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Information on EC 3.2.1.62 - glycosylceramidase and Organism(s) Homo sapiens and UniProt Accession P09848

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IUBMB Comments
The enzyme, found in the intestinal mucosa, hydrolyses beta-D-glucosyl and beta-D-galactosyl residues from a very broad range of substrates using a retaining mechanism. Characterized substrates include glucosyl- and galactosyl-ceramides , O3-, O4'- and O7-glucosylated flavonoids , and the 2'-O-glucosylated dihydrochalcone phlorizin . The enzyme includes two glycosyl hydrolase domains, both belonging to the GH1 family. While one domain is responsible for the activity described here, the other catalyses the reaction of EC 3.2.1.108, lactase [4,5]. cf. EC 3.2.1.45, glucosylceramidase and EC 3.2.1.46, galactosylceramidase.
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Homo sapiens
UNIPROT: P09848
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Word Map
The taxonomic range for the selected organisms is: Homo sapiens
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria
Synonyms
lactase-phlorizin hydrolase, phlorizin hydrolase, cerebrosidase, endoglycoceramidase ii, egcrp1, glycosylceramidase, egcii, endoglycoceramidase-related protein 1, phloretin-glucosidase, endo-glycoceramidase ii, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
lactase-phlorizin hydrolase
-
cerebrosidase
-
-
-
-
Gcase
-
-
glycosyl ceramide glycosylhydrolase
-
-
-
-
glycosyl-N-acylsphingosine glycohydrolase
-
-
glycosylceramidase
-
-
Klotho-related protein
-
KlrP, novel cytosolic neutral glycosylceramidase
lactase phlorizin hydrolase
-
-
lactase-phlorizin hydrolase
LCT
-
-
-
-
phloretin-glucosidase
-
-
-
-
phloridzin glucosidase
-
-
-
-
phlorizin beta-glucosidase
-
-
-
-
phlorizin hydrolase
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of O-glycosyl bond
PATHWAY SOURCE
PATHWAYS
-
-, -, -, -, -, -
SYSTEMATIC NAME
IUBMB Comments
beta-D-glucosyl-N-acylsphingosine glycohydrolase (configuration-retaining)
The enzyme, found in the intestinal mucosa, hydrolyses beta-D-glucosyl and beta-D-galactosyl residues from a very broad range of substrates using a retaining mechanism. Characterized substrates include glucosyl- and galactosyl-ceramides [3], O3-, O4'- and O7-glucosylated flavonoids [6], and the 2'-O-glucosylated dihydrochalcone phlorizin [1]. The enzyme includes two glycosyl hydrolase domains, both belonging to the GH1 family. While one domain is responsible for the activity described here, the other catalyses the reaction of EC 3.2.1.108, lactase [4,5]. cf. EC 3.2.1.45, glucosylceramidase and EC 3.2.1.46, galactosylceramidase.
CAS REGISTRY NUMBER
COMMENTARY hide
9033-10-7
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
2-nitrophenyl beta-D-galactopyranoside + H2O
2-nitrophenol + beta-D-galactose
show the reaction diagram
4-methylumbelliferyl-beta-D-galactopyranoside + H2O
4-methylumbelliferone + D-galactose
show the reaction diagram
-
-
-
-
?
4-methylumbelliferyl-beta-D-glucopyranoside + H2O
4-methylumbelliferone + D-glucose
show the reaction diagram
-
-
-
-
?
4-nitrophenyl beta-D-galactopyranoside + H2O
4-nitrophenol + beta-D-galactose
show the reaction diagram
4-nitrophenyl beta-D-glucopyranoside + H2O
4-nitrophenol + beta-D-glucose
show the reaction diagram
4-O-beta-D-galactopyranosyl-D-glucopyranoside + H2O
D-galactose + beta-D-glucose
show the reaction diagram
4-O-beta-D-glucopyranosyl-D-glucose + H2O
beta-D-glucose + D-glucose
show the reaction diagram
6-O-beta-D-glucopyranosyl-D-glucose + H2O
beta-D-glucose + D-glucose
show the reaction diagram
C18-galactosylceramide + H2O
C18-ceramide + D-galactose
show the reaction diagram
-
-
-
-
?
