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2-oxo-4-(trifluoromethyl)-2H-chromen-7-yl 3-O-(3-O-methyl-etab-D-xylopyranosyl)-beta-D-xylopyranoside + H2O
?
-
-
-
?
2-oxo-4-(trifluoromethyl)-2H-chromen-7-yl 3-O-beta-D-xylopyranosyl-beta-D-xylopyranoside + H2O
?
-
-
-
?
2-oxo-4-(trifluoromethyl)-2H-chromen-7-yl beta-D-xylopyranosyl-(1->3)-beta-D-xylopyranosyl-(1->3)-beta-D-xylopyranoside + H2O
beta-D-xylopyranosyl-(1->3)-beta-D-xylopyranosyl-(1->3)-beta-D-xylopyranose + 4-(trifluoromehtyl)umbelliferone
-
-
-
?
beta-1,3-xylan + H2O
beta-1,3-D-xylobiose + ?
beta-1,3-xylan + H2O
beta-1,3-xylobiose + beta-1,3-xylotriose + ?
beta-1,3-xylan + H2O
D-xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
disaccharides + trisaccharides + tetrasaccharides
-
-
disaccharides, trisaccharides and tetrasaccharides are the major products, whereas the monosaccharides, pentasaccharides and oligosaccharides with more than five xylose units are produces at small quantities
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
carboxymethylcellulose + H2O
?
-
-
-
-
?
glycol beta-1,3-xylan + H2O
?
glycol-beta-1,3-xylan + H2O
xylose + ?
-
-
-
-
?
laminarin + H2O
?
-
-
-
-
?
rhodymenan + H2O
beta-1,4-xylotriose + beta-1,4-linked xylooligosaccharides
xylan (birchwood) + H2O
xylotetraose + ?
-
-
xylotetraose is main product of xylan degradation
-
?
xylan (larchwood) + H2O
xylotetraose + ?
-
-
xylotetraose is main product of xylan degradation
-
?
xylan (oat spelts) + H2O
xylotetraose + ?
-
-
xylotetraose is main product of xylan degradation
-
?
xylopentaose + H2O
xylose + ?
-
-
-
-
?
xylopentaose + H2O
xylose + xylotetraose + xylobiose + xylotriose
xylotetraose + H2O
xylose + ?
-
-
-
-
?
xylotetraose + H2O
xylose + xylotriose + xylobiose
xylotriose + H2O
xylose + xylobiose
additional information
?
-
beta-1,3-xylan + H2O
?
hydrolysis and specific binding to
-
-
?
beta-1,3-xylan + H2O
?
hydrolysis and specific binding to
-
-
?
beta-1,3-xylan + H2O
?
-
-
-
?
beta-1,3-xylan + H2O
?
-
-
-
?
beta-1,3-xylan + H2O
?
-
-
-
?
beta-1,3-xylan + H2O
?
-
-
-
?
beta-1,3-xylan + H2O
?
-
enzyme production is induced by beta-1,3-xylan
-
-
?
beta-1,3-xylan + H2O
?
-
-
-
?
beta-1,3-xylan + H2O
beta-1,3-D-xylobiose + ?
-
main product, with D-xylose and beta-1,3-D-xylotriose as minor products
-
?
beta-1,3-xylan + H2O
beta-1,3-D-xylobiose + ?
-
main product, with D-xylose and beta-1,3-D-xylotriose as minor products
-
?
beta-1,3-xylan + H2O
beta-1,3-xylobiose + beta-1,3-xylotriose + ?
-
-
-
?
beta-1,3-xylan + H2O
beta-1,3-xylobiose + beta-1,3-xylotriose + ?
best substrate
-
-
?
beta-1,3-xylan + H2O
beta-1,3-xylobiose + beta-1,3-xylotriose + ?
