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Reference on EC 2.7.7.72 - CCA tRNA nucleotidyltransferase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Schofield, P.; Williams, K.R.
Purification and some properties of Escherichia coli tRNA nucleotidyltransferase
J. Biol. Chem.
252
5584-5588
1977
Escherichia coli, Escherichia coli B / ATCC 11303
Manually annotated by BRENDA team
Shi, P.Y.; Maizels, N.; Weiner, A.M.
CCA addition by tRNA nucleotidyltransferase: polymerization without translocation?
EMBO J.
17
3197-3206
1998
Escherichia coli, Saccharolobus shibatae
Manually annotated by BRENDA team
Augustin, M.A.; Reichert, A.S.; Betat, H.; Huber, R.; Morl, M.; Steegborn, C.
Crystal structure of the human CCA-adding enzyme: insights into template-independent polymerization
J. Mol. Biol.
328
985-994
2003
Homo sapiens (Q96Q11), Homo sapiens
Manually annotated by BRENDA team
Yakunin, A.F.; Proudfoot, M.; Kuznetsova, E.; Savchenko, A.; Brown, G.; Arrowsmith, C.H.; Edwards, A.M.
The HD domain of the E. coli tRNA nucleotidyltransferase has 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase activities
J. Biol. Chem.
279
36819-36827
2004
Escherichia coli (P06961), Escherichia coli
Manually annotated by BRENDA team
Cho, H.D.; Verlinde, C.L.; Weiner, A.M.
Archaeal CCA-adding enzymes: central role of a highly conserved beta-turn motif in RNA polymerization without translocation
J. Biol. Chem.
280
9555-9566
2005
Saccharolobus shibatae (P77978), Saccharolobus shibatae
Manually annotated by BRENDA team
Xiong, Y.; Steitz, T.A.
Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template
Nature
430
640-645
2004
Archaeoglobus fulgidus (O28126), Archaeoglobus fulgidus
Manually annotated by BRENDA team
Cho, H.D.; Chen, Y.; Varani, G.; Weiner, A.M.
A model for C74 addition by CCA-adding enzymes: C74 addition, like C75 and A76 addition, does not involve tRNA translocation
J. Biol. Chem.
281
9801-9811
2006
Archaeoglobus fulgidus
Manually annotated by BRENDA team
Bralley, P.; Cozad, M.; Jones, G.
Geobacter sulfurreducens contains separate C- and A-adding tRNA nucleotidyltransferases and a poly(A) polymerase
J. Bacteriol.
91
109-114
2009
Geobacter sulfurreducens, Alkalihalobacillus clausii (Q5WGA1), Thermus thermophilus (Q72K91)
Manually annotated by BRENDA team
Campos-Guillen, J.; Arvizu-Gomez, J.L.; Jones, G.H.; Olmedo-Alvarez, G.
Characterization of tRNA(Cys) processing in a conditional Bacillus subtilis CCase mutant reveals the participation of RNase R in its quality control
Microbiology
156
2102-2111
2010
Bacillus subtilis
Manually annotated by BRENDA team
Hoffmeier, A.; Betat, H.; Bluschke, A.; Gunther, R.; Junghanns, S.; Hofmann, H.J.; Morl, M.
Unusual evolution of a catalytic core element in CCA-adding enzymes
Nucleic Acids Res.
38
4436-4447
2010
Geobacillus stearothermophilus, Escherichia coli, Homo sapiens (Q96Q11)
Manually annotated by BRENDA team
Pan, B.; Xiong, Y.; Steitz, T.A.
How the CCA-adding enzyme selects adenine over cytosine at position 76 of tRNA
Science
330
937-940
2010
Archaeoglobus fulgidus (O28126)
Manually annotated by BRENDA team
Li, F.; Wang, J.; Steitz, T.A.
Sulfolobus shibatae CCA-adding enzyme forms a tetramer upon binding two tRNA molecules: A scrunching-shuttling model of CCA specificity
J. Mol. Biol.
304
483-492
2000
Saccharolobus shibatae (P77978), Saccharolobus shibatae
Manually annotated by BRENDA team
Yue, D.; Maizels, N.; Weiner, A.M.
CCA-adding enzymes and poly(A) polymerases are all members of the same nucleotidyltransferase superfamily: characterization of the CCA-adding enzyme from the archaeal hyperthermophile Sulfolobus shibatae
RNA
2
895-908
1996
Saccharolobus shibatae (P77978), Saccharolobus shibatae
Manually annotated by BRENDA team
Mrl, M.; Betat, H.; Rammelt, C.