C18-glucosylceramide + H2O
C18-ceramide + D-glucose
show the reaction diagram
-
-
-
-
?
C6-4-nitrobenzo-2-oxa-1,3-diazole-galactosylceramide + H2O
C6-4-nitrobenzo-2-oxa-1,3-diazole-ceramide + D-galactose
show the reaction diagram
-
-
-
-
?
C6-4-nitrobenzo-2-oxa-1,3-diazole-glucosylceramide + H2O
C6-4-nitrobenzo-2-oxa-1,3-diazole-ceramide + D-glucose
show the reaction diagram
-
C6-NBD-glucosylceramide
-
-
?
cellotetraose + H2O
? + beta-D-glucose
show the reaction diagram
-
considerable activity
-
?
cellotriose + H2O
? + beta-D-glucose
show the reaction diagram
-
considerable activity
-
?
cellulose + H2O
? + beta-D-glucose
show the reaction diagram
-
very low activity
-
?
galactosylceramide + H2O
ceramide + D-galactose
show the reaction diagram
-
-
-
-
?
galactosylsphingosine + H2O
sphingosine + D-galactose
show the reaction diagram
-
-
-
-
?
glucosylceramide + H2O
ceramide + D-glucose
show the reaction diagram
-
no activity with alpha-galactosylceramide, lactosylceramide, ganglioside M1a and sulfatides
-
-
?
glucosylsphingosine + H2O
beta-D-glucose + N-acylsphingosine
show the reaction diagram
-
-
-
-
?
glycosyl-N-acylsphingosine + H2O
N-acylsphingosine + a sugar
show the reaction diagram
-
-
-
-
?
lactose + H2O
D-glucose + D-galactose
show the reaction diagram
-
-
-
-
?
p-nitrophenyl-beta-cellobioside + H2O
p-nitrophenyl-beta-D-glucoside + D-glucose
show the reaction diagram
-
-
-
-
?
p-nitrophenyl-beta-lactoside + H2O
p-nitrophenyl-beta-D-glucoside + D-galactose
show the reaction diagram
-
-
-
-
?
p-nitrophenyl-beta-maltoside + H2O
p-nitrophenol-beta-D-glucoside + D-glucose
show the reaction diagram
-
-
-
-
?
phlorizin + H2O
?
show the reaction diagram
-
-
-
-
?
phlorizin + H2O
phloretin + beta-D-glucose
show the reaction diagram
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
4-O-beta-D-galactopyranosyl-D-glucopyranoside + H2O
D-galactose + beta-D-glucose
show the reaction diagram
4-O-beta-D-glucopyranosyl-D-glucose + H2O
beta-D-glucose + D-glucose
show the reaction diagram
6-O-beta-D-glucopyranosyl-D-glucose + H2O
beta-D-glucose + D-glucose
show the reaction diagram
cellotetraose + H2O
? + beta-D-glucose
show the reaction diagram
-
considerable activity
-
?
cellotriose + H2O
? + beta-D-glucose
show the reaction diagram
-
considerable activity
-
?
cellulose + H2O
? + beta-D-glucose
show the reaction diagram
-
very low activity
-
?
phlorizin + H2O
?
show the reaction diagram
-
-
-
-
?
