Reference on EC 3.1.26.3 - ribonuclease III and Organism(s) Escherichia coli and UniProt Accession P0A7Y0
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AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Chen, S.M.; Takiff, H.E.; Barber, A.M.; Dubois, G.C.; Bardwell, J.C.A.; Court, D.L.
Expression and characterization of RNase III and Era proteins. Products of the rnc operon of Escherichia coli
J. Biol. Chem.
265
2888-2895
1990
Escherichia coli
Nicholson, A.W.; Niebling, K.R.; McOsker, P.L.; Robertson, H.D.
Accurate in vitro cleavage by RNase III of phosphorothioate-substituted RNA processing signals in bacteriophage T7 early mRNA
Nucleic Acids Res.
16
1577-1591
1988
Escherichia coli
Gross, G.; Dunn, J.J.
Structure of secondary cleavage sites of E. coli RNAaseIII in A3t RNA from bacteriophage T7
Nucleic Acids Res.
15
431-442
1987
Escherichia coli
Gurevitz, M.; Apirion, D.
The ribonuclease-III-processing site near the 5 end of an RNA precursor of bacteriophage T4 and its effect on termination
Eur. J. Biochem.
147
581-586
1985
Escherichia coli
Watson, N.; Apirion, D.
Molecular cloning of the gene for the RNA-processing enzyme RNase III of Escherichia coli
Proc. Natl. Acad. Sci. USA
82
849-853
1985
Escherichia coli
Szeberenyi, J.; Roy, M.K.; Vaidya, H.C.; Apirion, D.
7S RNA, containing 5S ribosomal RNA and the termination stem, is a specific substrate for the two RNA processing enzymes RNase III and RNase E
Biochemistry
23
2952-2957
1984
Escherichia coli
King, T.C.; Sirdeshmukh, R.; Schlessinger, D.
RNase III cleavage is obligate for maturation but not for function of Escherichia coli pre-23S rRNA
Proc. Natl. Acad. Sci. USA
81
185-188
1984
Escherichia coli
Panganiban, A.T.; Whiteley, H.R.
Bacillus subtilis RNAase III cleavage sites in phage SP82 early mRNA
Cell
33
907-913
1983
Bacillus subtilis, Escherichia coli
Barkay, T.; Goldfarb, A.
Processing of bacteriophage T4 primary transcripts with ribonuclease III
J. Mol. Biol.
162
299-315
1982
Escherichia coli
Dunn, J.J
Ribonuclease III
The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )
15
485-499
1982
Bos taurus, Escherichia coli, Homo sapiens, Mus musculus
-
Birenbaum, M.; Shen, V.; Nikolaev, N.; Schlessinger, D.
Site-specific processing of Escherichia coli preribosomal RNA and preribosomes by E. coli RNase III
Methods Enzymol.
59
824-837
1979
Escherichia coli
Shimura, Y.; Sakano, H.; Nagawa, F.
Specific ribonucleases involved in processing of tRNA precursors of Escherichia coli. Partial purification and some properties
Eur. J. Biochem.
86
267-281
1978
Escherichia coli
Dunn, J.J.
RNase III cleavage of single-stranded RNA. Effect of ionic strength on the fideltiy of cleavage
J. Biol. Chem.
251
3807-3814
1976
Escherichia coli
Paddock, G.V.; Fukada, K.; Abelson, J.; Robertson, H.D.
Cleavage of T4 species I ribonucleic acid by Escherichia coli ribonuclease III
Nucleic Acids Res.
3
1351-1371
1976
Escherichia coli
Crouch, R.J.
Ribonuclease 3 does not degrade deoxyribonucleic acid-ribonucleic acid hybrids
J. Biol. Chem.
249
1314-1316
1974
Escherichia coli
Robertson, H.D.; Webster, R.E.; Zinder, N.D.
Purification and properties of ribonuclease III from Escherichia coli
J. Biol. Chem.
243
82-91
1968
Escherichia coli
Zhang, J.R.; Deutscher, M.P.
Analysis of the upstream region of the Escherichia coli rnd gene encoding RNase D. Evidence for translational regulation of a putative tRNA processing enzyme
J. Biol. Chem.
264
18228-18233
1989
Escherichia coli
Srivastava, R.A.; Srivastava, N.; Apirion, D.
RNA processing enzymes RNase III, E and P in Escherichia coli are not ribosomal enzymes
Biochem. Int.
25
57-65
1991
Escherichia coli
Srivastava, R.A.; Srivastava, N.; Apirion, D.
Characterization of the RNA processing enzyme RNase III from wild type and overexpressing Escherichia coli cells in processing natural RNA substrates
Int. J. Biochem.
24
737-749
1992
Escherichia coli
Li, H.L.; Chelladurai, B.S.; Zhang, K.; Nicholson, A.W.
Ribonuclease III cleavage of a bacteriophage T7 processing signal. Divalent cation specificity, and specific anion effects
Nucleic Acids Res.
21
1919-1925
1993
Escherichia coli
Davidov, Y.; Rahat, A.; Flechner, I.; Pines, O.
