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Information on EC 2.1.1.41 - sterol 24-C-methyltransferase and Organism(s) Saccharomyces cerevisiae and UniProt Accession P25087

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EC Tree
     2 Transferases
         2.1 Transferring one-carbon groups
             2.1.1 Methyltransferases
                2.1.1.41 sterol 24-C-methyltransferase
IUBMB Comments
Requires glutathione. Acts on a range of sterols with a 24(25)-double bond in the sidechain. While zymosterol is the preferred substrate it also acts on desmosterol, 5alpha-cholesta-7,24-dien-3beta-ol, 5alpha-cholesta-5,7,24-trien-3beta-ol, 4alpha-methylzymosterol and others. S-Adenosyl-L-methionine attacks the Si-face of the 24(25) double bond and the C-24 hydrogen is transferred to C-25 on the Re face of the double bond.
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This record set is specific for:
Saccharomyces cerevisiae
UNIPROT: P25087
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Word Map
The taxonomic range for the selected organisms is: Saccharomyces cerevisiae
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
erg6p, sterol 24-c-methyltransferase, c-24 sterol methyltransferase, tbsmt, pbsmt, c24-methyltransferase, 24-c-sterol methyltransferase, (s)-adenosyl-l-methionine:delta24(25)-sterol methyl transferase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
(S)-adenosyl-L-methionine:DELTA24(25)-sterol methyl transferase
-
-
24-C-sterol methyltransferase
-
-
24-sterol C-methyltransferase
-
-
-
-
C-24 sterol methyltransferase
-
-
C24-methyltransferase
-
-
DELTA24-methyltransferase
-
-
-
-
DELTA24-sterol methyltransferase
-
-
-
-
methyltransferase, DELTA24-sterol
-
-
-
-
phytosterol methyltransferase
-
-
-
-
S-adenosyl-4-methionine:sterol DELTA24-methyltransferase
-
-
-
-
S-adenosyl-L-methionine:DELTA24(23)-sterol methyltransferase
-
-
-
-
sterol C24-methyltransferase
-
-
sterol methyltransferase
-
-
zymosterol 24-methyltransferase
-
-
zymosterol-24-methyltransferase
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
S-adenosyl-L-methionine + 5alpha-cholesta-8,24-dien-3beta-ol = S-adenosyl-L-homocysteine + 24-methylene-5alpha-cholest-8-en-3beta-ol
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
methyl group transfer
-
-
-
-
PATHWAY SOURCE
PATHWAYS
-
-, -, -
SYSTEMATIC NAME
IUBMB Comments
S-adenosyl-L-methionine:zymosterol 24-C-methyltransferase
Requires glutathione. Acts on a range of sterols with a 24(25)-double bond in the sidechain. While zymosterol is the preferred substrate it also acts on desmosterol, 5alpha-cholesta-7,24-dien-3beta-ol, 5alpha-cholesta-5,7,24-trien-3beta-ol, 4alpha-methylzymosterol and others. S-Adenosyl-L-methionine attacks the Si-face of the 24(25) double bond and the C-24 hydrogen is transferred to C-25 on the Re face of the double bond.
CAS REGISTRY NUMBER
COMMENTARY hide
37257-07-1
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
26,27-dehydrozymosterol + S-adenosyl-L-methionine
26-homo-cholesta-8(9),23(24)E,26(26')-trienol + 26-homo-cholesta-8(9),26(26')-3beta,24beta-dienol + S-adenosyl-L-homocysteine
show the reaction diagram
-
mutants
-
?
26,27-dehydrozymosterol + S-adenosyl-L-methionine
? + S-adenosyl-L-homocysteine
show the reaction diagram
-
in contrast to the results with zymosterol, product analysis of the 26,27-dehydrozymosterol assays shows that multiple products are produced that occurred in different ratios determined by HPLC-radiocounting of the non-saponifiable lipid fractions. In these analyses two major product classes are identified, a neutral C26 sterol monol and a pair of C26-oxygenated diols
-
-
?
cycloartenol + S-adenosyl-L-methionine
24-methylenecycloartanol + S-adenosyl-L-homocysteine
show the reaction diagram
-
-
-
?
lanosterol + S-adenosyl-L-methionine
24-methylene-24,25-dihydrolanosterol + S-adenosyl-L-homocysteine
show the reaction diagram
-
-
-
?
