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Information on EC 3.4.22.47 - gingipain K and Organism(s) Porphyromonas gingivalis and UniProt Accession B2RLK2

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EC Tree
     3 Hydrolases
         3.4 Acting on peptide bonds (peptidases)
             3.4.22 Cysteine endopeptidases
                3.4.22.47 gingipain K
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This record set is specific for:
Porphyromonas gingivalis
UNIPROT: B2RLK2 not found.
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Word Map
The taxonomic range for the selected organisms is: Porphyromonas gingivalis
The enzyme appears in selected viruses and cellular organisms
Reaction Schemes
endopeptidase with strict specificity for lysyl bonds
Synonyms
lys-gingipain, gingipain k, lysine-specific gingipain, lysine gingipain, lysine-specific proteinase, k-gingipain, porphypain, lysine-specific gingipain proteinase, lys-specific cysteine proteinase gingipain, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
HbR
-
adhesin domain of gingipain which is able to bind heme as an iron nutrient source for Porphyromonas gingivalis
K-specific gingipain protease
-
-
Lys-gingipain
Lys-specific cysteine proteinase gingipain
-
-
lysine gingipain
-
-
lysine-sepcific cysteine protease
-
-
lysine-specific gingipain
-
-
lysine-specific gingipain K
-
-
lysine-specific gingipain protease
-
-
lysine-specific gingipain proteinase
-
-
lysine-specific proteinase
-
-
PrtP proteinase
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
endopeptidase with strict specificity for lysyl bonds
show the reaction diagram
active site structure, role of the Sn binding pocket, molecular basis for substrate specificity
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of peptide bond
-
-
-
-
CAS REGISTRY NUMBER
COMMENTARY hide
159745-69-4
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
elafin + H2O
?
show the reaction diagram
all three gingipains have the ability to degrade elafin (endogenous inhibitor secreted by epithelial cells)
-
-
?
MeoSuc-Ala-Ala-Pro-Val-4-nitroanilide + H2O
?
show the reaction diagram
-
-
-
?
acetyl-lysine-4-nitroanilide + H2O
acetyl-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
acid-soluble human placental type I collagen + H2O
fragments of acid-soluble human placental type I collagen
show the reaction diagram
-
-
-
-
?
adrenocorticotropic hormone fragment 11-24 + H2O
fragments of adrenocorticotropic hormone fragment 11-24
show the reaction diagram
-
-
-
?
benzyloxycarbonyl-L-Lys-p-nitroanilide + H2O
benzyloxycarbonyl-L-Lys + p-nitroaniline + H2O
show the reaction diagram
beta-endorphin + H2O
fragments of beta-endorphin
show the reaction diagram
-
-
-
?
bovine hemoglobin + H2O
fragments of bovine hemoglobin
show the reaction diagram
-
-
-
-
?
bovine serum albumin + H2O
fragments of bovine serum albumin
show the reaction diagram
-
-
-
-
?
bradykinin + H2O
fragments of bradykinin
show the reaction diagram
-
together with gingipain R, gingipain K induces vascular permeability enhancement in human plasma by cleaving bradykinin from high molecular weight kininogen
-
?
casein + H2O
fragments of casein
show the reaction diagram
-
-
-
-
?
CBZ-Phe-Arg-4-methyl-coumaryl-7-amide + H2O
?
show the reaction diagram
-
-
-
-
?
CD46 + H2O
?
show the reaction diagram
-
recombinant CD46 is degraded by Lys-gingipain in a dose-dependent manner
-
-
?
D-Val-Leu-Lys-p-nitroanilide + H2O
D-Val-Leu-Lys + p-nitroaniline
show the reaction diagram
D-Val-Phe-Lys-p-nitroanilide + H2O
D-Val-Phe-Lys + p-nitroaniline
show the reaction diagram
Fibrinogen + H2O
Fragments of fibrinogen
show the reaction diagram
focal adhesion kinase + H2O
?
show the reaction diagram
-
Kgp is responsible for degradation of integrin-related molecules
-
-
?
haptoglobin + H2O
fragments of haptoglobin
show the reaction diagram
-
human serum haptoglobin
-
?
Hemoglobin + H2O
?
show the reaction diagram
hemoglobin + H2O
fragments of hemoglobin
show the reaction diagram
-
human serum hemoglobin
-
?
hemopexin + H2O
fragments of hemopexin
show the reaction diagram
-
human serum hemopexin
-
?
human beta-defensin 3 + H2O
?
show the reaction diagram
-
-
-
-
?
human IgA + H2O
cleaved human IgA
show the reaction diagram
-
-
-
-
?
human IgG + H2O
fragments of human IgG
show the reaction diagram
-
-
-
-
?
IgG1 + H2O
?
show the reaction diagram
-
The heavy chain of IgG1 is cleaved at a single site within the hinge region, generating Fab and Fc fragments
-
-
?
IgG3 + H2O
?
show the reaction diagram
-
IgG3 is cleaved within the heavy chain and at several sites around the CH2 region
-
-
?
IL-6 + H2O
fragments of IL-6
show the reaction diagram
-
-
-
?
interleukin 8 + H2O
fragments of interleukin 8
show the reaction diagram
interleukin-1beta + H2O
?
show the reaction diagram
interleukin-6 + H2O
?
show the reaction diagram
interleukin-8 + H2O
?
show the reaction diagram
melittin + H2O
fragments of melittin
show the reaction diagram
-
-
-
?