Characterization of the rnc-97 mutation of RNAaseIII: a glycine to glutamate substitution increases the requirement for magnesium ions
J. Gen. Microbiol.
139
717-724
1993
Escherichia coli
Srivastava, R.A.; Srivastava, N.
The multifaceted roles of the RNA processing enzyme ribonuclease III
Indian J. Biochem. Biophys.
33
253-260
1996
Escherichia coli, Rattus norvegicus
Srivastava, N.; Srivastava, R.A.
Expression, purification and properties of recombinant E. coli ribonuclease III
Biochem. Mol. Biol. Int.
39
171-180
1996
Escherichia coli
Zhang, K.; Nicholson, A.W.
Regulation of ribonuclease III processing by double-helical sequence antideterminants
Proc. Natl. Acad. Sci. USA
94
13437-13441
1997
Escherichia coli
Conrad, C.; Rauhut, R.; Klug, G.
Different cleavage specificities of RNases III from Rhodobacter capsulatus and Escherichia coli
Nucleic Acids Res.
26
4446-4453
1998
Escherichia coli, Rhodobacter capsulatus
Binnie, U.; Wong, K.; McAteer, S.; Masters, M.
Absence of RNASE III alters the pathway by which RNAI, the antisense inhibitor of ColE1 replication, decays
Microbiology
145
3089-3100
1999
Escherichia coli
Sun, W.; Nicholson, A.W.
Mechanism of action of Escherichia coli ribonuclease III. Stringent chemical requirement for the glutamic acid 117 side chain and Mn2+ rescue of the Glu117Asp mutant
Biochemistry
40
5102-5110
2001
Escherichia coli
Sun, W.; Jun, E.; Nicholson, A.W.
Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain
Biochemistry
40
14976-14984
2001
Escherichia coli
Calin-Jageman, I.; Nicholson, A.W.
Mutational analysis of an RNA internal loop as a reactivity epitope for Escherichia coli ribonuclease III substrates
Biochemistry
42
5025-5034
2003
Escherichia coli
Conrad, C.; Evguenieva-Hackenberg, E.; Klug, G.
Both N-terminal catalytic and C-terminal RNA binding domain contribute to substrate specificity and cleavage site selection of RNase III
FEBS Lett.
509
53-58
2001
Escherichia coli, Rhodobacter capsulatus
Conrad, C.; Schmitt, J.G.; Evguenieva-Hackenberg, E.; Klug, G.
One functional subunit is sufficient for catalytic activity and substrate specificity of Escherichia coli endoribonuclease III artificial heterodimers
FEBS Lett.
518
93-96
2002
Escherichia coli
Amarasinghe, A.K.; Calin-Jageman, I.; Harmouch, A.; Sun, W.; Nicholson, A.W.
Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage
Methods Enzymol.
342
143-158
2001
Escherichia coli
Zamore, P.D.
Thirty-three years later, a glimpse at the ribonuclease III active site
Mol. Cell
8
1158-1160
2001
Aquifex aeolicus, Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens
Calin-Jageman, I.; Amarasinghe, A.K.; Nicholson, A.W.
Ethidium-dependent uncoupling of substrate binding and cleavage by Escherichia coli ribonuclease III
Nucleic Acids Res.
29
1915-1925
2001
Escherichia coli
Calin-Jageman, I.; Nicholson, A.W.
RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III
Nucleic Acids Res.
31
2381-2392
2003
Escherichia coli
Sun, W.; Li, G.; Nicholson, A.W.
Mutational analysis of the nuclease domain of Escherichia coli ribonuclease III. Identification of conserved acidic residues that are important for catalytic function in vitro
Biochemistry
43
13054-13062
2004
Escherichia coli
Zhang, H.; Kolb, F.A.; Jaskiewicz, L.; Westhof, E.; Filipowicz, W.
Single processing center models for human Dicer and bacterial RNase III
Cell
118
57-68
2004
Escherichia coli, Homo sapiens
Sun, W.; Pertzev, A.; Nicholson, A.W.
Catalytic mechanism of Escherichia coli ribonuclease III: kinetic and inhibitor evidence for the involvement of two magnesium ions in RNA phosphodiester hydrolysis
Nucleic Acids Res.
33
807-815
2005
Escherichia coli
Ji, X.
Structural basis for non-catalytic and catalytic activities of ribonuclease III
Acta Crystallogr. Sect. D
62
933-940
2006
Thermotoga maritima, Aquifex aeolicus (O67082), Escherichia coli (P0A7Y0), Saccharomyces cerevisiae (Q02555), Homo sapiens (Q9NRR4), Homo sapiens (Q9UPY3)
MacRae, I.J.; Doudna, J.A.
Ribonuclease revisited: structural insights into ribonuclease III family enzymes
Curr. Opin. Struct. Biol.
17
138-145
2007
Aquifex aeolicus, Saccharomyces cerevisiae, Escherichia coli, Giardia intestinalis, Homo sapiens
Kim, K.S.; Manasherob, R.; Cohen, S.N.
YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity
Genes Dev.