S-adenosyl-L-methionine + zymosterol
S-adenosyl-L-homocysteine + fecosterol
show the reaction diagram
zymosterol + S-adenosyl-L-methionine
24-methylzymosta-8,25(27)-dienol + S-adenosyl-L-homocysteine
show the reaction diagram
-
mutants D79L and E82L
-
?
zymosterol + S-adenosyl-L-methionine
fecosterol + S-adenosyl-L-homocysteine
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
zymosterol + S-adenosyl-L-methionine
fecosterol + S-adenosyl-L-homocysteine
show the reaction diagram
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
(24,S),25-epiminozymosterol
-
-
(24R)-methyl-25-thiacholesteryl iodide
-
-
(24R,S),25-epiminolanosterol
-
-
(24R,S),25-epiminozymosterol
-
-
(24S)-methyl-25-thiacholesteryl iodide
-
-
22,25-Diazacholesterol
-
20R and 20S isomer
23-Azacholesterol
-
-
24(R,S),25-epiminozymosterol
-
reversible inhibitor, disrupts ergosterol homoeostasis by interrupting methyl addition to C-24 thereby impairing growth
24(R,S)-25-epiminolanosterol
-
-
24(S)-24-methyl-25-thiacholest-5-enol iodide
-
-
24-Azacholesterol
-
-
25-aza-24,25-dihydrolanosterol
-
-
25-Aza-24,25-dihydrozymosterol
-
-
25-azacholestane
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-
25-Azacholestanol
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-
25-Azacholesterol
-
-
25-Azacholesterol hydrochloride
-
-
25-thiacholesterol iodide
-
-
26,27-dehydrozymosterol
5'-deoxy-5'-(methylthio)adenosine
-
AdoMet analog, competitive inhibitor
ergosterol
S-isobutyladenosine
-
AdoMet analog, competitive inhibitor
sinefungin
-
AdoMet analog, competitive inhibitor
additional information
-
overview, diverse substrate and transition state analogues
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
glutathione
-
required
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.013 - 0.074
26,27-dehydrozymosterol
0.016 - 0.03
AdoMet
0.011 - 0.063
Zymosterol
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0001167 - 0.003333
26,27-dehydrozymosterol
0.003 - 0.01
AdoMet
0.0001 - 0.01333
Zymosterol
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00001
(24,S),25-epiminozymosterol
-
-
0.0000017 - 0.000003
(24R)-methyl-25-thiacholesteryl iodide
0.00001
(24R,S),25-epiminolanosterol
-
-
0.0000023 - 0.0000046
(24S)-methyl-25-thiacholesteryl iodide
0.000025 - 0.00036
24(R,S)-25-epiminolanosterol
0.00000125 - 0.000003
25-Aza-24,25-dihydrozymosterol
0.000048
25-azacholestane
-
-
0.000015
25-Azacholesterol hydrochloride
-
-
0.00003 - 0.00039
25-azalanosterol
0.0000011 - 0.0000024
25-thiacholesterol iodide
0.0011 - 0.011
26,27-dehydrozymosterol
0.022
5'-deoxy-5'-(methylthio)adenosine
-
-
0.00071 - 0.00088
ergosterol
0.058
S-isobutyladenosine
-
-
0.013
sinefungin
-
-
additional information
additional information
-
overview, diverse substrate and transition state analogues
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.0008
-
purified enzyme
0.53
-
purified enzyme
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6.8 - 7.7
-
less than half-maximal activity above and below
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
172000
-
gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
cooperativity among the subunits
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A193L
no enzyme activity
A193S
95% relative enzyme activity
A196L
73% relative enzyme activity
A200L
4% relative enzyme activity
A221L
25% relative enzyme activity
A350L
100% relative enzyme activity
C128L
no enzyme activity
C198L
95% relative enzyme activity
C198V
16% relative enzyme activity
E82D
55% relative enzyme activity
E82Q
90% relative enzyme activity
F178L
34% relative enzyme activity
F183L
100% relative enzyme activity
F188L
