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Information on EC 1.7.3.1 - nitroalkane oxidase and Organism(s) Fusarium oxysporum and UniProt Accession Q8X1D8

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IUBMB Comments
Has an absolute requirement for FAD . While nitroethane may be the physiological substrate , the enzyme also acts on several other nitroalkanes, including 1-nitropropane, 2-nitropropane, 1-nitrobutane, 1-nitropentane, 1-nitrohexane, nitrocyclohexane and some nitroalkanols . Differs from EC 1.13.11.16, nitronate monooxygenase, in that the preferred substrates are neutral nitroalkanes rather than anionic nitronates .
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Fusarium oxysporum
UNIPROT: Q8X1D8
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The taxonomic range for the selected organisms is: Fusarium oxysporum
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota
Synonyms
nao, nitroalkane oxidase, pa4202, nitroalkane-oxidizing enzyme, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
nitroalkane oxidase
-
-
nitroethane oxidase
nitroethane:oxygen oxidoreductase
-
-
-
-
oxidase, nitroethane
-
-
-
-
additional information
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
a nitroalkane + H2O + O2 = an aldehyde or ketone + nitrite + H2O2
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
-
oxidation
-
-
-
-
reduction
-
-
-
-
PATHWAY SOURCE
PATHWAYS
-
-
SYSTEMATIC NAME
IUBMB Comments
nitroalkane:oxygen oxidoreductase
Has an absolute requirement for FAD [4]. While nitroethane may be the physiological substrate [2], the enzyme also acts on several other nitroalkanes, including 1-nitropropane, 2-nitropropane, 1-nitrobutane, 1-nitropentane, 1-nitrohexane, nitrocyclohexane and some nitroalkanols [4]. Differs from EC 1.13.11.16, nitronate monooxygenase, in that the preferred substrates are neutral nitroalkanes rather than anionic nitronates [4].
CAS REGISTRY NUMBER
COMMENTARY hide
9029-36-1
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
1-nitrohexane + H2O + O2
?
show the reaction diagram
-
-
-
?
1-nitrohexane + O2 + H2O
hexanal + nitrite + H2O2
show the reaction diagram
-
-
-
?
1-nitrooctane + H2O + O2
?
show the reaction diagram
-
-
-
?
1-nitrooctane + O2 + H2O
octanal + nitrite + H2O2
show the reaction diagram
-
-
-
?
1-nitropropane + H2O + O2
propionaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
?
nitroethane + H2O
ethanal + nitrite + H2O2
show the reaction diagram
solvent isotope and viscositiy effects: the kcat proton inventory is consistent with a single exchangeable proton in flight, while the kcat/KM is consistent with either a single proton in flight in the transition state or a medium effect. Increasing the solvent viscosity does not affect the kcat or kcat/KM value significantly, establishing that nitroethane binding is at equilibrium and that product release does not limit kcat
-
-
?
nitroethane + H2O + O2
ethanal + nitrite + H2O2
show the reaction diagram
-
-
-
?
nitroethane + O2 + H2O
acetaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
?
1-nitroalkane + O2 + H2O
aldehyde + H2O2 + nitrite
show the reaction diagram
-
-
-
-
?
1-nitrobutane + O2
butyraldehyde + HNO2
show the reaction diagram
-
-
-
-
?
1-nitrobutane + O2 + H2O
butyraldehyde + nitrite + H2O2
show the reaction diagram
1-nitrohexane + O2
hexanaldehyde + HNO2
show the reaction diagram
-
-
-
-
?
1-nitrohexane + O2 + H2O
hexanal + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
1-nitrohexane + O2 + H2O
hexanaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
1-nitropentane + O2
pentanaldehyde + HNO2
show the reaction diagram
-
-
-
-
?
1-nitropropane + H2O + O2
propionaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
1-nitropropane + O2
propionaldehyde + HNO2
show the reaction diagram
-
-
-
-
?
2-nitropropane + O2
acetone + HNO2
show the reaction diagram
-
-
-
-
?