TRNA nucleotidyltransferases: ancient catalysts with an unusual mechanism of polymerization
Cell. Mol. Life Sci.
67
1447-1463
2010
Archaeoglobus fulgidus, Geobacillus stearothermophilus, Escherichia coli, Thermus thermophilus, Homo sapiens, Saccharolobus shibatae, Thermotoga maritima
Manually annotated by BRENDA team
Okabe, M.; Tomita, K.; Ishitani, R.; Ishii, R.; Takeuchi, N.; Arisaka, F.; Nureki, O.; Yokoyama, S.
Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure
EMBO J.
22
5918-5927
2003
Archaeoglobus fulgidus (O28126), Archaeoglobus fulgidus
Manually annotated by BRENDA team
Toh, Y.; Numata, T.; Watanabem K.; Takeshita, D.; Nureki, O.; Tomita, K.
Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme
EMBO J.
27
1944-1952
2008
Archaeoglobus fulgidus (O28126)
Manually annotated by BRENDA team
Vrtler, S.; Mrl, M.
tRNA-nucleotidyltransferases: Highly unusual RNA polymerases with vital functions
FEBS Lett.
584
297-302
2010
Aquifex aeolicus, Archaea, Halalkalibacterium halodurans, Deinococcus radiodurans, Escherichia coli, Thermus thermophilus, Homo sapiens, Caldanaerobacter subterraneus subsp. tengcongensis
Manually annotated by BRENDA team
Igarashi, T.; Liu, C.; Morinaga, H.; Kim, S.; Hou, Y.
Pyrophosphorolysis of CCA addition: implication for fidelity
J. Mol. Biol.
414
28-43
2011
Archaeoglobus fulgidus, Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Seth, M.; Thurlow, D.L.; Hou, Y.M.
Poly(C) synthesis by class I and class II CCA-adding enzymes
Biochemistry
41
4521-4532
2002
Saccharolobus shibatae (P77978), Saccharolobus shibatae
Manually annotated by BRENDA team
Yue, D.; Weiner, A.M.; Maizels, N.
The CCA-adding enzyme has a single active site
J. Biol. Chem.
273
29693-29700
1998
Saccharolobus shibatae (P77978), Saccharolobus shibatae
Manually annotated by BRENDA team
Gruz, P.; Shimizu, M.; Pisani, F.M.; De Felice, M.; Kanke, Y.; Nohmi, T.
Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus
Nucleic Acids Res.
31
4024-4030
2003
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Manually annotated by BRENDA team
Cho, H.D.; Sood, V.D.; Baker, D.; Weiner, A.M.
On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes
RNA
14
1284-1289
2008
Archaeoglobus fulgidus (O28126), Archaeoglobus fulgidus
Manually annotated by BRENDA team
Leibovitch, M.; Bublak, D.; Hanic-Joyce, P.J.; Tillmann, B.; Flinner, N.; Amsel, D.; Scharf, K.D.; Mirus, O.; Joyce, P.B.; Schleiff, E.
The folding capacity of the mature domain of the dual-targeted plant tRNA nucleotidyltransferase influences organelle selection
Biochem. J.
453
401-412
2013
Arabidopsis thaliana
Manually annotated by BRENDA team
Goring, M.E.; Leibovitch, M.; Gea-Mallorqui, E.; Karls, S.; Richard, F.; Hanic-Joyce, P.J.; Joyce, P.B.
The ability of an arginine to tryptophan substitution in Saccharomyces cerevisiae tRNA nucleotidyltransferase to alleviate a temperature-sensitive phenotype suggests a role for motif C in active site organization
Biochim. Biophys. Acta
1834
2097-2106
2013
no activity in Saccharomyces cerevisiae
Manually annotated by BRENDA team
Franz, P.; Betat, H.; Moerl, M.
Genotyping bacterial and fungal pathogens using sequence variation in the gene for the CCA-adding enzyme
BMC Microbiol.
16
47
2016
Aspergillus sp., Vibrio sp.
Manually annotated by BRENDA team
Kuhn, C.D.; Wilusz, J.E.; Zheng, Y.; Beal, P.A.; Joshua-Tor, L.
On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme
Cell
160
644-658
2015
Archaeoglobus fulgidus (O28126)
Manually annotated by BRENDA team
Sasarman, F.; Thiffault, I.; Weraarpachai, W.; Salomon, S.; Maftei, C.; Gauthier, J.; Ellazam, B.; Webb, N.; Antonicka, H.; Janer, A.; Brunel-Guitton, C.; Elpeleg, O.; Mitchell, G.; Shoubridge, E.A.
