahydrofolate, in absence of 2',5'-ADP
9.6
-
reverse reaction, recombinant wild-type enzyme, substrate 10-formyltetrahydrofolate, in absence of 2',5'-ADP
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.3
-
assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
30
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
Uniprot
Manually annotated by BRENDA team
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
both Mthfd2 and Mthfd2l are expressed during embryogenesis but differ in timing of expression. Mthfd2l expression is low in early developmental stages but begins to increase at embryonic day 10.5 and remains elevated through birth while Mthfd2 is expressed more abundantly during early developmental stages and begins to taper off, with little or no expression observed in most adult tissues
Manually annotated by BRENDA team
both Mthfd2 and Mthfd2l are expressed during embryogenesis but differ in timing of expression. Mthfd2l expression is low in early developmental stages but begins to increase at embryonic day 10.5 and remains elevated through birth while Mthfd2 is expressed more abundantly during early developmental stages and begins to taper off, with little or no expression observed in most adult tissues
Manually annotated by BRENDA team
additional information
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
metabolism
metabolism
the enzyme is involved in folate pathway. It is involved in mitochondrial NADPH production
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
MTDC_HUMAN
350
0
37895
Swiss-Prot
Mitochondrion (Reliability: 2)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
34000
-
MTHFD2 evolves from a trifunctional dehydrogenase-cyclohydrolase-synthetase precursor with the loss of synthetase function
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
crystal structure of the enzyme (MTHFD2) in complex with a substrate-based inhibitor and the enzyme cofactors NAD+ and inorganic phosphate
crystal structure of DC301, the cytosolic DC domain of the trifunctional enzyme
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D125A
site-directed mutagenesis, inactive mutant
D125C
site-directed mutagenesis, inactive mutant
D125E
site-directed mutagenesis, 95% reduced activity in the forward reaction compared to the wild-type enzyme
D125M
site-directed mutagenesis, inactive mutant
D125N
site-directed mutagenesis, inactive mutant
D125Q
site-directed mutagenesis, inactive mutant
K56Q/Q100K
Q100K
site-directed mutagenesis, inactive mutant
Q100M
site-directed mutagenesis, inactive mutant
Q100N
site-directed mutagenesis, inactive mutant
R173A
-
site-directed mutagenesis, at least 500fold increased Km for NADP+ compared to the wild-type, 163fold increased activity in the forward and reduced activity in the reverse reaction of the cyclohydrolase, unaltered channeling efficiency
R173E
-
site-directed mutagenesis, no dehydrogenase forward reaction activity, no forward channeling
R173K
-
site-directed mutagenesis, at least 500fold increased Km for NADP+ compared to the wild-type, 46fold increased activity in the forward and reduced activity in the reverse reaction of the cyclohydrolase, unaltered channeling efficiency
R250A
site-directed mutagenesis, 29.7% reduced activity in forward and reduced activity in the reverse reaction compared to the wild-type enzyme
R653Q
S197A
-
site-directed mutagenesis, 20fold increased Km for NADP+ compared to the wild-type, reduced activity in the reverse reaction of the cyclohydrolase, no stimulation by 2',5'-ADP, unaltered channeling efficiency
S197D
-
site-directed mutagenesis, 8.5fold increased activity in the forward reaction of the cyclohydrolase, unaltered channeling efficiency
S197R
-
site-directed mutagenesis, 10fold increased Km for methenyltetrahydrofolate, reduced activity in the forward and reverse reaction of the cyclohydrolase, unaltered channeling efficiency
S197T
-
site-directed mutagenesis, slightly increased activity in the forward reaction of the cyclohydrolase, unaltered channeling efficiency
Y240A
site-directed mutagenesis, 52,5% reduced activity in forward and reduced activity in the reverse reaction compared to the wild-type enzyme
additional information
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-80°C, 50 mM potassium phosphate, 30% glycerol buffer, stable for over 1 month
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
by anion-exchange chromatography
recombinant His-tagged wild-type and mutant enzymes from Escherichia coli by Ni2+-chelate affinity chromatography
recombinant protein expressed in Escherichia coli
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
6His-tagged enzyme is expressed in Escherichia coli
expression in Escherichia coli BL21(DE3)
6His-tagged enzyme is expressed in Escherichia coli
bifunctional dehydrogenase/cyclohydrolase portion of the cytoplasmic trifunctional enzyme cloned and heterologous expressed in the yeast strain YA3-1
-
cDNA encoding bifunctional enzyme cloned and expressed in Escherichia coli K38
-
expression of wild-type and mutant enzymes in Escherichia coli BL21 as C-terminally His-tagged enzymes
expression of wild-type and mutant enzymes in Escherichia coli JM109 as C-terminally His-tagged enzymes
-
null mutation is embryonic lethal at about 12 days gestation, knockout of enzyme establishes the important role of formate production during embryogenesis
-
the wild type and R653Q mutant pBKeDCS constructs are transformed into Escherichia coli BL21 DE3 to express the full-length protein
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
upregulation and overexpression in cancer cells
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
the enzyme (MTHFD2) is highly relevant as an anticancer target
medicine
enzyme represents a potential pharmaceutical target for manipulation of cell growth and development and hence cancer prevention or treatment
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Tabor, H.; Wyngarden, L.
