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Information on EC 2.7.2.4 - aspartate kinase and Organism(s) Arabidopsis thaliana and UniProt Accession Q9LYU8

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IUBMB Comments
The enzyme from Escherichia coli is a multifunctional protein, which also catalyses the reaction of EC 1.1.1.3 homoserine dehydrogenase. This is also the case for two of the four isoenzymes in Arabidopsis thaliana. The equilibrium constant strongly favours the reaction from right to left, i.e. the non-physiological direction of reaction.
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Arabidopsis thaliana
UNIPROT: Q9LYU8
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Word Map
The taxonomic range for the selected organisms is: Arabidopsis thaliana
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
aspartokinase, aspartate kinase, thra1, aspartokinase ii, aspartokinase iii, aspartokinase i, akiii, thra2, ak iii, ak ii, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Asp kinase-homoserine dehydrogenase
-
aspartate kinase
-
aspartate kinase 1
-
aspartokinase
UniProt
Asp kinase-homoserine dehydrogenase
-
aspartate kinase
aspartate kinase (phosphorylating)
-
-
-
-
aspartate kinase 2
-
-
aspartate kinase 3
-
aspartate kinase I
-
also acts as homoserine dehydrogenase (EC 1.1.1.3)
aspartate kinase II
-
also acts as homoserine dehydrogenase (EC 1.1.1.3)
aspartic kinase
-
-
-
-
aspartokinase
-
-
-
-
aspartokinase 2
UniProt
aspartokinase 3
UniProt
aspartokinase-homoserine dehydrogenase
-
-
beta-aspartokinase
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
phospho group transfer
-
phospho group transfer
SYSTEMATIC NAME
IUBMB Comments
ATP:L-aspartate 4-phosphotransferase
The enzyme from Escherichia coli is a multifunctional protein, which also catalyses the reaction of EC 1.1.1.3 homoserine dehydrogenase. This is also the case for two of the four isoenzymes in Arabidopsis thaliana. The equilibrium constant strongly favours the reaction from right to left, i.e. the non-physiological direction of reaction.
CAS REGISTRY NUMBER
COMMENTARY hide
9012-50-4
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + L-aspartate
ADP + 4-phospho-L-aspartate
show the reaction diagram
ATP + L-aspartate
ADP + 4-phospho-L-aspartate
show the reaction diagram
ATP + L-aspartate
ADP + phospho-L-aspartate
show the reaction diagram
-
-
-
-
?
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
ATP + L-aspartate
ADP + 4-phospho-L-aspartate
show the reaction diagram
ATP + L-aspartate
ADP + 4-phospho-L-aspartate
show the reaction diagram
ATP + L-aspartate
ADP + phospho-L-aspartate
show the reaction diagram
-
-
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
L-lysine
S-adenosyl-L-methionine
AK1 is inhibited in a synergistic manner by lysine and S-adenosyl-L-methionine, in the presence of S-adenosyl-L-methionine, the apparent affinity of AK1 for lysine increases considerably for lysine inhibition similar to those of AK2 and AK3
L-alanine
-
no significant effect on AK activity at 5 and 20 mM
L-isoleucine
-
no significant effect on AK activity at 5 and 20 mM
L-leucine
-
allosteric effector
L-lysine
L-threonine
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
L-alanine
L-cysteine
L-isoleucine
L-leucine
-
4fold activation at 2.5 mM
L-serine
L-valine
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2.037
aspartate
30°C, 50 mM HEPES, pH 8.0, 150 mM KCl, 20 mM MgCl2 with a coupled assay using aspartate semialdehyde dehydrogenase from Arabidopsis thaliana
1.7
ATP
1.095 - 1.94
aspartate
0.42 - 12.9
ATP
1.095 - 26.4
L-aspartate
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
23.4
ATP
8.4 - 14.5
ATP
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.1
L-leucine
-
-
0.049 - 0.091
L-threonine
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.0013
-
mutant S2207A
0.0064
-
wild-type
0.0068
-
mutant RL4
0.0107
-
complemented mutant A2207A/pM1-1
0.0268
-
wild type X-2180-1A
18.87
reverse reaction
5.4
forward reaction
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6.13
theoretical pI
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
the contents of Asp, Lys, and Met in ak1-1, ak2-1, ak3-1, ak-hsdh1-1, ak-hsdh2-1, and ak-hsdh2-2 are significantly higher than those in the wild-type. Increases of Asp, Lys, and Met in ak-hsdh2 are also observed in mutants ak1-1, ak2-1, ak3-1, and ak-hsdh1-1. The Thr increase in ak-hsdh2 is observed in ak-hsdh1-1 but not in ak1-1, ak2-1, or ak3-1. Mutant plant phenotypes, overview