Met-Lys-bradykinin + H2O
fragments of Met-Lys-bradykinin
show the reaction diagram
-
-
-
?
methemoglobin + H2O
?
show the reaction diagram
monocyte chemotactic protein 1 + H2O
fragments of monocyte chemotactic protein 1
show the reaction diagram
-
degradation of human monocyte chemotactic protein 1 in Porphyromonas gingivalis-infected human umbilical vein endothelial cells
-
?
N-(p-tosyl)-Gly-Pro-Lys 4-nitroanilide + H2O
?
show the reaction diagram
-
-
-
-
?
N-(p-tosyl)-Gly-Pro-Lys-4-nitroanilide + H2O
N-(p-tosyl)-Gly-Pro-Lys + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
N-4-tosyl-Gly-Pro-Lys-4-nitroanilide + H2O
N-4-tosyl-Gly-Pro-Lys + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
N-alpha-acetyl-L-lysine-4-nitroanilide + H2O
N-alpha-acetyl-L-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
N-alpha-acetyl-L-lysine-p-nitroanilide + H2O
N-alpha-acetyl-L-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
r
N-alpha-benzoyl-DL-lysine 4-nitroanilide + H2O
N-alpha-benzoyl-DL-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
N-alpha-benzyloxycarbonyl-L-lysine-4-nitroanilide + H2O
N-alpha-benzyloxycarbonyl-L-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
N-p-tosyl-Gly-Pro-Lys-4-nitroanilide + H2O
N-p-tosyl-Gly-Pro-Lys + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
N-p-tosyl-Gly-Pro-Lys-p-nitroanilide + H2O
N-p-tosyl-Gly-Pro-Lys + p-nitroaniline
show the reaction diagram
Nalpha-acetyl-L-lysine 4-nitroanilide + H2O
Nalpha-acetyl-L-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
Nalpha-benzyloxycarbonyl-L-lysine 4-nitroanilide + H2O
Nalpha-benzyloxycarbonyl-L-lysine + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
neurotensin + H2O
pGlu-Leu-Tyr-Glu-Asn-Lys + Pro-Arg-Arg-Pro-Tyr-Ile-Leu
show the reaction diagram
-
-
-
?
osteoprotegerin + H2O
?
show the reaction diagram
oxyhaemoglobin + H2O
?
show the reaction diagram
-
-
-
-
?
paxillin + H2O
?
show the reaction diagram
-
Kgp is responsible for degradation of integrin-related molecules
-
-
?
protease-activated receptor-2 + H2O
?
show the reaction diagram
-
specific substrate for Lys-gingipain
-
-
?
t-butyl-oxycarbonyl-L-Glu-L-Lys-L-Lys-4-methyl-7-coumarylamide + H2O
t-butyl-oxycarbonyl-L-Glu-L-Lys-L-Lys + 7-amino-4-methylcoumarin
show the reaction diagram
-
41% of activity with t-butyl-oxycarbonyl-L-Val-L-Leu-L-Lys-4-methyl-7-coumarylamide
-
?
t-butyl-oxycarbonyl-L-Val-L-Leu-L-Lys-4-methyl-7-coumarylamide + H2O
t-butyl-oxycarbonyl-L-Val-L-Leu-L-Lys + 7-amino-4-methylcoumarin
show the reaction diagram
-
gingipain K has a stron preference for substrates containing Lys in the p1 site
-
?
t-butyloxycarbonyl-Val-Leu-Lys-Phe-Arg-4-methyl-7-coumarylamide
t-butyl-oxycarbonyl-Val-Leu-Lys + Phe-Arg-4-methyl-7-coumarylaminde
show the reaction diagram
-
-
-
-
?
thrombomodulin + H2O
?
show the reaction diagram
-
Lys-gingipain and Arg-gingipain cleave thrombomodulin in vitro
-
-
?
TNFalpha + H2O
?
show the reaction diagram
transferrin + H2O
fragments of transferrin
show the reaction diagram
-
human serum transferrin
-
?
Val-Leu-Lys-4-nitroanilide + h2O
Val-Leu-Lys + 4-nitroaniline
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
elafin + H2O
?
show the reaction diagram
all three gingipains have the ability to degrade elafin (endogenous inhibitor secreted by epithelial cells)
-
-
?
bradykinin + H2O
fragments of bradykinin
show the reaction diagram
-
together with gingipain R, gingipain K induces vascular permeability enhancement in human plasma by cleaving bradykinin from high molecular weight kininogen
-
-
?
Fibrinogen + H2O
Fragments of fibrinogen
show the reaction diagram
-
most prominent target among plasma proteins
-
-
?
focal adhesion kinase + H2O
?
show the reaction diagram
-
Kgp is responsible for degradation of integrin-related molecules
-
-
?