phlorizin + H2O
phloretin + beta-D-glucose
show the reaction diagram
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NSP4
-
secreted non-structural rotavirus protein
-
phlorizin
Tris(hydroxymethyl)aminomethane
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
sodium cholate
-
increases the solubility of the substrates
additional information
-
presence of Rab8T22N–CFP results in an increase in LPH–YFP-containing vesicular structures
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
4.64
(6-[N-(7-nitrobenz-2-oxa-1,3 diazol-4-yl)amino]hexanoyl)-beta-D-glucosylceramide
-
-
144.5
4-methylumbelliferyl-beta-D-galactopyranoside
-
-
49.28
4-methylumbelliferyl-beta-D-glucopyranoside
-
-
14 - 21
4-O-beta-D-galactopyranosyl-D-glucopyranoside
4.4
4-O-beta-D-glucopyranosyl-D-glucospyranoside
-
-
9.24
C18-galactosylceramide
-
-
13.67
C18-glucosylceramide
-
-
2.04
C6-4-nitrobenzo-2-oxa-1,3-diazole-galctosylceramide
-
-
28.9 - 30
lactose
0.542 - 18.13
p-nitrophenyl-beta-cellobioside
1.67 - 21.62
p-nitrophenyl-beta-lactoside
2.82 - 5.12
p-nitrophenyl-beta-maltoside
0.44
phlorizin
-
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.00164
-
in non infected cells, cell homogenates
0.00167
-
in cells infected with rhesus monkey rotavirus, cell homogenates
0.001875
-
activity in CHOP cell lysates transformed with cDNA encoding KlrP, with conduritol B epoxide, C6-4-nitrobenzo-2-oxa-1,3-diazole-glucosylceramide as substrate
0.00219
-
in cells infected with rhesus monkey rotavirus, in brush border-membrane enriched fraction
0.0028
-
in cells infected with rhesus monkey rotavirus and NSP4 neutralizing antibodies, in brush border-membrane enriched fraction
0.00334
-
in non infected cells, in brush border-membrane enriched fraction
0.00359
-
in cells infected with inactivated rhesus monkey rotavirus, in brush border-membrane enriched fraction
0.00375
-
activity in CHOP cell lysates transformed with cDNA encoding KlrP, without conduritol B epoxide, C6-4-nitrobenzo-2-oxa-1,3-diazole-glucosylceramide as substrate
0.0052
-
activity in CHOP cell lysates transformed with cDNA encoding KlrP, with conduritol B epoxide, C6-4-nitrobenzo-2-oxa-1,3-diazole-galactosylceramide as substrate
0.0066
-
activity in CHOP cell lysates transformed with cDNA encoding KlrP, without conduritol B epoxide, C6-4-nitrobenzo-2-oxa-1,3-diazole-galactosylceramide as substrate
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.8 - 6
-
-
6 - 7
-
C6-4-nitrobenzo-2-oxa-1,3-diazole-glucosylceramide as substrate
7.5
-
assay at
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5 - 8
-
-
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
37
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
UniProt
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
transfected Cos-1 cells
Manually annotated by BRENDA team
additional information
-
sequential passage of LPH through Rab4-, Rab8- and Rab11-containing compartments. Trafficking of LPH from the TGN to the cell surface can be modulated by dominant-negative Rab8
-
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
-
The profragment, LPHalpha, comprises homologous domains I and II and functions as an intramolecular chaperone in the context of the brush-border LPHbeta region of LPH
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
LPH_HUMAN
1927
1
218587
Swiss-Prot
Secretory Pathway (Reliability: 1)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
145000
-
SDS-PAGE, mature form
160000
215000
220000
230000
-
mannose-rich form, SDS-PAGE
245000
-
high-mannose precursor form, SDS-PAGE
280000
-
gel filtration, hydrophilic form
320000
-
gel filtration, amphiphilic form
57000
-
SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
monomer
-
1 * 160000, SDS-PAGE, mature brush-border form after proteolytic cleavage of the precursor form
additional information
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
glycoprotein
membrane anchored type I glycoprotein
glycoprotein
proteolytic modification
-
pro-enzyme is cleaved in trans-Golgi network between Arg734 and Leu735, pro-region of enzyme is an intramolecular chaperone, analysis of processing and folding