physiological function
biosynthesis of aspartate-derived amino acids lysine, methionine, threonine, and isoleucine involves monofunctional Asp kinases and dual-functional Asp kinase-homoserine dehydrogenases (AK-HSDHs). Isozymes AK2 and AK-HSDH1 are the major contributors to overall AK and HSDH activities, respectively
malfunction
physiological function
biosynthesis of aspartate-derived amino acids lysine, methionine, threonine, and isoleucine involves monofunctional Asp kinases and dual-functional Asp kinase-homoserine dehydrogenases (AK-HSDHs). Isozymes AK2 and AK-HSDH1 are the major contributors to overall AK and HSDH activities, respectively
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
AK1_ARATH
569
0
62298
Swiss-Prot
Chloroplast (Reliability: 5)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
55900
320000
gel filtration, in presence of 5.0 mM L-threonine
470000
53200
55100
93000
? * 93000, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oligomer
? * 93000, SDS-PAGE
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
I441A
-
site-directed mutagenesis
I552A
-
site-directed mutagenesis
Q443A
-
site-directed mutagenesis
Q524A
-
site-directed mutagenesis
S2207A
-
phenotype Thr- Met- Ura-
S2207A/pM1-1
-
mutant S2207A complemented with plasmid pM1-1, phenotype Thr+ Met+ Ura+
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
20
in 24 h, AK1 retains all its activity
20
AK3 is highly unstable when stored at room temperature, losing 95% of its activity in 24 h. During this period of time, AK1 and AK2 retained all their activity
additional information
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
pure protein , quickly frozen in N2 can be stored at -80°C for several months without any loss of activity
-
pure protein, quickly frozen in N2 can be stored at -80°C for several months without any loss of activity
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-80°C, HEPES buffer, pH 7.5, 1 mM Lys, 10% (v/v) glycerol, several month, without any loss of activity
-80°C, HEPES buffer, pH 7.5, 1 mm Lys, 10% (v/v) glycerol, several months
-80°C, HEPES buffer, pH 7.5, 1 mM Lys, 10% (v/v) glycerol, several month, without any loss of activity
-80°C, HEPES buffer, pH 7.5, 1 mm Lys, 10% (v/v) glycerol, several months
-80°C, stored frozen without noticeable loss of enzyme activity
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
on anion exchange column and by gel filtration
weak anion exchange chromatography, affinity chromatogrphy for AK1
native and recombinant enzyme
on anion exchange column and by gel filtration
weak anion exchange chromatography, gel filtration
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
ligated into pET 23d(+) vector and Escherichia coli strain DH10B for cloning, expression in Escherichia coli BL21 (DE3) pLysS codon+
ligated into pET 23d(+) vector, expressed in Escherichia coli BL21 codon (+)
by functional complementation of a Saccharomyces cerevisiae strain mutated in its homoserine dehydrogenase gene (hom6), expression in Escherichia coli, two of the three isolated clones are also able to complement a mutant yeast aspartate kinase gene (hom3), expression of the AK-HSDH gene in Arabidopsis thaliana (meristematic cells, leaves and stamens)
-
cDNA located on chromosome 4, cloned in Escherichia coli DH5alpha, overproduced in Escherichia coli BL21pLysS
expression in Escherichia coli
-
ligated into pET 23d(+) vector and Escherichia coli strain DH10B for cloning, expression in Escherichia coli BL21 (DE3) pLysS codon+
ligated into pET 23d(+) vector, expressed in Escherichia coli BL21 codon (+)
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
transcription of aspartate kinase genes is down-regulated under energy-depleted conditions formed by darkness and low sugar levels.The sugar-sensitive enhancer sequence of the AK/HSD1 promoter interacts with DPBF4 (Atb-ZIP12/EEL1) and ABI5 (AtbZIP39/DPBF1) in yeast one-hybrid system and in planta
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
agriculture
enzyme does not exist in animals, good target for conception of new pesticides controlling weeds, fungi and bacteria
additional information
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Heremans, B.; Jacobs, M.