Hemoglobin + H2O
?
show the reaction diagram
-
degradation, the enzyme forms a complex with the outer membrane receptor HmuR required for binding and utilization of hemoglobin and hemin, overview
-
-
?
interleukin 8 + H2O
fragments of interleukin 8
show the reaction diagram
interleukin-1beta + H2O
?
show the reaction diagram
-
biological inactivation and degradation, low activity, cytokine degradation is mainly the result of Lys-gingipain
-
-
?
interleukin-6 + H2O
?
show the reaction diagram
-
biological inactivation and degradation
-
-
?
interleukin-8 + H2O
?
show the reaction diagram
-
biological inactivation and degradation
-
-
?
methemoglobin + H2O
?
show the reaction diagram
-
degradation, ligation of methemoglobin with N3-, which effectively blocks heme dissociation from the protein, prevents hemoglobin breakdown
-
-
?
monocyte chemotactic protein 1 + H2O
fragments of monocyte chemotactic protein 1
show the reaction diagram
-
degradation of human monocyte chemotactic protein 1 in Porphyromonas gingivalis-infected human umbilical vein endothelial cells
-
-
?
osteoprotegerin + H2O
?
show the reaction diagram
-
digestion, enhanced osteoclastogenesis by Kgp, in co-cultures of mouse bone-marrow cells and osteoblasts, formation of multinucleated osteoclasts induced by 1alpha,25-dihydroxyvitamin D3 is augmented by Kgp. The specific enzymatic activity of Kgp is necessary for osteoclast formation, overview
-
-
?
paxillin + H2O
?
show the reaction diagram
-
Kgp is responsible for degradation of integrin-related molecules
-
-
?
protease-activated receptor-2 + H2O
?
show the reaction diagram
-
specific substrate for Lys-gingipain
-
-
?
TNFalpha + H2O
?
show the reaction diagram
-
degradation, leading to inhibition of biological functions of TNFalpha, overview
-
-
?
additional information
?
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Zn2+
-
enhances the inhibitory effect of chlorhexidine
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1-(3-phenylpropionyl)piperidine-3-(R,S)-carboxylic acid-[4-amino-1(S)-(benzothiazole-2-carbonyl)butyl] amide
-
reversible inhibition
benzamidine derivatives
-
-
benzyl-N-[(2S)-1-[[(3S)-7-amino-1-(benzylamino)-1,2-dioxoheptan-3-yl]amino]-5-(2-methyl-2-phenylhydrazinyl)-1,5-dioxopentan-2-yl]carbamate
i.e. KYT-36, peptide-derived, potent, bioavailable and highly selective inhibitor
benzyloxycarbonyl-L-phenylalanyl-L-lysyl-acyloxyketone
-
-
benzyloxycarbonyl-L-phenylalanyl-L-lysylacyloxyketone
-
the inhibitor completely abolishes osteoclastogenesis induced by Kgp
benzyloxycarbonyl-Phe-Lys-chloromethylketone
-
i.e. z-FKck, specific for Kgp
carbobenzoxy-Glu(NHN(CH3)Ph)-Lys-CO-NHCH2Ph
-
-
carbobenzoxy-Lys-Arg-CO-Lys-N-(CH3)2
-
-
cathepsin B inhibitor
-
-
-
Chlorhexidine
-
synergistic effect of Zn2+ in a 1:1 ratio of chlorhexidine and Zn2+
Chloromethyl ketones
-
development of diverse inhibitor derivatives: structure-based design, chemistry, and activity, specificity for the Sn binding pocket of the enzyme, overview
Chloromethylketones
-
-
CuSO4
-
1 mM, 79% inhibition
FeCl3
-
1 mM, 42% inhibition
Gly-Gly
-
200 mM, 50% inhibition
iodoacetamide
iodoacetic acid
-
1 mM, 76% inhibition
kappa-casein
-
inhibits proteolytic activity associated with Porphyromonas gingivalis whole cells, purified RgpA-Kgp proteinase-adhesin complexes, and purified RgpB proteinase. The peptide kappa-casein(109-137) exhibits synergism with Zn(II) against both Arg- and Lys-specific proteinases. Active region for inhibition is identified as kappa-casein (117-137). Kappa-casein inhibits in an uncompetitive manner
-
KYT-36
lactoferrin
-
inhibits both the Arg- and Lys-specific proteinase activities of Porphyromonas gingivalis whole cells by approximately 40% at 1 mg/ml and over 70% at 10 mg/ml. Lactoferrin inhibits both the Arg-specific and Lys-specific activities of purified Porphyromonas gingivalis 248 RgpA/Kgp proteinase-adhesin complexes by 96% at a concentration of 5 mg/mL
-
leupeptin
lysine
-
slight inhibition of coaggregation of Porphyromonas gingivalis with other oral bacteria by L-lysine and more slightly by D-lysine
MnSO4
-
1 mM, 50% inhibition
N-alpha-p-tosyl-L-lysine chloromethyl ketone
-
0.1 mM, complete inhibition
N-ethylmaleimide
Nalpha-benzoyl-Phe-Lys-chloromethyl ketone
-
a specific inhibitor of lysine gingipain
p-hydroxymercuribenzoate
-
0.2 mM, 68% inhibition
Phe-Pro-Arg-chloromethyl ketone
-
0.1 mM, 95% inhibition
porcine pancreatic secretory trypsin inhibitor
-
i.e. PSTI porcine, a Kazal-type serine proteinase inhibitor purified from pancreas, porcine pancreatic secretory trypsin inhibitor having an essential Lys residue at the P1 position of the reactive site, and containing Tyr and Asn residues the P2' and P3' sites, specifically inhibits the activity of the Lys-specific gingipain K, whereas bovine inhibitor, possessing a Arg residue at the P1 position, exhibits activity only against the Arg-specific cysteine proteinase gingipain K, EC 3.4.22.37. The association equilibrium constant is 0.51 mM
-
Pro-Phe-Arg-chloromethylketone
-
-
rice grain extract
-
a rice protein fraction is shown to have Rgp inhibitory activities. Comprehensive affinity chromatography and MS analyses results in the identification of 4 proteins a 26 kDa globulin, a plant lipid transfer/trypsin-alpha amylase inhibitor, the RA17 seed allergen, and an alpha amylase/trypsin inhibitor proteins accounting for 90% of the inhibitory activity. Inhibitory activity against Rgp is 20fold higher than that against Kgp
-
tetracycline
-
-
tosyl-L-lysine chloromethyl ketone
tosyl-L-phenylalanine chloromethyl ketone
-
1 mM, 99% inhibition
tosyl-Lys-chloromethylketone
-
-
Z-Phe-Lys-2,4,6-trimethyl-benzoyloxymethyl-ketone
-