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
of the recombinant protein with the hanging drops by vapor diffusion method
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D1711N
E165D
-
reduced activity
E165Q
-
almost no activity
E373D
-
reduced activity
E373Q
-
almost no activity
G1363S
-
the mutant protein is malfolded and enzymatically inactive and can not exit the endoplasmic reticulum. The mutation creates an additional N-glycosylation site that is characteristic of a temperature-sensitive protein. The potential glycosylation site generated by the mutation is not the cause of defective trafficking of LPH-G1363S or its reduced enzymatic activity. Intracellular transport and enzymatic activity, but not correct folding are partially restored by expression at 20°C. The mutant is responsible for an increased turnover rate
G1363S/N1361A
-
eliminates the N-glycosylation site, does not restore the features of wild-type LPH
I1697N
P1743S
additional information
pH STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4.2 - 9
-
little activity outside this range
208756
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4
-
no detectable loss of activity for several weeks
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
sensitive to repeated freezing and thawing
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-20°C, several months
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
by magnesium precipitation method
-
Helix pomatia lectin chromatography
-
of the recombinant protein by a hi-trap chelating HP column and superdex 200 column chromatography
-
to homogeneity, immunoadsorbent chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
COS-1 cells triple transfected with LPH–CFP, SI–YFP and Rab4, Rab8 or Rab11 fused to DsRed. MDCK cells stably expressing LPHmyc
-
expression in Chinese hamster ovary-derived cells expressing polyoma LT antigen, in HEK293 cells cotransfected with in KlrP siRNA, overexpression in Escherichia coli
-
expression in Cos-1 cells
-
expression of mutants in Cos-7 cells
-
genotyping
-
mutant G1363S introduced into the wild-type LPH cDNA cloned in the vector pSG5. Mutant transiently expressed in COS-1 cells
-
transient expression of wild-type and domain deletion mutant enzymes and isolated enzyme domains in Cos-1 cells, expression in MDCK cells
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
additional information
-
regulation of LPH exocytosis by multiple Rab GTPases
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Jacob, R.; Weiner, J.R.; Stadge, S.; Naim, H.Y.
Additional N-glycosylation and its impact on the folding of intestinal lactase-phlorizin hydrolase
J. Biol. Chem.
275
10630-10637
2000
Homo sapiens
Manually annotated by BRENDA team
Wuthrich, M.; Sterchi, E.E.
Human lactase-phloizin hydrolase expressed in Cos-1 cells is proteolytically processed by the lysosomal pathway
FEBS Lett.
405
321-327
1997
Homo sapiens
Manually annotated by BRENDA team
Naim, H.Y.
The pro-region of human intestinale lactase-phlorizin hydrolase is enzymatically inactive towards lactose
Biol. Chem. Hoppe-Seyler
376
255-258
1995
Homo sapiens
Manually annotated by BRENDA team
Naim, H.Y.
Processing and transport of human small intestinal lactase-phlorizin hydrolase (LPH). Role of N-linked oligosaccharide modification
FEBS Lett.
342
302-307
1994
Homo sapiens
Manually annotated by BRENDA team
Naim, H.Y.; Lentze, M.J.
Impact of O-glycosylation on the function of human intestinal lactase-phlorizin hydrolase. Characterization of glycoforms varying in enzyme activity and localization of O-glycoside addition
J. Biol. Chem.
267
25494-25504
1992
Homo sapiens
Manually annotated by BRENDA team
Mantei, N.; Villa, M.; Enzler, T.; Wacker, H.; Boll, W.; James, P.; Hunziker, W.; Semenza, G.
Complete primary structure of human and rabbit lactase-phlorizin hydrolase: implications for biosynthesis, membrane anchoring and evolution of the enzyme
EMBO J.
7
2705-2713
1988
Homo sapiens, Oryctolagus cuniculus
Manually annotated by BRENDA team
Naim, H.Y.; Sterchi, E.E.; Lentze, M.J.
Biosynthesis and maturation of lactase-phlorizin hydrolase in the human small intestinal epithelial
Biochem. J.