-
-
-
?
beta-1,3-xylan + H2O
beta-1,3-xylobiose + beta-1,3-xylotriose + ?
best substrate
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
action pattern of type I occurs in the hydrolysis by enzyme form EF-1, EF-2 and EF-5: beta-1,3-xylobiose, beta-1,3-xylotriose, beta-1,3-xylotetraose and an unknown disaccharide are liberated. The action pattern of type II occurs during hydrolysis by enzyme form EF-4 and EF-6. In the initial stage the enzyme produces mainly beta-1,2-xylobiose, beta-1,3-xylotriose and beta-1,3-xylotetraose. As hydrolysis proceeds an isomeric xylotriose is detectable as well as xylose, beta-1,3-xylobiose, beta-1,3-xylotriose and beta-1,3-xylotetraose
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
action pattern of type I occurs in the hydrolysis by enzyme form EF-1, EF-2 and EF-5: beta-1,3-xylobiose, beta-1,3-xylotriose, beta-1,3-xylotetraose and an unknown disaccharide are liberated. The action pattern of type II occurs during hydrolysis by enzyme form EF-4 and EF-6. In the initial stage the enzyme produces mainly beta-1,2-xylobiose, beta-1,3-xylotriose and beta-1,3-xylotetraose. As hydrolysis proceeds an isomeric xylotriose is detectable as well as xylose, beta-1,3-xylobiose, beta-1,3-xylotriose and beta-1,3-xylotetraose
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
Bacillus sp. (in: Bacteria) No. C-59-2
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
?
beta-1,3-xylan + H2O
xylose + xylooligosaccharides
-
-
-
-
?
glycol beta-1,3-xylan + H2O
?
-
-
-
?
glycol beta-1,3-xylan + H2O
?
-
-
-
?
glycol beta-1,3-xylan + H2O
?
-
-
-
?
glycol beta-1,3-xylan + H2O
?
-
-
-
?
rhodymenan + H2O
beta-1,4-xylotriose + beta-1,4-linked xylooligosaccharides
-
-
beta-1,4-xylotriose and trace amounts of other beta-1,4-linked xylooligosaccharides
?
rhodymenan + H2O
beta-1,4-xylotriose + beta-1,4-linked xylooligosaccharides
-
-
beta-1,4-xylotriose and trace amounts of other beta-1,4-linked xylooligosaccharides
?
xylopentaose + H2O
xylose + xylotetraose + xylobiose + xylotriose
-
-
-
?
xylopentaose + H2O
xylose + xylotetraose + xylobiose + xylotriose
-
-
-
?
xylopentaose + H2O
xylose + xylotetraose + xylobiose + xylotriose
-
-
small amounts of xylobiose and xylotriose
?
xylotetraose + H2O
xylose + xylotriose + xylobiose
-
-
-
?
xylotetraose + H2O
xylose + xylotriose + xylobiose
-
-
-
?
xylotetraose + H2O
xylose + xylotriose + xylobiose
-
-
small amount of xylobiose
?
xylotriose + H2O
xylose + xylobiose
-
-
-
?
xylotriose + H2O
xylose + xylobiose
-
-
-
?
xylotriose + H2O
xylose + xylobiose
-
-
-
?
additional information
?
-
-
no hydrolysis of xylobiose and p-nitrophenyl-beta-D-xyloside
-
-
?
additional information
?
-
no substrate: beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan, beta-1,4-mannan
-
-
?
additional information
?
-
-
no substrate: beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan, beta-1,4-mannan
-
-
?
additional information
?
-
-
no hydrolysis of xylobiose and p-nitrophenyl-beta-D-xyloside
-
-
?
additional information
?
-
no substrate: beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan, beta-1,4-mannan
-
-
?
additional information
?
-
the enzyme does not hydrolyze beta-1,4-xylan, Avicel, carboxymethyl cellulose, laminarin, beta-1,4-mannan, starch, or various 4-nitrophenyl (pNP)-glycosides (pNP-alpha-glucosides, pNP-alpha-glucosides, pNP-alpha-galactosides, pNP-beta-galactosides, pNP-alpha-mannosides, pNP-beta-mannosides, pNP-alpha-xyloside, pNP-beta-xylosides, pNP-alpha-fucosides and pNP-beta-fucosides)
-
-
?
additional information
?