specific inhibition of Kgp
Z-Phe-Lys-acyloxymethylketone
-
oxyhemoglobin-Kgp interactions resulting in formation of a hemoglobin hemichrome are inhibited by specific inhibitor Z-Phe-Lys-acyloxymethylketone
zFKck
-
human gingvial epithelial cells treated with Kgp-specific inhibitor leupeptin and challenged with Porphyromonas gingivalis cells do not undergo apoptosis
ZnCl2
-
1 mM, 50% inhibition
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2-mercaptoethanol
cysteine
dithiothreitol
EDTA
-
2 mM, 79% increase in activity
EGTA
-
2 mM, 79% increase in activity
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.18
benzyloxycarbonyl-L-Lys-p-nitroanilide
-
pH 8.5, 37°C
0.2
D-Val-Leu-Lys-p-nitroanilide
-
pH 8.5, 37°C
0.126
D-Val-Phe-Lys-p-nitroanilide
-
pH 8.5, 37°C
0.0029
hemoglobin
-
pH 7.6, 37°C, human serum hemoglobin
-
0.05
N-p-tosyl-Gly-Pro-Lys-p-nitroanilide
-
pH 8.5, 37°C
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
9.4
hemoglobin
-
pH 7.6, 37°C, human serum hemoglobin
-
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0000009
1-(3-phenylpropionyl)piperidine-3-(R,S)-carboxylic acid-[4-amino-1(S)-(benzothiazole-2-carbonyl)butyl]amide
-
-
additional information
additional information
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.26
-
substrate N-p-tosyl-Gly-Pro-Lys-p-nitroanilide
0.356
-
release of 7-amino-4-methylcoumarin
additional information
-
enzyme activity and hemoglobin/hemin binding in wild-type strain A7436 and in kgp-deficient mutant strains WS1, WS10, and WS15, overview
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.6 - 8.3
-
assay at
8.5
-
with protein substrates like azocasein
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6.5 - 9.5
-
hydrolysis of t-butyl-oxycarbonyl-L-Val-L-Leu-L-Lys-4-methyl-7-coumarylamide
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
Porphyromonas gingivalis secretes outer membrane vesicles that contain major virulence factors, including Arg-gingipain and Lys-gingipain
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
metabolism
-
Porphyromonas gingivalis Lys-gingipain (Kgp) facilitates heme acquisition by HmuY (heme-binding protein)
physiological function
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
105000
48000
-
x * 48000, SDS-PAGE
50000
-
SDS-PAGE
51000
-
1 * 51000, SDS-PAGE
52000
-
gel filtration
60000
80000
-
x * 80000, gelatin-containing SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
-
1 * 51000, SDS-PAGE
additional information
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
proteolytic modification
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
sitting drop vapor diffusion method
sitting-drop vapor diffusion method, high-resolution (1.20 A) complex structure of the enzyme with KYT-36. Sub-nanomolar inhibition of Kgp is achieved by tight binding to the active-site cleft, which is covered for its sub-sites S3 through S1' under establishment of nine hydrophobic interactions, 14 hydrogen bonds and one salt bridge. In addition, an inhibitor carbonyl carbon that mimics the scissile carbonyl of substrates is pyramidalized and just 2.02 A away from the catalytic nucleophile of Kgp, C477Sgamma
the crystal structure of a domain within the haemagglutinin region of Kgp is reported here. The K2 domain structure is a jellyroll fold with two anti-parallel beta-sheets. This fold topology is shared with adhesive domains from functionally diverse receptors such as MAM domains, ephrin receptor ligand binding domains and a number of carbohydrate binding modules
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
C476A
-
high Kgp activity and black pigmentation
C476A/C477A
-
no Kgp activity nor black pigmentation
C477A
-
no Kgp activity nor black pigmentation
additional information
pH STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
3.5
-
40% loss of activity after 5 min
638848
5 - 9
-
stable for several hours in the absence of cysteine, rapid loss of activity below pH 8.0 in the presence of cysteine
638843
5.5 - 10.5
-
0°C, no loss of activity
638848
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
-
no loss of activity
37
-
no loss of activity
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
Kgp shows a loss of only 1% and 8% of initial activity after 7 and 24 h, respectively
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
acetone precipitate, Sephadex G-150, arginine-Sepharose
-
ammonium sulfate, immunoaffinity column, Mono S
-
ammonium sulfate, Mono Q, chromatofocusing on MonoP
-
Lys-gingipain is purified from the cell envelope extract of Porphyromonas gingivalis KDP112 by affinity chromatography on arginine Sepharose 4B
-
native extracellular enzyme from culture medium
-
native Kgp from culture supernatant
-
native Lys-gingipain from cell culture supernatant, re-activation of the proteases by reducing the active-centre thiol group partially oxidized during the purification process
-
purified by using gel-filtration and arginine-Sepharose chromatography
-
using gel-filtration
-
using Ni-NTA chromatography and gel filtration
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in Sf9 insect cells
expression of wild-type and mutant enzymes in murine ST2 osteoblastic/stromal cells
-
HbR domain is recombinantly expressed in Escherichia coli
-
the gene fragment encoding the K2 domain (Ala1157-Gly1334) of Kgp from Porphyromonas gingivalis W83 is cloned into a modified vector pET-32a. The constructed plasmid is transformed into Escherichia coli BL21(DE3) competent cells for protein expression
-
APPLICATION
ORGANISM
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medicine
molecular biology
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Potempa, J.; Pike, R.; Travis, J.