The enzymatic formation of formiminotetrahydrofolic acid, 5,10-methenyltetrahydrofolic acid, and 10-formyltetrahydrofolic acid in the metabolism of formiminoglutamic acid
J. Biol. Chem.
234
1830-1846
1959
Bos taurus, Cavia porcellus, Clostridium cylindrosporum, Felis sp., Gottschalkia acidurici, Homo sapiens, Mus musculus, Oryctolagus cuniculus, Ovis aries, Pseudomonas fluorescens, Rattus norvegicus, Sus scrofa
Manually annotated by BRENDA team
D'Ari, L.; Rabinowitz, J.C.
Purification, characterization, cloning, and amino acid sequence of the bifunctional enzyme 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase from Escherichia coli
J. Biol. Chem.
266
23953-23958
1991
Clostridium cylindrosporum, Columba sp., Escherichia coli, Escherichia coli BE, Gallus gallus, Homo sapiens, Moorella thermoacetica, Mus musculus, Oryctolagus cuniculus, Ovis aries, Rattus norvegicus, Saccharomyces cerevisiae, Sus scrofa
Manually annotated by BRENDA team
Xiao-Ming, Y.; MacKenzie, R.E.
Expression of human NAD-dependent methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohydrolase in Escherichia coli: Purification and partial characterization
Protein Expr. Purif.
3
256-262
1992
Homo sapiens
Manually annotated by BRENDA team
Pelletier, J.N.; MacKenzie, R.E.
Binding to the 2',5'-ADP subsite stimulates cyclohydrolase activity of human NADP+-dependent methylenetetrahydrofolate dehydrogenase/cyclohydrolase
Biochemistry
33
1900-1906
1994
Saccharomyces cerevisiae, Homo sapiens, Sus scrofa
Manually annotated by BRENDA team
Pawelek, P.D.; MacKenzie, R.E.
Methylenetetrahydrofolate dehydrogenase-cyclohydrolase from Photobacterium phosphoreum shares properties with a mammalian mitochondrial homologue
Biochim. Biophys. Acta
1296
47-54
1996
Acetobacterium woodii, Clostridium formicaceticum, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Photobacterium phosphoreum, Rattus norvegicus, Saccharomyces cerevisiae, Salmonella enterica subsp. enterica serovar Typhimurium, Spodoptera frugiperda, Spodoptera frugiperda Sf9
Manually annotated by BRENDA team
Cheung, E.; D'Ari, L.; Rabinowitz, J.C.; Dyer, D.H.; Huang, J.Y.; Stoddard, B.L.
Purification, crystallization, and preliminary X-ray studies of a bifunctional 5,10-methenyl/methylene tetrahydrofolate cyclohydrolase/dehydrogenase from Escherichia coli
Proteins
27
322-324
1997
Saccharomyces cerevisiae, Drosophila melanogaster, Escherichia coli, Homo sapiens, Rattus norvegicus, Escherichia coli BE
Manually annotated by BRENDA team
Schmidt, A.; Wu, H.; MacKenzie, R.E.; Chen, V.J.; Bewly, J.R.; Ray, J.E.; Toth, J.E; Cygler, M.
Structures of three inhibitor complexes provide insight into the reaction mechanism of the human methylenetetrahydrofolate dehydrogenase/cyclohydrolase
Biochemistry
39
6325-6335
2000
Drosophila melanogaster, Mus musculus, Rattus norvegicus, Homo sapiens (P11586), Homo sapiens
Manually annotated by BRENDA team
Pawelek, P.D.; MacKenzie, R.E.
Methenyltetrahydrofolate cyclohydrolase is rate limiting for the enzymatic conversion of 10-formyltetrahydrofolate to 5,10-methylenetetrahydrofolate in bifunctional dehydrogenase-cyclohydrolase enzymes
Biochemistry
37
1109-1115
1998
Homo sapiens, Mus musculus, Photobacterium phosphoreum, Saccharomyces cerevisiae, Sus scrofa
Manually annotated by BRENDA team
Pawelek, P.D.; Allaire, M.; Cygler, M.; MacKenzie, R.E.