-
the enzyme does not hydrolyze beta-1,4-xylan, Avicel, carboxymethyl cellulose, laminarin, beta-1,4-mannan, starch, or various 4-nitrophenyl (pNP)-glycosides (pNP-alpha-glucosides, pNP-alpha-glucosides, pNP-alpha-galactosides, pNP-beta-galactosides, pNP-alpha-mannosides, pNP-beta-mannosides, pNP-alpha-xyloside, pNP-beta-xylosides, pNP-alpha-fucosides and pNP-beta-fucosides)
-
-
?
additional information
?
-
-
does not act on xylobiose
-
-
?
additional information
?
-
no activity on 4-methylumbelliferyl beta-D-xylopyranosyl-(1->4)-beta-D-xyloside
-
-
?
additional information
?
-
XYL4, an endo-type enzyme, contains two putative carbohydrate-binding modules, CBMs, belonging to family 31 in the C-terminal region. Repeating CBMs bind specifically to insoluble beta-1,3-xylan, but not to beta-1,4-xylan, Avicel, beta-1,4-mannan, curdlan, chitin or soluble glycol-beta-1,3-xylan, through hydrophobic interaction. Binding specificities of XYL4 and its mutants, overview
-
-
?
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(3R,4R)-4-hydroxy-3-[beta-D-xylopyranosyl-(1->3)-beta-D-xylopyranosyloxy]-piperidine
competitive
(3R,4R)-4-hydroxy-3-[beta-D-xylopyranosyloxy]-piperidine
competitive
2-mercaptoethanol
1 mM, 95% loss of activity
22,4-dinitrophenyl-beta-D-xylopyranosyl-(1->3)-beta-D-xylopyranosyl-(1->3)2-deoxy-2-fluoro-beta-D-xylopyranoside
-
Ca2+
1 mM, 7% loss of activity. 10 mM, 18% loss of activity
Cs+
5 mM, 4% loss of activity. 10 mM, 6% loss of activity
Mg2+
10 mM, 10% loss of activity
Pb(CH3COO)2
-
1 mM, strong
phenyl 1-thio-beta-D-xylopyranoside
-
phenyl 4-O-beta-D-xylopyranosyl-1-thio-beta-D-xylopyranoside
-
phenyl beta-D-xylopyranosyl-(1->3)-1-thio-beta-D-xylopyranoside
-
Sr2+
1 mM, activation to 108% of control. 10 mM, 4% loss of activity
additional information
dithiothreitol, and EDTA have no significant effects on enzyme activity
-
Ag+
-
1 mM, over 90% inhibition
Ag+
complete inhibition at 1 mM
Al3+
-
1 mM AlCl3, strong
Cd2+
-
-
Cd2+
1 mM, activation to 103% of control. 10 mM, 28% loss of activity
Co2+
1 mM, activation to 102% of control. 10 mM, 71% loss of activity
Co2+
10 mM, 32% loss of activity
Cu2+
-
1 mM CuCl2, strong
Cu2+
10 mM, 63% loss of activity
Cu2+
complete inhibition at 1 mM
Cu2+
-
1 mM, complete inhibition
Fe2+
1 mM, activation to 104% of control. 10 mM, 31% loss of activity
Fe2+
complete inhibition at 1 mM
Fe3+
-
1 mM FeCl3, strong
Fe3+
10 mM, 64% loss of activity
Fe3+
-
1 mM, complete inhibition
Hg2+
-
1 mM, strong
Hg2+
-
1 mM, strong inhibition
Hg2+
1 mM, 60% loss of activity. 10 mM, 74% loss of activity
Hg2+
-
1 mM, complete inhibition
K+
1 mM, 20% loss of activity. 10 mM, 19% loss of activity
K+
10 mM, 3% loss of activity
Mn2+
-
1 mM, strong inhibition
Mn2+
10 mM, 7% loss of activity
Mn2+
complete inhibition at 1 mM
N-bromosuccinimide
-
-
N-bromosuccinimide
-
1 mM, strong inhibition