241
427-434
1987
Homo sapiens
Manually annotated by BRENDA team
Skovbjerg, H.; Danielsen, E.M.; Noren, O.; Sjstrm, H.
Evidence for biosynthesis of lactase-phlorizin hydrolase as a single-chain high-molecular weight precursor
Biochim. Biophys. Acta
798
247-251
1984
Homo sapiens
Manually annotated by BRENDA team
Skovbjerg, H.; Sjstrm, H.; Noren, O.
Purification and characterization of amphiphilic lactase/phlorizin hydrolase from human small intestine
Eur. J. Biochem.
114
653-661
1981
Homo sapiens
Manually annotated by BRENDA team
Skovbjerg, H.; Noren, O.; Sjstrm, H.; Danielsen, E.M.; Enevoldsen, B.S.
Further characterization of intestinal lactase/phlorizin hydrolase
Biochim. Biophys. Acta
707
89-97
1982
Homo sapiens, Sus scrofa
Manually annotated by BRENDA team
Jacob, R.; Peters, K.; Naim, H.Y.
Prosequence of human lactase-phlorizin hydrolase modulates the folding of mature enzyme
J. Biol. Chem.
277
8217-8225
2002
Homo sapiens
Manually annotated by BRENDA team
Mizuma, T.; Fuseda, N.; Hayashi, M.
Kinetic characterization of glycosidase activity from disaccharide conjugate to monosaccharide conjugate in Caco-2 cells
J. Pharm. Pharmacol.
57
661-664
2005
Homo sapiens
Manually annotated by BRENDA team
Beau, I.; Cotte-Laffitte, J.; Geniteau-Legendre, M.; Estes, M.K.; Servin, A.L.
An NSP4-dependant mechanism by which rotavirus impairs lactase enzymatic activity in brush border of human enterocyte-like Caco-2 cells
Cell. Microbiol.
9
2254-2266
2007
Homo sapiens
Manually annotated by BRENDA team
Hayashi, Y.; Okino, N.; Kakuta, Y.; Shikanai, T.; Tani, M.; Narimatsu, H.; Ito, M.
Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase
J. Biol. Chem.
282
30889-30900
2007
Danio rerio, Homo sapiens, Mus musculus, Rattus norvegicus, Tetraodontidae
Manually annotated by BRENDA team
Behrendt, M.; Keiser, M.; Hoch, M.; Naim, H.Y.
Impaired trafficking and subcellular localization of a mutant lactase associated with congenital lactase deficiency
Gastroenterology
136
2295-2303
2009
Homo sapiens
Manually annotated by BRENDA team
Cramm-Behrens, C.I.; Dienst, M.; Jacob, R.
Apical cargo traverses endosomal compartments on the passage to the cell surface
Traffic
9
2206-2220
2008
Homo sapiens
Manually annotated by BRENDA team
Behrendt, M.; Polaina, J.; Naim, H.Y.
Structural hierarchy of regulatory elements in the folding and transport of an intestinal multidomain protein
J. Biol. Chem.
285
4143-4152
2010
Homo sapiens
Manually annotated by BRENDA team
Koek, W.; van Meurs, J.; van der Eerden, B.; Rivadeneira, F.; Zillikens, M.; Hofman, A.; Obermayer-Pietsch, B.; Lips, P.; Pols, H.; Uitterlinden, A.; van Leeuwen, J.
The T-13910C polymorphism in the lactase phlorizin hydrolase gene is associated with differences in serum calcium levels and calcium intake
J. Bone Miner. Res.
25
1980-1987
2010
Homo sapiens
Manually annotated by BRENDA team
Diekmann, L.; Behrendt, M.; Amiri, M.; Naim, H.Y.
Structural determinants for transport of lactase phlorizin-hydrolase in the early secretory pathway as a multi-domain membrane glycoprotein
Biochim. Biophys. Acta Gen. Subj.
1861
3119-3128
2017
Homo sapiens (P09848)
Manually annotated by BRENDA team