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Reference on EC 3.5.1.18 - succinyl-diaminopimelate desuccinylase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Boyen, A.; Charlier, D.; Charlier, J.; Sakanyan, V.; Mett, I.; Glansdorff, N.
Acetylornithine deacetylase, succinyldiaminopimelate desuccinylase and carboxypeptidase G2 are evolutionarily related
Gene
116
1-6
1992
Escherichia coli
Manually annotated by BRENDA team
Kindler, S.H.; Gilvarg, C.
N-succinyl-L-alpha, epsilon-diaminopimelic acid deacylase
J. Biol. Chem.
235
3552-3535
1960
Azotobacter vinelandii, Alcaligenes faecalis, Bacillus cereus, Corynebacterium diphtheriae, Escherichia coli, Micrococcus luteus, Cereibacter sphaeroides, Escherichia coli M-26-26, Bacillus cereus No.48292, Corynebacterium diphtheriae P.W.8
-
Manually annotated by BRENDA team
Born, T.L.; Zheng, R.; Blanchard, J.S.
Hydrolysis of N-succinyl-L,L-diaminopimelic acid by Haemophilus influenzae dapE-encoded desuccinylase: metal activation, solvent isotope effects, and kinetic mechanism
Biochemistry
37
10478-10487
1998
Haemophilus influenzae, Haemophilus influenzae RD
Manually annotated by BRENDA team
Born, T.L.; Blanchard, J.S.
Structure/function studies on enzymes in the diaminopimelate pathway of bacterial cell wall biosynthesis
Curr. Opin. Chem. Biol.
3
607-613
1999
Haemophilus influenzae
Manually annotated by BRENDA team
Bienvenue, D.L.; Gilner, D.M.; Davis, R.S.; Bennett, B.; Holz, R.C.
Substrate specificity, metal binding properties, and spectroscopic characterization of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae
Biochemistry
42
10756-10763
2003
Haemophilus influenzae
Manually annotated by BRENDA team
Davis, R.; Bienvenue, D.; Swierczek, S.I.; Gilner, D.M.; Rajagopal, L.; Bennett, B.; Holz, R.C.
Kinetic and spectroscopic characterization of the E134A- and E134D-altered dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae
J. Biol. Inorg. Chem.
11
206-216
2006
Haemophilus influenzae
Manually annotated by BRENDA team
Dea-Ayuela, M.A.; Rama-Iniguez, S.; Bolas-Fernandez, F.
Proteomic analysis of antigens from Leishmania infantum promastigotes
Proteomics
6
4187-4194
2006
Leishmania infantum
Manually annotated by BRENDA team
Gillner, D.; Armoush, N.; Holz, R.C.; Becker, D.P.
Inhibitors of bacterial N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) and demonstration of in vitro antimicrobial activity
Bioorg. Med. Chem. Lett.
19
6350-6352
2009
Haemophilus influenzae
Manually annotated by BRENDA team
Gillner, D.; Bienvenue, D.; Nocek, B.; Joachimiak, A.; Zachary, V.; Bennett, B.; Holz, R.
The dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae contains two active-site histidine residues
J. Biol. Inorg. Chem.
14
1-10
2009
Haemophilus influenzae
Manually annotated by BRENDA team
Nocek, B.P.; Gillner, D.M.; Fan, Y.; Holz, R.C.; Joachimiak, A.
Structural basis for catalysis by the mono- and dimetalated forms of the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase
J. Mol. Biol.
397
617-626
2010
Haemophilus influenzae (P44514), Haemophilus influenzae
Manually annotated by BRENDA team
Brunger, A.T.; Das, D.; Deacon, A.M.; Grant, J.; Terwilliger, T.C.; Read, R.J.; Adams, P.D.; Levitt, M.; Schroeder, G.F.
Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum
Acta Crystallogr. Sect. D
68
391-403
2012
Corynebacterium glutamicum (Q59284), Corynebacterium glutamicum, Corynebacterium glutamicum DSM 20300 (Q59284)
Manually annotated by BRENDA team
Uda, N.R.; Creus, M.
Selectivity of inhibition of N-succinyl-L,L-diaminopimelic acid desuccinylase in bacteria: the product of dapE-gene is not the target of L-captopril antimicrobial activity
Bioinorg. Chem. Appl.
2011
306465
2011
Salmonella enterica
Manually annotated by BRENDA team
Reinhard, L.; Mueller-Dieckmann, J.; Weiss, M.S.