A mutant of Arabidopsis thaliana (L.) Heynh. with modified control of aspartate kinase by threonine
Biochem. Genet.
35
139-153
1997
Arabidopsis thaliana
Manually annotated by BRENDA team
Paris, S.; Wessel, P.M.; Dumas, R.
Overproduction, purification, and characterization of recombinant bifunctional threonine-sensitive aspartate kinase-homoserine dehydrogenase from Arabidopsis thaliana
Protein Expr. Purif.
24
105-110
2002
Arabidopsis thaliana, Arabidopsis thaliana (O81852)
Manually annotated by BRENDA team
Paris, S.; Viemon, C.; Curien, G.; Dumas, R.
Mechanism of control of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase by threonine
J. Biol. Chem.
278
5361-5366
2003
Arabidopsis thaliana
Manually annotated by BRENDA team
Rognes, S.E.; Dewaele, E.; Aas, S.F.; Jacobs, M.; Frankard, V.
Transcriptional and biochemical regulation of a novel Arabidopsis thaliana bifunctional aspartate kinase-homoserine dehydrogenase gene isolated by functional complementation of a yeast hom6 mutant
Plant Mol. Biol.
51
281-294
2003
Arabidopsis thaliana
Manually annotated by BRENDA team
Curien, G.; Ravanel, S.; Robert, M.; Dumas, R.
Identification of six novel allosteric effectors of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase isoforms. Physiological context sets the specificity
J. Biol. Chem.
280
41178-41183
2005
Arabidopsis thaliana
Manually annotated by BRENDA team
Curien, G.; Laurencin, M.; Robert-Genthon, M.; Dumas, R.
Allosteric monofunctional aspartate kinases from Arabidopsis
FEBS J.
274
164-176
2007
Arabidopsis thaliana, Arabidopsis thaliana (O23653), Arabidopsis thaliana (Q9LYU8), Arabidopsis thaliana (Q9S702)
Manually annotated by BRENDA team
Ufaz, S.; Shukla, V.; Soloveichik, Y.; Golan, Y.; Breuer, F.; Koncz, Z.; Galili, G.; Koncz, C.; Zilberstein, A.
Transcriptional control of aspartate kinase expression during darkness and sugar depletion in Arabidopsis: involvement of bZIP transcription factors
Planta
233
1025-1040
2011
Arabidopsis thaliana
Manually annotated by BRENDA team
Clark, T.J.; Lu, Y.
Analysis of loss-of-function mutants in aspartate kinase and homoserine dehydrogenase genes points to complexity in the regulation of aspartate-derived amino acid contents
Plant Physiol.
168
1512-1526
2015
Arabidopsis thaliana (O23653), Arabidopsis thaliana (O81852), Arabidopsis thaliana (Q9LYU8), Arabidopsis thaliana (Q9S702), Arabidopsis thaliana (Q9SA18)
Manually annotated by BRENDA team