2% relative enzyme activity
F220L
29% relative enzyme activity
F269L
no enzyme activity
F357L
100% relative enzyme activity
F89L
100% relative enzyme activity
F91L
15% relative enzyme activity
G127L
1% relative enzyme activity
G129L
no enzyme activity
G131L
5% relative enzyme activity
G132L
50% relative enzyme activity
G217L
100% relative enzyme activity, mutant can perform C2-transfer activity to give 24-ethyl(idene)-sterols
G218L
100% relative enzyme activity, mutant can perform C2-transfer activity to give 24-ethyl(idene)-sterols
G347L
5% relative enzyme activity
G351L
90% relative enzyme activity
G352L
3% relative enzyme activity
G84L
14% relative enzyme activity
G86L
16% relative enzyme activity
H199Q
45% relative enzyme activity
H199R
20% relative enzyme activity
H90Q
no enzyme activity
H90R
no enzyme activity
I194L
67% relative enzyme activity
K215L
100% relative enzyme activity
K353L
56% relative enzyme activity
P133L
no enzyme activity
P201L
58% relative enzyme activity
P216L
65% relative enzyme activity
S354L
100% relative enzyme activity
S87E
100% relative enzyme activity
S87L
100% relative enzyme activity
S87Q
100% relative enzyme activity
S88L
61% relative enzyme activity
S88N
17% relative enzyme activity
T197L
93% relative enzyme activity
T219L
32% relative enzyme activity, mutant can perform C2-transfer activity to give 24-ethyl(idene)-sterols
V126L
1% relative enzyme activity
V130L
100% relative enzyme activity
V222L
27% relative enzyme activity
V349L
47% relative enzyme activity
W225F
100% relative enzyme activity
W225L
100% relative enzyme activity
W286F
100% relative enzyme activity
W286L
2% relative enzyme activity
W85F
100% relative enzyme activity
W85L
40% relative enzyme activity
Y153F
100% relative enzyme activity
Y153L
no enzyme activity
Y192F
100% relative enzyme activity, mutant can perform C2-transfer activity to give 24-ethyl(idene)-sterols
Y192L
95% relative enzyme activity
Y207F
100% relative enzyme activity
Y207L
3% relative enzyme activity
Y223F
100% relative enzyme activity, mutant can perform C2-transfer activity to give 24-ethyl(idene)-sterols
Y223L
100% relative enzyme activity
Y287L
20% relative enzyme activity
Y74F
100% relative enzyme activity
Y74L
100% relative enzyme activity
Y81L
90% relative enzyme activity
Y83F
95% relative enzyme activity
Y83L
90% relative enzyme activity
Y83W
100% relative enzyme activity
A193S
relative activity: 95%
A196L
relative activity: 73%
A200L
relative activity: 4%
A221L
relative activity: 25%
A350L
relative activity: 100%
C128L
C128S
-
Km (mM) (substrate: AdoMet): 30, kcat (1/sec) (substrate: AdoMet): 0.005, Kd (mM) (zymosterol): 0.005, Kd (mM) (AdoMet): 0.008
C198L
relative activity: 95%
C198V
relative activity: 16%
D125L
D152L
D189L
D229L
relative activity: 100%
D276L
E108L
E195L
E209L
E224L
relative activity: 74%
E246L
E82D
relative activity: 55%
E82Q
relative activity: 90%
F178L
relative activity: 34%
F188L
relative activity: 2%
F220L
relative activity: 29%
F357L
relative activity: 100%
F89L
relative activity: 100%
F91L
relative activity: 15%
G127L
relative activity: 1%
G131L
relative activity: 5%
G132L
relative activity: 50%
G217L
relative activity: 100%
G218L
relative activity: 100%
G347L
relative activity: 5%
G351L
relative activity: 90%
G352L
relative activity: 3%
G84L
relative activity: 14%
G86L
relative activity: 16%
H107L
H199L
H199Q
relative activity: 45%
H199R
relative activity: 20%
H224L
-
the ratio of turnover-number to KM-value for zymosterol is 1.4fold lower than the wild-type ratio
H238L
I194L
relative activity: 67%
K215L
relative activity: 100%
P133L
P201L
relative activity: 58%
P216L
relative activity: 65%
S354L