The 3 addition of CCA to mitochondrial tRNASer(AGY) is specifically impaired in patients with mutations in the tRNA nucleotidyl transferase TRNT1
Hum. Mol. Genet.
24
2841-2847
2015
Homo sapiens (Q96Q11), Homo sapiens
Manually annotated by BRENDA team
Liwak-Muir, U.; Mamady, H.; Naas, T.; Wylie, Q.; McBride, S.; Lines, M.; Michaud, J.; Baird, S.D.; Chakraborty, P.K.; Holcik, M.
Impaired activity of CCA-adding enzyme TRNT1 impacts OXPHOS complexes and cellular respiration in SIFD patient-derived fibroblasts
Orphanet J. Rare Dis.
11
79
2016
Homo sapiens (Q96Q11)
Manually annotated by BRENDA team
Ernst, F.G.; Rickert, C.; Bluschke, A.; Betat, H.; Steinhoff, H.J.; Moerl, M.
Domain movements during CCA-addition: a new function for motif C in the catalytic core of the human tRNA nucleotidyltransferases
RNA Biol.
12
435-446
2015
Homo sapiens (Q96Q11)
Manually annotated by BRENDA team
Yamashita, S.; Takeshita, D.; Tomita, K.
Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure
22
315-325
2014
Aquifex aeolicus (O67911), Aquifex aeolicus
Manually annotated by BRENDA team
Yamashita, S.; Tomita, K.
Mechanism of 3-matured tRNA discrimination from 3-immature tRNA by class-II CCA-adding enzyme
Structure
24
918-925
2016
Thermotoga maritima (Q9WZH4), Thermotoga maritima, Thermotoga maritima DSM 3109 (Q9WZH4)
Manually annotated by BRENDA team
Poehler, M.T.; Roach, T.M.; Betat, H.; Jackman, J.E.; Moerl, M.
A temporal order in 5'-and 3'-processing of eukaryotic tRNAHis
Int. J. Mol. Sci.
20
1384
2019
Saccharomyces cerevisiae (P21269), Saccharomyces cerevisiae ATCC 204508 (P21269)
Manually annotated by BRENDA team
Erber, L.; Hoffmann, A.; Fallmann, J.; Hagedorn, M.; Hammann, C.; Stadler, P.; Betat, H.; Prohaska, S.; Moerl, M.
Unusual occurrence of two bona-fide cca-adding enzymes in Dictyostelium discoideum
Int. J. Mol. Sci.
21
1-16
2020
Dictyostelium discoideum (Q54BQ2), Dictyostelium discoideum (Q55BE1)
Manually annotated by BRENDA team
Hennig, O.; Philipp, S.; Bonin, S.; Rollet, K.; Kolberg, T.; Juehling, T.; Betat, H.; Sauter, C.; Moerl, M.
Adaptation of the Romanomermis culicivorax CCA-adding enzyme to miniaturized armless tRNA substrates
Int. j. Mol. Sci.
21
9047
2020
Romanomermis culicivorax, Homo sapiens (Q96Q11), Homo sapiens
Manually annotated by BRENDA team
Shikha, S.; Schneider, A.
The single CCA-adding enzyme of T. brucei has distinct functions in the cytosol and in mitochondria
J. Biol. Chem.
295
6138-6150
2020
Trypanosoma brucei brucei, Trypanosoma brucei brucei 927/4 GUTat10.1
Manually annotated by BRENDA team
Czech, A.
Deep sequencing of tRNAs 3-termini sheds light on CCA-tail integrity and maturation
RNA
26
199-208
2020
Escherichia coli, Escherichia coli CA244
Manually annotated by BRENDA team
Ernst, F.G.M.; Erber, L.; Sammler, J.; Juehling, F.; Betat, H.; Moerl, M.
Cold adaptation of tRNA nucleotidyltransferases A tradeoff in activity, stability and fidelity
RNA Biol.
15
144-155
2018
Planococcus halocryophilus (A0A1C7DQ98), Exiguobacterium sibiricum (B1YHR1), Bacillus subtilis (P42977), Geobacillus stearothermophilus (Q7SIB1), Bacillus subtilis 168 (P42977), Exiguobacterium sibiricum DSM 17290 (B1YHR1)
Manually annotated by BRENDA team
Pawar, K.; Shigematsu, M.; Loher, P.; Honda, S.; Rigoutsos, I.; Kirino, Y.
Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme
RNA Biol.
16
1817-1825
2019
Homo sapiens
Manually annotated by BRENDA team