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of succinyl-diaminopimelate desuccinylase (Rv1202, DapE) from Mycobacterium tuberculosis
Acta Crystallogr. Sect. F
68
1089-1093
2012
Mycobacterium tuberculosis (P9WHS9), Mycobacterium tuberculosis
Manually annotated by BRENDA team
Hlavacek, J.; Vitovcova, M.; Sazelova, P.; Picha, J.; Vanek, V.; Budesinsky, M.; Jiracek, J.; Gillner, D.M.; Holz, R.C.; Miksik, I.; Kasicka, V.
Mono-N-acyl-2,6-diaminopimelic acid derivatives: analysis by electromigration and spectroscopic methods and examination of enzyme inhibitory activity
Anal. Biochem.
467
4-13
2014
Haemophilus influenzae
Manually annotated by BRENDA team
Dutta, D.; Mishra, S.
The structural and energetic aspects of substrate binding and the mechanism of action of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) investigated using a hybrid QM/MM method
Phys. Chem. Chem. Phys.
16
26348-26358
2014
Haemophilus influenzae
Manually annotated by BRENDA team
Nocek, B.; Starus, A.; Makowska-Grzyska, M.; Gutierrez, B.; Sanchez, S.; Jedrzejczak, R.; Mack, J.C.; Olsen, K.W.; Joachimiak, A.; Holz, R.C.
The dimerization domain in DapE enzymes is required for catalysis
PLoS ONE
9
e93593
2014
Haemophilus influenzae, Vibrio cholerae (Q9KQ52), Vibrio cholerae
Manually annotated by BRENDA team
McGregor, W.C.; Gillner, D.M.; Swierczek, S.I.; Liu, D.; Holz, R.C.
Identification of a histidine metal ligand in the argE-encoded N-acetyl-L-ornithine deacetylase from Escherichia coli
SpringerPlus
2
482
2013
Haemophilus influenzae
Manually annotated by BRENDA team
Starus, A.; Nocek, B.; Bennett, B.; Larrabee, J.A.; Shaw, D.L.; Sae-Lee, W.; Russo, M.T.; Gillner, D.M.; Makowska-Grzyska, M.; Joachimiak, A.; Holz, R.C.
Inhibition of the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Neisseria meningitidis by L-captopril
Biochemistry
54
4834-4844
2015
Neisseria meningitidis (Q9JYL2), Neisseria meningitidis, Neisseria meningitidis MC58 (Q9JYL2)
Manually annotated by BRENDA team
Nocek, B.; Reidl, C.; Starus, A.; Heath, T.; Bienvenue, D.; Osipiuk, J.; Jedrzejczak, R.; Joachimiak, A.; Becker, D.P.; Holz, R.C.
Structural evidence of a major conformational change triggered by substrate binding in DapE enzymes impact on the catalytic mechanism
Biochemistry
57
574-584
2018
Haemophilus influenzae (P44514), Haemophilus influenzae, Haemophilus influenzae ATCC 51907 (P44514)
Manually annotated by BRENDA team
Mandal, R.; Das, S.
In silico approach towards identification of potential inhibitors of Helicobacter pylori DapE
J. Biomol. Struct. Dyn.
33
1460-1473
2015
Helicobacter pylori (O25002), Helicobacter pylori, Helicobacter pylori ATCC 700392 (O25002)
Manually annotated by BRENDA team
Dutta, D.; Mishra, S.
Loss of catalytic activity in the E134D, H67A, and H349A mutants of DapE mechanistic analysis with QM/MM investigation
J. Phys. Chem. B
120
11654-11664
2016
Haemophilus influenzae (P44514), Haemophilus influenzae ATCC 51907 (P44514)
Manually annotated by BRENDA team
Du, S.; Lutkenhaus, J.
The N-succinyl-L,L-diaminopimelic acid desuccinylase DapE acts through ZapB to promote septum formation in Escherichia coli
Mol. Microbiol.
105
326-345
2017
Escherichia coli
Manually annotated by BRENDA team
Heath, T.K.; Lutz, M.R.; Reidl, C.T.; Guzman, E.R.; Herbert, C.A.; Nocek, B.P.; Holz, R.C.; Olsen, K.W.; Ballicora, M.A.; Becker, D.P.
Practical spectrophotometric assay for the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase, a potential antibiotic target
PLoS ONE
13
e0196010
2018
Haemophilus influenzae
Manually annotated by BRENDA team
Usha, V.; Lloyd, A.J.; Roper, D.I.; Dowson, C.G.; Kozlov, G.; Gehring, K.; Chauhan, S.; Imam, H.T.; Blindauer, C.A.; Besra, G.S.
Reconstruction of diaminopimelic acid biosynthesis allows characterisation of Mycobacterium tuberculosis N-succinyl-L,L-diaminopimelic acid desuccinylase
Sci. Rep.
6
23191
2016
Mycobacterium tuberculosis (P9WHS9), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WHS9)
Manually annotated by BRENDA team