N-bromosuccinimide
complete inhibition at 1 mM
N-bromosuccinimide
-
1 mM, complete inhibition
Ni2+
10 mM, 59% loss of activity
Ni2+
45-55% inhibition at 1 mM
Pb2+
-
1 mM, over 90% inhibition
Zn2+
-
1 mM, over 90% inhibition
Zn2+
1 mM, 9% loss of activity. 10 mM, 62% loss of activity
Zn2+
10 mM, 66% loss of activity
Zn2+
complete inhibition at 1 mM
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0 - 35
stable at 0-35°C for 1 h
20
the enzyme is stable at 20°C after incubating for 90 min at pH 7.0
55
-
pH 6.0, 15 min, complete loss of activity
80 - 85
the enzyme activity half-life is 23.9 h at 85°C and retains over 80% of initial activity at 80°C for 24 h
30
the enzyme loses more than 60% of its original activity at 30°C for 30 min
40
-
pH 7.5, 10 min, stable below
40
the enzyme loses more than 80% of its original activity at 40°C for 15 min
40
-
pH 6.0, 15 min, stable below
50
-
pH 7.5, 10 min, 70% loss of activity
50
-
pH 4.5, 1 h, enzyme forms EF-5 and EF-6, stable up to
50
-
92 min, 50% loss of activity
60
-
pH 7.5, 10 min, 99% loss of activity
60
-
pH 4.5, 1 h, enzyme forms EF-1, EF-2, EF-3 and EF-4 are stable, enzyme form EF-5 and EF-6 rapidly lose activity
60
-
20 min, 50% loss of activity
60
-
Xyl I, 3 h, 20% of initial activity
60
-
Xyl I, 3 h, presence of 0.5 M trehalose, 50% of initial activity
60
-
Xyl II, 3 h, complete inactivation
60
-
Xyl II, 3 h, presence of 0.5 M trehalose, 50% of initial activity
60
1 h, complete loss of activity
70
-
pH 4.5, 1 h, rapid decrease of activity of enzyme forms EF-1, EF-2, EF-3 and EF-4
70
-
8 min, 50% loss of activity
70
-
Xyl I, 3 h, no activity
70
-
Xyl I, 3 h, presence of 0.5 M trehalose, 36% of initial activity
70
-
Xyl II, 3 h, presence of 0.5 M trehalose, 50% of initial activity
additional information
the thermal stability of the Xyl512 improves significantly. The enzyme entirely loses its activity after incubating at 40°C for 60 min without NaCl, but it remains 80% of activity after being incubated for 90 min in the presence of 1.5 mol/l NaCl
additional information
-
the thermal stability of the Xyl512 improves significantly. The enzyme entirely loses its activity after incubating at 40°C for 60 min without NaCl, but it remains 80% of activity after being incubated for 90 min in the presence of 1.5 mol/l NaCl
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Aoki, T.; Araki, T.; Kitamikado, M.
Purification and characterization of an endo-beta-1,3-xylanase from Vibrio sp.
Nippon Suisan Gakkaishi
54
277-281
1988
Vibrio sp.
-
brenda
Chen, W.P.; Matsuo, M.; Yasui, T.
beta-1,3-Xylanase and beta-1,4-xylanase action on rhodymenan
Agric. Biol. Chem.
50
1195-1200
1986
Aspergillus terreus, Aspergillus terreus A-07
-
brenda
Chen, W.P.; Matsuo, M.; Yasui, T.
Purification and some properties of beta-1,3-xylanase from Aspergillus terreus A-07
Agric. Biol. Chem.