Channeling efficiency in the bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase domain: the effects of site-directed mutagenesis of NADP binding residues
Biochim. Biophys. Acta
1479
59-68
2000
Homo sapiens
Manually annotated by BRENDA team
Sundararajan, S.; MacKenzie, R.E.
Residues involved in the mechanism of the bifunctional methylenetetrahydrofolate dehydrogenase-cyclohydrolase: The roles of glutamine 100 and aspartate 125
J. Biol. Chem.
277
18703-18709
2002
Homo sapiens (P11586), Homo sapiens
Manually annotated by BRENDA team
Konrad, C.; Mueller, G.A.; Langer, C.; Kuhlenbaeumer, G.; Berger, K.; Nabavi, D.G.; Dziewas, R.; Stoegbauer, F.; Ringelstein, E.B.; Junker, R.
Plasma homocysteine, MTHFR C677T, CBS 844ins68bp, and MTHFD1 G1958A polymorphisms in spontaneous cervical artery dissections
J. Neurol.
251
1242-1248
2004
Homo sapiens
Manually annotated by BRENDA team
Parle-McDermott, A.; Pangilinan, F.; Mills, J.L.; Signore, C.C.; Molloy, A.M.; Cotter, A.; Conley, M.; Cox, C.; Kirke, P.N.; Scott, J.M.; Brody, L.C.
A polymorphism in the MTHFD1 gene increases a mothers risk of having an unexplained second trimester pregnancy loss
Mol. Hum. Reprod.
11
477-480
2005
Homo sapiens
Manually annotated by BRENDA team
Christensen, K.E.; Rohlicek, C.V.; Andelfinger, G.U.; Michaud, J.; Bigras, J.L.; Richter, A.; Mackenzie, R.E.; Rozen, R.
The MTHFD1 p.Arg653Gln variant alters enzyme function and increases risk for congenital heart defects
Hum. Mutat.
30
212-220
2009
Homo sapiens (P11586)
Manually annotated by BRENDA team
Christensen, K.E.; Mackenzie, R.E.
Mitochondrial methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase, and formyltetrahydrofolate synthetases
Vitam. Horm.
79
393-410
2008
Homo sapiens, Saccharomyces cerevisiae (P07245), Saccharomyces cerevisiae (P09440)
Manually annotated by BRENDA team
Kruszyna, L.; Lianeri, M.; Rydzanicz, M.; Gajecka, M.; Szyfter, K.; Jagodzinski, P.P.
Polymorphic variants of folate metabolism genes and the risk of laryngeal cancer
Mol. Biol. Rep.
37
241-247
2010
Homo sapiens
Manually annotated by BRENDA team
Shin, M.; Momb, J.; Appling, D.R.
Human mitochondrial MTHFD2 is a dual redox cofactor-specific methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
Cancer Metab.
5
11
2017
Homo sapiens (P13995), Homo sapiens (Q9H903), Homo sapiens
Manually annotated by BRENDA team
Gustafsson, R.; Jemth, A.S.; Gustafsson, N.M.; Faernegardh, K.; Loseva, O.; Wiita, E.; Bonagas, N.; Dahllund, L.; Llona-Minguez, S.; Haeggblad, M.; Henriksson, M.; Andersson, Y.; Homan, E.; Helleday, T.; Stenmark, P.
Crystal structure of the emerging cancer target MTHFD2 in complex with a substrate-based inhibitor
Cancer Res.
77
937-948
2017
Homo sapiens (P13995), Homo sapiens
Manually annotated by BRENDA team
Hitzel, J.; Lee, E.; Zhang, Y.; Bibli, S.I.; Li, X.; Zukunft, S.; Pflueger, B.; Hu, J.; Schuermann, C.; Vasconez, A.E.; Oo, J.A.; Kratzer, A.; Kumar, S.; Rezende, F.; Josipovic, I.; Thomas, D.; Giral, H.; Schreiber, Y.; Geisslinger, G.; Fork, C.; Yang, X.; Sigala, F.; Romanoski, C.E.; Kroll, J.; Jo, H.; Lan, L.a.n.d.
Oxidized phospholipids regulate amino acid metabolism through MTHFD2 to facilitate nucleotide release in endothelial cells
Nat. Commun.
9
2292
2018
Homo sapiens (P13995), Homo sapiens
Manually annotated by BRENDA team