The multiple forms of trypsin-like activity present in various strains of Porphyromonas gingivalis are due to the presence of either Arg-gingipain or Lys-gingipain
Infect. Immun.
63
1176-1182
1995
Porphyromonas gingivalis, Porphyromonas gingivalis H66
Manually annotated by BRENDA team
Bedi, G.S.
Purification and characterization of lysine- and arginine-specific gingivain proteases from Porphyromonas gingivalis
Prep. Biochem.
24
251-261
1994
Porphyromonas gingivalis
Manually annotated by BRENDA team
Pike, R.; McGraw, W.; Potempa, J.; Travis, J.
Lysine- and arginine-specific proteinases from Porphyromonas gingivalis. Isolation, characterization, and evidence for the existence of complexes with hemagglutinins
J. Biol. Chem.
269
406-411
1994
Porphyromonas gingivalis, Porphyromonas gingivalis H66
Manually annotated by BRENDA team
Potempa, J.; Travis, J.
Porphyromonas gingivalis proteinases in periodontitis, a review
Acta Biochim. Pol.
43
455-465
1996
Porphyromonas gingivalis
Manually annotated by BRENDA team
Pavloff, N.; Pemberton, P.A.; Potempa, J.; Chen, W.C.; Pike, R.N.; Prochazka, V.; Kiefer, M.C.; Travis, J.; Barr, P.J.
Molecular cloning and characterization of Porphyromonas gingivalis lysine-specific gingipain. A new member of an emerging family of pathogenic bacterial cysteine proteinases
J. Biol. Chem.
272
1595-1600
1997
Porphyromonas gingivalis (P72197), Porphyromonas gingivalis
Manually annotated by BRENDA team
Abe, N.; Kadowaki, T.; Okamoto, K.; Nakayama, K.; Ohishi, M.; Yamamoto, K.
Biochemical and functional properties of lysine-specific cysteine proteinase (Lys-gingipain) as a virulence factor of Porphyromonas gingivalis in periodontal disease
J. Biochem.
123
305-312
1998
Porphyromonas gingivalis
Manually annotated by BRENDA team
Fujimura, S.; Hirai, K.; Shibata, Y.; Nakayama, K.; Nakamura, T.
Comparative properties of envelope-associated arginine-gingipains and lysine-gingipain of Porphyromonas gingivalis
FEMS Microbiol. Lett.
163
173-179
1998
Porphyromonas gingivalis
Manually annotated by BRENDA team
Banbula, A.; Bugno, M.; Kuster, A.; Heinrich, P.C.; Travis, J.; Potempa, J.
Rapid and efficient inactivation of IL-6 gingipains, lysine- and arginine-specific proteinases from Porphyromonas Gingivalis
Biochem. Biophys. Res. Commun.
261
598-602
1999
Porphyromonas gingivalis
Manually annotated by BRENDA team
Sroka, A.; Sztukowska, M.; Potempa, J.; Travis, J.; Genco, C.A.
Degradation of host heme proteins by lysine- and arginine-specific cysteine proteinases (gingipains) of Porphyromonas gingivalis
J. Bacteriol.
183
5609-5616
2001
Porphyromonas gingivalis
Manually annotated by BRENDA team
Olczak, T.; Dixon, D.W.; Genco, C.A.
Binding specificity of the Porphyromonas gingivalis heme and hemoglobin receptor HmuR, gingipain K, and gingipain R1 for heme, porphyrins, and metalloporphyrins
J. Bacteriol.
183
5599-5608
2001
Porphyromonas gingivalis, Porphyromonas gingivalis HG66
Manually annotated by BRENDA team
Curtis, M.A.; Opoku, J.A.; Rangarajan, M.; Gallagher, A.; Sterne, J.A.C.; reid, C.R.; Evans, H.E.A.; Samuelsson, B.
Attenuation of the virulence of Porphyromonas gingivalis by using a specific synthetic Kgp protease inhibitor
Infect. Immun.
70
6968-6975
2002
Porphyromonas gingivalis
Manually annotated by BRENDA team
Nassar, H.; Chou, H.H.; Khlgatian, M.; Gibson, F.C., 3rd; Van Dyke, T.E.; Genco, C.A.
Role for fimbriae and lysine-specific cysteine proteinase gingipain K in expression of interleukin-8 and monocyte chemoattractant protein in Porphyromonas gingivalis-infected endothelial cells
Infect. Immun.
70
268-276
2002
Porphyromonas gingivalis
Manually annotated by BRENDA team
Baba, A.; Kadowaki, T.; Asao, T.; Yamamoto, K.
Roles for Arg- and Lys-gingipains in the disruption of cytokine responses and loss of viability of human endothelial cells by Porphyromonas gingivalis infection
Biol. Chem.