50
1183-1194
1986
Aspergillus terreus, Aspergillus terreus A-07
-
brenda
Horikoshi, K.; Atsukawa, Y.
Xylanase produced by alkalophilic Bacillus No. C-59-2
Agric. Biol. Chem.
37
2097-2103
1973
Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) No. C-59-2
-
brenda
Araki, T.; Aoki, T.; Kitamikado, M.
Isolation and identification of a beta-1,3-xylanase-producing bacterium
Nippon Suisan Gakkaishi
53
2077-2081
1987
Vibrio sp.
-
brenda
Araki, T.; Hashikawa, S.; Morishita, T.
Cloning, sequencing, and expression in Escherichia coli of the new gene encoding beta-1,3-xylanase from a marine bacterium, Vibrio sp. strain XY-214
Appl. Environ. Microbiol.
66
1741-1743
2000
Vibrio sp., Vibrio sp. XY-214
brenda
Yamaura, I.; Matsumoto, T.; Funatsu, M.; Mukai, E.
Purification and some properties of endo-1,3-beta-D-xylanase from Pseudomonas sp. PT-5
Agric. Biol. Chem.
54
921-926
1990
Pseudomonas sp., Pseudomonas sp. PT-5
brenda
Araki, T.; Inoue, N.; Morishita, T.
Purification and characterization of beta-1,3-xylanase from a marine bacterium Alcaligenes sp. XY-234
J. Gen. Appl. Microbiol.
44
269-274
1998
Alcaligenes sp., Alcaligenes sp. XY-234
brenda
Araki, T.; Tani, S.; Maeda, K.; Hashikawa, S.; Nakagawa, H.; Morishita, T.
Purification and characterization of beta-1,3-xylanase from a marine bacterium Vibrio sp. XY-214
Biosci. Biotechnol. Biochem.
63
2017-2019
1999
Vibrio sp., Vibrio sp. XY-214
brenda
Sa-Pereira, P.; Carvalho, A.S.L.; Costa-Ferreira, M.; Aires-Barros, M.R.
Thermostabilization of Bacillus subtilis CCMI 966 xylanases with trehalose. Study of deactivation kinetics
Enzyme Microb. Technol.
34
278-282
2004
Bacillus subtilis
-
brenda
Okazaki, F.; Tamaru, Y.; Hashikawa, S.; Li, Y.T.; Araki, T.
Novel carbohydrate-binding module of beta-1,3-xylanase from a marine bacterium, Alcaligenes sp. strain XY-234
J. Bacteriol.
184
2399-2403
2002
Alcaligenes sp. (Q8RS40), Alcaligenes sp., Alcaligenes sp. XY-234 (Q8RS40)
brenda
Sa-Pereira, P.; Costa-Ferreira, M.; Aires-Barros, M.R.
Enzymatic properties of a neutral endo-1,3(4)-beta-xylanase Xyl II from Bacillus subtilis
J. Biotechnol.
94
265-275
2002
Bacillus subtilis
brenda
Sakaguchi, K.; Kiyohara, M.; Watanabe, N.; Yamaguchi, K.; Ito, M.; Kawamura, T.; Tanaka, I.
Preparation and preliminary X-ray analysis of the catalytic module of beta-1,3-xylanase from the marine bacterium Vibrio sp. AX-4
Acta Crystallogr. Sect. D
60
1470-1472
2004
Vibrio sp.
brenda
Kiyohara, M.; Sakaguchi, K.; Yamaguchi, K.; Araki, T.; Nakamura, T.; Ito, M.
Molecular cloning and characterization of a novel beta-1,3-xylanase possessing two putative carbohydrate-binding modules from a marine bacterium Vibrio sp. strain AX-4
Biochem. J.
388
949-957
2005
Vibrio sp.
brenda
Hashimoto, H.; Tamai, Y.; Okazaki, F.; Tamaru, Y.; Shimizu, T.; Araki, T.; Sato, M.