relative activity: 100%
S87L
relative activity: 100%
S88L
relative activity: 61%
S88N
relative activity: 17%
S97E
relative activity: 100%
S97Q
relative activity: 100%
T197L
relative activity: 93%
V126L
relative activity: 1%
V130L
relative activity: 100%
V349L
relative activity: 47%
W225F
relative activity: 60%
W225L
relative activity: 100%
W286F
relative activity: 51%
W286L
relative activity: 2%
W85F
relative activity: 55%
W85L
relative activity: 40%
Y153F
Y153L
Y207F
relative activity: 100%
Y207L
relative activity: 3%
Y223F
relative activity: 100%
Y223L
relative activity: 100%
Y287L
relative activity: 20%
Y74F
relative activity: 100%
Y74L
relative activity: 100%
Y81A
-
Km (mM): 0.018 (zymosterol), 0.023 (26,27-dehydrozymosterol), kcat (1/sec): 0.00083 (zymosterol), 0.000116 (26,27-dehydrozymosterol), Ki (mM): 0.011 (26,27-dehydrozymosterol), 0.00019 (25-azalanosterol), 0.00013 (24(R,S),25-epiminolanosterol), 0.071 (ergosterol)
Y81I
-
Km (mM): 0.021 (zymosterol), 0.027 (26,27-dehydrozymosterol), kcat (1/sec): 0.00433 (zymosterol), 0.00025 (26,27-dehydrozymosterol), Ki (mM): 0.009 (26,27-dehydrozymosterol), 0.00020 (25-azalanosterol), 0.00016 (24(R,S),25-epiminolanosterol), 0.077 (ergosterol)
Y81V
-
Km (mM): 0.026 (zymosterol), 0.024 (26,27-dehydrozymosterol), kcat (1/sec): 0.00116 (zymosterol), 0.00011 (26,27-dehydrozymosterol), Ki (mM): 0.007 (26,27-dehydrozymosterol), 0.000195 (25-azalanosterol), 0.000145 (24(R,S),25-epiminolanosterol), 0.074 (ergosterol)
Y81W
-
Km (mM): 0.017 (zymosterol), 0.023 (26,27-dehydrozymosterol), kcat (1/sec): 0.0133 (zymosterol), 0.0033 (26,27-dehydrozymosterol), Ki (mM): 0.010 (26,27-dehydrozymosterol), 0.00039 (25-azalanosterol), 0.00036 (24(R,S),25-epiminolanosterol), 0.088 (ergosterol)
Y83F
relative activity: 95%
Y83L
relative activity: 90%
Y83W
relative activity: 100%
additional information
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
4°C, 0.1 M Tris-HCl buffer, 1 mM Mg2+, 90% loss of activity overnight
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant mutant from E. coli
-
recombinant wild-type from E. coli
-
recombinant wild-type SMT is expressed and partially purified by anionic-exchange chromatography to generate ca. 85% pure Erg6p as determined by SDS-PAGE quantification of the target protein
-
wild-type and mutant enzymes
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli, recombinant protein, site-directed mutagenesis
expressed in Escherichia coli
expression in Escherichia coli, wild-type and mutant enzymes
-
expression of exchange mutants in Escherichia coli
-
overexpression in Escherichia coli
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
agriculture
-
construction of transgenic plants with modified sterol profile via recombinant sterol 24-C-methyltransferase shall protect crops against damage by insect infestation
degradation
-
active site of the yeast SMT has the necessary amino acids to generate products common to SMT catalysis of plants and protozoa, minor perturbations in the active site topography brought about by mutagenesis are sufficient to recognize new substrates
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Moore, J.T.; Gaylor, J.L.
Isolation and purification of an S-adenosylmethionine: delta 24-sterol methyltransferase from yeast
J. Biol. Chem.
244
6334-6340
1969
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Oelschlager, A.C.; Angus, R.H.; Pierce, A.M.; Pierce, H.D.; Srinivasan, R.
Azasterol inhibition of delta 24-sterol methyltransferase in Saccharomyces cerevisiae
Biochemistry
23
3582-3589
1984
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Bailey, R.B.; Thompson, E.D.; Parks, L.W.