383
1223-1230
2002
Porphyromonas gingivalis
Manually annotated by BRENDA team
Simpsonv, W.; Olczak, T.; Genco, C.A.
Lysine-specific gingipain K and heme/hemoglobin receptor HmuR are involved in heme utilization in Porphyromonas gingivalis
Acta Biochim. Pol.
51
253-262
2004
Porphyromonas gingivalis
Manually annotated by BRENDA team
Smalley, J.W.; Thomas, M.F.; Birss, A.J.; Withnall, R.; Silver, J.
A combination of both arginine- and lysine-specific gingipain activity of Porphyromonas gingivalis is necessary for the generation of the micro-oxo bishaem-containing pigment from haemoglobin
Biochem. J.
379
833-840
2004
Porphyromonas gingivalis
Manually annotated by BRENDA team
Abe, N.; Baba, A.; Takii, R.; Nakayama, K.; Kamaguchi, A.; Shibata, Y.; Abiko, Y.; Okamoto, K.; Kadowaki, T.; Yamamoto, K.
Roles of Arg- and Lys-gingipains in coaggregation of Porphyromonas gingivalis: identification of its responsible molecules in translation products of rgpA, kgp, and hagA genes
Biol. Chem.
385
1041-1047
2004
Porphyromonas gingivalis
Manually annotated by BRENDA team
Liu, X.; Sroka, A.; Potempa, J.; Genco, C.A.
Coordinate expression of the Porphyromonas gingivalis lysine-specific gingipain proteinase, Kgp, arginine-specific gingipain proteinase, RgpA, and the heme/hemoglobin receptor, HmuR
Biol. Chem.
385
1049-1057
2004
Porphyromonas gingivalis
Manually annotated by BRENDA team
Mezyk-Kopec, R.; Bzowska, M.; Potempa, J.; Bzowska, M.; Jura, N.; Sroka, A.; Black, R.A.; Bereta, J.
Inactivation of membrane tumor necrosis factor alpha by gingipains from Porphyromonas gingivalis
Infect. Immun.
73
1506-1514
2005
Porphyromonas gingivalis
Manually annotated by BRENDA team
Bialas, A.; Grembecka, J.; Krowarsch, D.; Otlewski, J.; Potempa, J.; Mucha, A.
Exploring the Sn binding pockets in gingipains by newly developed inhibitors: structure-based design, chemistry, and activity
J. Med. Chem.
49
1744-1753
2006
Porphyromonas gingivalis, Porphyromonas gingivalis HG66
Manually annotated by BRENDA team
Kishimoto, M.; Yoshimura, A.; Naito, M.; Okamoto, K.; Yamamoto, K.; Golenbock, D.T.; Hara, Y.; Nakayama, K.
Gingipains inactivate a cell surface ligand on Porphyromonas gingivalis that induces TLR2-and TLR4-independent signaling
Microbiol. Immunol.
50
315-325
2006
Porphyromonas gingivalis
Manually annotated by BRENDA team
Sztukowska, M.; Sroka, A.; Bugno, M.; Banbula, A.; Takahashi, Y.; Pike, R.N.; Genco, C.A.; Travis, J.; Potempa, J.
The C-terminal domains of the gingipain K polyprotein are necessary for assembly of the active enzyme and expression of associated activities
Mol. Microbiol.
54
1393-1408
2004
Porphyromonas gingivalis
Manually annotated by BRENDA team
Cronan, C.A.; Potempa, J.; Travis, J.; Mayo, J.A.
Inhibition of Porphyromonas gingivalis proteinases (gingipains) by chlorhexidine: synergistic effect of Zn(II)
Oral Microbiol. Immunol.
21
212-217
2006
Porphyromonas gingivalis
Manually annotated by BRENDA team
Smalley, J.W.; Birss, A.J.; Szmigielski, B.; Potempa, J.
Sequential action of R- and K-specific gingipains of Porphyromonas gingivalis in the generation of the haem-containing pigment from oxyhemoglobin
Arch. Biochem. Biophys.
465
44-49
2007
Porphyromonas gingivalis
Manually annotated by BRENDA team
Ishida, Y.; Hu, J.; Sakai, E.; Kadowaki, T.; Yamamoto, K.; Tsukuba, T.; Kato, Y.; Nakayama, K.; Okamoto, K.
Determination of active site of lysine-specific cysteine proteinase (Lys-gingipain) by use of a Porphyromonas gingivalis plasmid system
Arch. Oral Biol.
56
538-544
2008
Porphyromonas gingivalis
Manually annotated by BRENDA team
Slaney, J.M.; Gallagher, A.; Aduse-Opoku, J.; Pell, K.; Curtis, M.A.
Mechanisms of resistance of Porphyromonas gingivalis to killing by serum complement
Infect. Immun.
74
5352-5361
2006
Porphyromonas gingivalis
Manually annotated by BRENDA team
Hashimoto, M.; Kadowaki, T.; Tsukuba, T.; Yamamoto, K.
Selective proteolysis of apolipoprotein B-100 by Arg-gingipain mediates atherosclerosis progression accelerated by bacterial exposure
J. Biochem.
140
713-723
2006
Porphyromonas gingivalis
Manually annotated by BRENDA team
Smalley, J.W.; Birss, A.J.; Szmigielski, B.; Potempa, J.