The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan
FEBS Lett.
579
4324-4328
2005
Alcaligenes sp., Alcaligenes sp. XY-234
brenda
Kiyohara, M.; Hama, Y.; Yamaguchi, K.; Ito, M.
Structure of beta-1,3-xylooligosaccharides generated from Caulerpa racemosa var. laete-virens beta-1,3-xylan by the action of beta-1,3-xylanase
J. Biochem.
140
369-373
2006
Vibrio sp., Vibrio sp. AX4
brenda
Kiyohara, M.; Sakaguchi, K.; Yamaguchi, K.; Araki, T.; Ito, M.
Characterization and application of carbohydrate-binding modules of beta-1,3-xylanase XYL4
J. Biochem.
146
633-641
2009
Vibrio sp. AX-4 (D5MP61)
brenda
Okazaki, F.; Ogino, C.; Kondo, A.; Mikami, B.; Kurebayashi, Y.; Tsuruta, H.
Expression, crystallization and preliminary X-ray diffraction studies of thermostable beta-1,3-xylanase from Thermotoga neapolitana strain DSM 4359
Acta Crystallogr. Sect. F
67
779-781
2011
Thermotoga neapolitana, Thermotoga neapolitana DSM 4359
brenda
Umemoto, Y.; Shibata, T.; Araki, T.
D-Xylose isomerase from a marine bacterium, Vibrio sp. strain XY-214, and D-xylulose production from beta-1,3-xylan
Mar. Biotechnol.
14
10-20
2012
Vibrio sp. (Q9LCB9), Vibrio sp. XY-214 (Q9LCB9)
brenda
Okazaki, F.; Nakashima, N.; Ogino, C.; Tamaru, Y.; Kondo, A.
Biochemical characterization of a thermostable beta-1,3-xylanase from the hyperthermophilic eubacterium, Thermotoga neapolitana strain DSM 4359
Appl. Microbiol. Biotechnol.
97
6749-6757
2013
Thermotoga neapolitana (B9K760), Thermotoga neapolitana DSM 4359 (B9K760)
brenda
Kudou, M.; Okazaki, F.; Asai-Nakashima, N.; Ogino, C.; Kondo, A.
Expression of cold-adapted beta-1,3-xylanase as a fusion protein with a ProS2 tag and purification using immobilized metal affinity chromatography with a high concentration of ArgHCl
Biotechnol. Lett.
37
89-94
2015
Psychroflexus torquis (K4IH51)
brenda
Goddard-Borger, E.D.; Sakaguchi, K.; Reitinger, S.; Watanabe, N.; Ito, M.; Withers, S.G.
Mechanistic insights into the 1,3-xylanases: useful enzymes for manipulation of algal biomass
J. Am. Chem. Soc.
134
3895-3902
2012
Vibrio sp. (D5MP61)
brenda
Liang, W.; Fang, T.; Lin, H.; Liu, T.; Lu, W.; Tzou, W.; Tang, S.; Lin, F.; Liu, S.; Pan, C.
Cloning, expression, and characterization of Pseudomonas vesicularis MA103 beta-1,3-xylanase in Escherichia coli ClearColi BL21(DE3)
Fish. Sci.
81
1135-1143
2015
Brevundimonas vesicularis (A0A0A1C3U6), Brevundimonas vesicularis MA103 (A0A0A1C3U6)
-
brenda
Cai, Z.W.; Ge, H.H.; Yi, Z.W.; Zeng, R.Y.; Zhang, G.Y.
Characterization of a novel psychrophilic and halophilic beta-1,3-xylanase from deep-sea bacterium, Flammeovirga pacifica strain WPAGA1
Int. J. Biol. Macromol.
118
2176-2184
2018
Flammeovirga pacifica (A0A1S1YTI6), Flammeovirga pacifica, Flammeovirga pacifica WPAGA1 (A0A1S1YTI6)
brenda