Kinetic properties od S-adenosyl-L-methionine:24DELTA-sterol methyltransferase enzyme(s) in mitochondrial structures of Saccharomyces cerevisiae
Biochim. Biophys. Acta
334
127-136
1974
Saccharomyces cerevisiae
-
Manually annotated by BRENDA team
Nes, W.D.
Sterol methyl transferase: enzymology and inhibition
Biochim. Biophys. Acta
1529
63-88
2000
Candida albicans, Saccharomyces cerevisiae
Manually annotated by BRENDA team
Venkatramesh, M.; Guo, D.A.; Jia, Z.; Nes, W.D.
Mechanism and structural requirements for transformation of substrates by the (S)-adenosyl-L-methionine:DELTA24(25)-sterol methyl transferase from Saccharomyces cerevisiae
Biochim. Biophys. Acta
1299
313-324
1996
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Nes, W.D.; Guo, D.a.; Zhou, W.
Substrate-based inhibitors of the (S)-adenosyl-L-methionine: DELTA24(25)- to DELTA24(28)-sterol methyltransferase from Saccharomyces cerevisiae
Arch. Biochem. Biophys.
342
68-81
1997
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Nes, W.D.; McCourt, B.S.; Zhou, W.X.; Ma, J.; Marshall, J.A.; Peek, L.A.; Brennan, M.
Overexpression, purification, and stereochemical studies of the recombinant (S)-adenosyl-L-methionine: DELTA24(25)-to DELTA24(28)-sterol methyl transferase enzyme from Saccharomyces cerevisiae
Arch. Biochem. Biophys.
353
297-311
1998
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Acuna-Johnson, A.P.; Oehlschlager, A.C.; Pierce, A.M.; Pierce, H.D., Jr.; Czyzewska, E.K.
Stereochemistry of yeast DELTA24-sterol methyl transferase
Bioorg. Med. Chem.
5
821-832
1997
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Nes, W.D.; Marshall, J.A.; Jia, Z.; Jaradat, T.T.; Song, Z.; Jayasimha, P.
Active site mapping and substrate channeling in the sterol methyltransferase pathway
J. Biol. Chem.
277
42549-42556
2002
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Nes, W.D.; Jayasimha, P.; Zhou, W.; Kanagasabai, R.; Jin, C.; Jaradat, T.T.; Shaw, R.W.; Bujnicki, J.M.
Sterol methyltransferase: functional analysis of highly conserved residues by site-directed mutagenesis
Biochemistry
43
569-576
2004
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Mo, C.; Valachovic, M.; Bard, M.
The ERG28-encoded protein, Erg28p, interacts with both the sterol C-4 demethylation enzyme complex as well as the late biosynthetic protein, the C-24 sterol methyltransferase (Erg6p)
Biochim. Biophys. Acta
1686
30-36
2004
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Nes, W.D.
Enzyme redesign and interactions of substrate analogues with sterol methyltransferase to understand phytosterol diversity, reaction mechanism and the nature of the active site
Biochem. Soc. Trans.
33
1189-1196
2005
Candida albicans, Fusarium sp., Saccharomyces cerevisiae, Trypanosoma brucei
Manually annotated by BRENDA team
Nes, W.D.; Jayasimha, P.; Song, Z.
Yeast sterol C24-methyltransferase: role of highly conserved tyrosine-81 in catalytic competence studied by site-directed mutagenesis and thermodynamic analysis
Arch. Biochem. Biophys.
477
313-323
2008
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Ganapathy, K.; Jones, C.W.; Stephens, C.M.; Vatsyayan, R.; Marshall, J.A.; Nes, W.D.
Molecular probing of the Saccharomyces cerevisiae sterol 24-C methyltransferase reveals multiple amino acid residues involved with C2-transfer activity
Biochim. Biophys. Acta
1781
344-351
2008
Saccharomyces cerevisiae, Saccharomyces cerevisiae (P25087)
Manually annotated by BRENDA team
Jayasimha, P.; Nes, W.D.
Photoaffinity labeling and mutational analysis of 24-C-sterol methyltransferase defines the AdoMet binding site
Lipids
43
681-693
2008
Saccharomyces cerevisiae
Manually annotated by BRENDA team