The HA2 haemagglutinin domain of the lysine-specific gingipain (Kgp) of Porphyromonas gingivalis promotes micro-oxo bishaem formation from monomeric iron(III) protoporphyrin IX
Microbiology
152
1839-1845
2006
Porphyromonas gingivalis
Manually annotated by BRENDA team
Yasuhara, R.; Miyamoto, Y.; Takami, M.; Imamura, T.; Potempa, J.; Yoshimura, K.; Kamijo, R.
Lysine-specific gingipain promotes lipopolysaccharide- and active-vitamin D3-induced osteoclast differentiation by degrading osteoprotegerin
Biochem. J.
419
159-166
2009
Porphyromonas gingivalis, Porphyromonas gingivalis HG66
Manually annotated by BRENDA team
Smalley, J.W.; Birss, A.J.; Szmigielski, B.; Potempa, J.
Mechanism of methaemoglobin breakdown by the lysine-specific gingipain of the periodontal pathogen Porphyromonas gingivalis
Biol. Chem.
389
1235-1238
2008
Porphyromonas gingivalis
Manually annotated by BRENDA team
Uehara, A.; Imamura, T.; Potempa, J.; Travis, J.; Takada, H.
Gingipains from Porphyromonas gingivalis synergistically induce the production of proinflammatory cytokines through protease-activated receptors with Toll-like receptor and NOD1/2 ligands in human monocytic cells
Cell. Microbiol.
10
1181-1189
2008
Porphyromonas gingivalis
Manually annotated by BRENDA team
Ishiguro, I.; Saiki, K.; Konishi, K.
PG27 is a novel membrane protein essential for a Porphyromonas gingivalis protease secretion system
FEMS Microbiol. Lett.
292
261-267
2009
Porphyromonas gingivalis, Porphyromonas gingivalis W83
Manually annotated by BRENDA team
Uehara, A.; Naito, M.; Imamura, T.; Potempa, J.; Travis, J.; Nakayama, K.; Takada, H.
Dual regulation of interleukin-8 production in human oral epithelial cells upon stimulation with gingipains from Porphyromonas gingivalis
J. Med. Microbiol.
57
500-507
2008
Porphyromonas gingivalis, Porphyromonas gingivalis HG66
Manually annotated by BRENDA team
Bania, J.; Kubiak, A.; Wojtachnio, K.; Polanowski, A.
Pancreatic secretory trypsin inhibitor acts as an effective inhibitor of cysteine proteinases gingipains from Porphyromonas gingivalis
J. Periodont. Res.
43
232-236
2008
Porphyromonas gingivalis
Manually annotated by BRENDA team
Kato, T.; Tsuda, T.; Inaba, H.; Kawai, S.; Okahashi, N.; Shibata, Y.; Abiko, Y.; Amano, A.
Porphyromonas gingivalis gingipains cause G(1) arrest in osteoblastic/stromal cells
Oral Microbiol. Immunol.
23
158-164
2008
Porphyromonas gingivalis, Porphyromonas gingivalis ATCC 33277
Manually annotated by BRENDA team
Stathopoulou, P.G.; Benakanakere, M.R.; Galicia, J.C.; Kinane, D.F.
The host cytokine response to Porphyromonas gingivalis is modified by gingipains
Oral Microbiol. Immunol.
24
11-17
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Taiyoji, M.; Shitomi, Y.; Taniguchi, M.; Saitoh, E.; Ohtsubo, S.
Identification of proteinaceous inhibitors of a cysteine proteinase (an Arg-specific gingipain) from Porphyromonas gingivalis in rice grain, using targeted-proteomics approaches
J. Proteome Res.
8
5165-5174
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Kantyka, T.; Latendorf, T.; Wiedow, O.; Bartels, J.; Glaeser, R.; Dubin, G.; Schroeder, J.M.; Potempa, J.; Meyer-Hoffert, U.
Elafin is specifically inactivated by RgpB from Porphyromonas gingivalis by distinct proteolytic cleavage
Biol. Chem.
390
1313-1320
2009
Porphyromonas gingivalis (B2RLK2)
Manually annotated by BRENDA team
Stathopoulou, P.; Galicia, J.; Benakanakere, M.; Garcia, C.; Potempa, J.; Kinane, D.
Porphyromonas gingivalis induce apoptosis in human gingival epithelial cells through a gingipain-dependent mechanism
BMC Microbiol.
9
107
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Kuboniwa, M.; Amano, A.; Hashino, E.; Yamamoto, Y.; Inaba, H.; Hamada, N.; Nakayama, K.; Tribble, G.D.; Lamont, R.J.; Shizukuishi, S.
Distinct roles of long/short fimbriae and gingipains in homotypic biofilm development by Porphyromonas gingivalis
BMC Microbiol.
9
105
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Saiki, K.; Konishi, K.
The role of Sov protein in the secretion of gingipain protease virulence factors of Porphyromonas gingivalis
FEMS Microbiol. Lett.
302
166-174
2010
Porphyromonas gingivalis
Manually annotated by BRENDA team
Haruyama, K.; Yoshimura, A.; Naito, M.; Kishimoto, M.; Shoji, M.; Abiko, Y.; Hara, Y.; Nakayama, K.
Identification of a gingipain-sensitive surface ligand of Porphyromonas gingivalis that induces Toll-like receptor 2- and 4-independent NF-kappaB activation in CHO cells
Infect. Immun.
77
4414-4420
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Furuta, N.; Takeuchi, H.; Amano, A.
Entry of Porphyromonas gingivalis outer membrane vesicles into epithelial cells causes cellular functional impairment
Infect. Immun.