22
3497-3508
2008
Escherichia coli
Meng, W.; Nicholson, R.H.; Nathania, L.; Pertzev, A.V.; Nicholson, A.W.
New approaches to understanding double-stranded RNA processing by ribonuclease III purification and assays of homodimeric and heterodimeric forms of RNase III from bacterial extremophiles and mesophiles
Methods Enzymol.
447
119-129
2008
Escherichia coli, Aquifex aeolicus (O67082), Aquifex aeolicus, Thermotoga maritima (Q9X0I6), Thermotoga maritima
Resch, A.; Afonyushkin, T.; Lombo, T.B.; McDowall, K.J.; Blaesi, U.; Kaberdin, V.R.
Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5-leader
RNA
14
454-459
2008
Escherichia coli
Xiao, J.; Feehery, C.E.; Tzertzinis, G.; Maina, C.V.
E. coli RNase III(E38A) generates discrete-sized products from long dsRNA
RNA
15
984-991
2009
Escherichia coli
Kim, K.; Sim, S.H.; Jeon, C.O.; Lee, Y.; Lee, K.
Base substitutions at scissile bond sites are sufficient to alter RNA-binding and cleavage activity of RNase III
FEMS Microbiol. Lett.
315
30-37
2011
Escherichia coli
Opdyke, J.A.; Fozo, E.M.; Hemm, M.R.; Storz, G.
RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA
J. Mol. Biol.
406
29-43
2011
Escherichia coli
Lim, B.; Ahn, S.; Sim, M.; Lee, K.
RNase III controls mltD mRNA degradation in Escherichia coli
Curr. Microbiol.
68
518-523
2014
Escherichia coli, Escherichia coli HT115
Lim, B.; Sim, S.H.; Sim, M.; Kim, K.; Jeon, C.O.; Lee, Y.; Ha, N.C.; Lee, K.
RNase III controls the degradation of corA mRNA in Escherichia coli
J. Bacteriol.
194
2214-2220
2012
Escherichia coli, Escherichia coli MG1655
Johanson, T.M.; Lew, A.M.; Chong, M.M.
MicroRNA-independent roles of the RNase III enzymes Drosha and Dicer
Open Biology
3
130144
2013
Arabidopsis thaliana, Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus
Sim, M.; Lim, B.; Sim, S.H.; Kim, D.; Jung, E.; Lee, Y.; Lee, K.
Two tandem RNase III cleavage sites determine betT mRNA stability in response to osmotic stress in Escherichia coli
PLoS ONE
9
e100520
2014
Escherichia coli, Escherichia coli MG1655rnc
Kavalchuk, K.; Madhusudan, S.; Schnetz, K.
RNase III initiates rapid degradation of proU mRNA upon hypo-osmotic stress in Escherichia coli
RNA Biol.
9
98-109
2012
Escherichia coli
Malagon, F.
RNase III is required for localization to the nucleoid of the 5 pre-rRNA leader and for optimal induction of rRNA synthesis in E. coli
RNA
19
1200-1207
2013
Escherichia coli (B1XB41)
Nicholson, A.W.
Ribonuclease III mechanisms of double-stranded RNA cleavage
Wiley Interdiscip. Rev. RNA
5
31-48
2013
Saccharomyces cerevisiae, Escherichia coli, Homo sapiens, Schizosaccharomyces pombe, Giardia intestinalis (A8BQJ3), Aquifex aeolicus (O67082), Mycobacterium tuberculosis (P9WH03), Thermotoga maritima (Q9X0I6), Mycobacterium tuberculosis H37Rv (P9WH03)
Carzaniga, T.; Deho, G.; Briani, F.
RNase III-independent autogenous regulation of Escherichia coli polynucleotide phosphorylase via translational repression
J. Bacteriol.
197
1931-1938
2015
Escherichia coli (P0A7Y0)
Lim, B.; Sim, M.; Lee, H.; Hyun, S.; Lee, Y.; Hahn, Y.; Shin, E.; Lee, K.
Regulation of Escherichia coli RNase III activity
J. Microbiol.
53
487-494
2015
Aquifex aeolicus (O67082), Escherichia coli (P0A7Y0), Escherichia coli
Gordon, G.; Cameron, J.; Pfleger, B.
RNA sequencing identifies new RNase III cleavage sites in Escherichia coli and reveals increased regulation of mRNA
mBio
8
e00128-17
2017
Escherichia coli (P0A7Y0), Escherichia coli MG1693 (P0A7Y0)
Altuvia, Y.; Bar, A.; Reiss, N.; Karavani, E.; Argaman, L.; Margalit, H.
In vivo cleavage rules and target repertoire of RNase III in Escherichia coli
Nucleic Acids Res.
46
10380-10394
2018
Escherichia coli (P0A7Y0), Escherichia coli MG1655 (P0A7Y0)
Paudyal, S.; Alfonso-Prieto, M.; Carnevale, V.; Redhu, S.; Klein, M.; Nicholson, A.
Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB
Proteins
83
459-472
2015
Escherichia coli (P0A7Y0), Escherichia coli