77
4761-4770
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Nhien, N.T.; Huy, N.T.; Naito, M.; Oida, T.; Uyen, D.T.; Huang, M.; Kikuchi, M.; Harada, S.; Nakayama, K.; Hirayama, K.; Kamei, K.
Neutralization of toxic haem by Porphyromonas gingivalis haemoglobin receptor
J. Biochem.
147
317-325
2010
Porphyromonas gingivalis
Manually annotated by BRENDA team
Fitzpatrick, R.E.; Aprico, A.; Wijeyewickrema, L.C.; Pagel, C.N.; Wong, D.M.; Potempa, J.; Mackie, E.J.; Pike, R.N.
High molecular weight gingipains from Porphyromonas gingivalis induce cytokine responses from human macrophage-like cells via a nonproteolytic mechanism
J. Innate Immun.
1
109-117
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Inomata, M.; Ishihara, Y.; Matsuyama, T.; Imamura, T.; Maruyama, I.; Noguchi, T.; Matsushita, K.
Degradation of vascular endothelial thrombomodulin by arginine- and lysine-specific cysteine proteases from Porphyromonas gingivalis
J. Periodontol.
80
1511-1517
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Giacaman, R.A.; Asrani, A.C.; Ross, K.F.; Herzberg, M.C.
Cleavage of protease-activated receptors on an immortalized oral epithelial cell line by Porphyromonas gingivalis gingipains
Microbiology
155
3238-3246
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Li, N.; Yun, P.; Nadkarni, M.; Ghadikolaee, N.; Nguyen, K.; Lee, M.; Hunter, N.; Collyer, C.
Structure determination and analysis of a haemolytic gingipain adhesin domain from Porphyromonas gingivalis
Mol. Microbiol.
76
861-873
2010
Porphyromonas gingivalis
Manually annotated by BRENDA team
Mahtout, H.; Chandad, F.; Rojo, J.M.; Grenier, D.
Porphyromonas gingivalis mediates the shedding and proteolysis of complement regulatory protein CD46 expressed by oral epithelial cells
Oral Microbiol. Immunol.
24
396-400
2009
Porphyromonas gingivalis
Manually annotated by BRENDA team
Toh, E.C.; Dashper, S.G.; Huq, N.L.; Attard, T.J.; OBrien-Simpson, N.M.; Chen, Y.Y.; Cross, K.J.; Stanton, D.P.; Paolini, R.A.; Reynolds, E.C.
Porphyromonas gingivalis cysteine proteinase inhibition by kappa-casein peptides
Antimicrob. Agents Chemother.
55
1155-1161
2011
Porphyromonas gingivalis
Manually annotated by BRENDA team
Dashper, S.G.; Pan, Y.; Veith, P.D.; Chen, Y.Y.; Toh, E.C.; Liu, S.W.; Cross, K.J.; Reynolds, E.C.
Lactoferrin inhibits Porphyromonas gingivalis proteinases and has sustained biofilm inhibitory activity
Antimicrob. Agents Chemother.
56
1548-1556
2012
Porphyromonas gingivalis
Manually annotated by BRENDA team
Vincents, B.; Guentsch, A.; Kostolowska, D.; von Pawel-Rammingen, U.; Eick, S.; Potempa, J.; Abrahamson, M.
Cleavage of IgG1 and IgG3 by gingipain K from Porphyromonas gingivalis may compromise host defense in progressive periodontitis
FASEB J.
25
3741-3750
2011
Porphyromonas gingivalis
Manually annotated by BRENDA team
Maisetta, G.; Brancatisano, F.; Esin, S.; Campa, M.; Batoni, G.
Gingipains produced by Porphyromonas gingivalis ATCC49417 degrade human-beta-defensin 3 and affect peptides antibacterial activity in vitro
Peptides
32
1073-1077
2011
Porphyromonas gingivalis
Manually annotated by BRENDA team
Smalley, J.; Byrne, D.; Birss, A.; Wojtowicz, H.; Sroka, A.; Potempa, J.; Olczak, T.
HmuY haemophore and gingipain proteases constitute a unique syntrophic system of haem acquisition by Porphyromonas gingivalis
PLoS ONE
6
e17182
2011
Porphyromonas gingivalis
Manually annotated by BRENDA team
Pomowski, A.; Uson, I.; Nowakowska, Z.; Veillard, F.; Sztukowska, M.N.; Guevara, T.; Goulas, T.; Mizgalska, D.; Nowak, M.; Potempa, B.; Huntington, J.A.; Potempa, J.; Gomis-Rueth, F.X.
Structural insights unravel the zymogenic mechanism of the virulence factor gingipain K from Porphyromonas gingivalis, a causative agent of gum disease from the human oral microbiome
J. Biol. Chem.
292
5724-5735
2017
Porphyromonas gingivalis (Q51817), Porphyromonas gingivalis, Porphyromonas gingivalis W83 (Q51817)
Manually annotated by BRENDA team
Guevara, T.; Rodriguez-Banqueri, A.; Lasica, A.M.; Ksiazek, M.; Potempa, B.A.; Potempa, J.; Gomis-Rueth, F.X.
Structural determinants of inhibition of Porphyromonas gingivalis gingipain K by KYT-36, a potent, selective, and bioavailable peptidase inhibitor
Sci. Rep.
9
4935
2019
Porphyromonas gingivalis (Q51817), Porphyromonas gingivalis, Porphyromonas gingivalis W83 (Q51817)
Manually annotated by BRENDA team