2-nitropropane + O2
acetone + nitrite
show the reaction diagram
-
-
-
-
?
benzoate + H2O + O2
?
show the reaction diagram
-
-
-
-
r
nitroalkane + O2 + H2O
aldehyde or ketone + nitrite + H2O2
show the reaction diagram
-
neutral nitroalkanes
-
-
?
nitroethane + H2O
acetaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
nitroethane + H2O + O2
?
show the reaction diagram
-
-
-
-
?
nitroethane + H2O + O2
acetaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
nitroethane + O2
acetaldehyde + HNO2
show the reaction diagram
nitroethane + O2 + H2O
ethanal + nitrite + H2O2
show the reaction diagram
nitroethane + O2 + H2O
ethanal + nitrite + H2O2 + H+
show the reaction diagram
-
-
-
-
?
phenylacetic acid + H2O + O2
?
show the reaction diagram
-
-
-
-
r
phenylnitromethane + O2
benzaldehyde + HNO2
show the reaction diagram
-
-
-
-
?
phenylnitromethane + O2 + H2O
? + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
phenylnitromethane + O2 + H2O
phenylaldehyde + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
nitroethane + O2 + H2O
ethanal + nitrite + H2O2
show the reaction diagram
-
-
-
-
?
additional information
?
-
-
the physiological role of the enzyme is the oxidation of nitroaliphatic species
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1-nitrohexane
-
1-nitrooctane
-
acetaldehyde
-
noncompetitive inhibitor versus nitroethane due to formation of a dead-end complex between the oxidized enzyme and the product, competitive inhibitor versus oxygen
benzoate
-
competitive
Butyraldehyde
-
noncompetitive inhibitor versus nitroethane due to formation of a dead-end complex between the oxidized enzyme and the product
cyanide
-
inactivation of the enzyme by trapping of the electrophilic imine reaction intermediate, formation of a cyanoalkyl intermediate, reaction with the substrate after proton abstraction but before flavin oxidation
nitroethane
-
substrate inhibition detected in mutant enzyme R409K, no substrate inhibition is detected in mutant enzyme D402E
pentanoate
-
-
phenylacetic acid
-
competitive
Sodium cyanide
-
2 mM and above, complete inhibition
spermine
-
weak inhibitor at pH 8.0
valerate
-
competitive
additional information
-
no substrate inhibition
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
imidazole
-
unprotonated imidazole causes a 5fold increase in maximal velocity
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.04 - 0.2
1-nitrohexane
0.03 - 0.3
1-nitrooctane
2.1 - 26.3
nitroethane
0.03 - 0.18
1-nitrobutane
5.1
benzoate
-
-
0.042 - 26.3
nitroethane
0.011 - 0.082
O2
13.1
phenylacetic acid
-
-
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.3 - 2
1-nitrohexane
0.2 - 4.4
1-nitrooctane
1 - 15
nitroethane
2.6 - 15
nitroethane
2.6
O2
-
pH 8.0, 30°C, mutant enzyme R409K
additional information
additional information
-
-
-
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.098 - 6.3
nitroethane
2.2 - 6.3
nitroethane
140 - 580
O2
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
130
1-nitrohexane
mutant S276A, pH 8.0, 30°C
8.3 - 26
1-nitrooctane
2 - 5
nitroethane
wild-type, pH 8.0, 30°C
152
nitroethane
-
pH 8.0, 30°C, mutant enzyme R409K, substrate inhibition constant
200
spermine
-
at pH 8.0
additional information
additional information
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25 - 27
-
assay at
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
temperature-dependency analysis
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
NAO_FUSOX
439
0
48162
Swiss-Prot
other Location (Reliability: 4)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
147300
-
equilibrium sedimentation
185000
-
gel filtration
47955
48162
-
x * 48162, amino acid sequence calculation, enzyme forms homodimers and homotetramers with a preference for the latter
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
-
2 * 47955, MALDI-TOF mass spectrometry
homodimer or homotetramer
-
-
homotetramer
-
x-ray crystallography
oligomer
tetramer
-
4 * 47955, MALDI-TOF mass spectrometry
additional information
-
enzyme structure analysis, overview
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
crystallization data of mutant D402N in complex with 1-nitrohexane or 1-nitrooctane show the presence of substrate in the binding site. The aliphatic chain of the substrate extends into a tunnel leading to the enzyme surface. The oxygens of the substrate nitro group interact both with amino acid residues and with the 2'-hydroxyl of the FAD. The structure of wild-type enzyme trapped with cyanide during oxidation of 1-nitrohexane shows the presence of the modified flavin. A continuous hydrogen bond network connects the nitrogen of the CN-hexyl-FAD through the FAD 2'-hydroxyl to a chain of water molecules extending to the protein surface. Data for mutant S276A in complex with nitrohexane
hanging drop vapour diffusion method
-
hexagonal rod-shaped crystals of R409K and D402E NAO were obtained using hanging drop vapor-diffusion methods
-
purified recombinant wild-type enzyme, crystallization of the native enzyme in 2 different crystal forms and of the selenomethionine-labeled enzyme in a third one, hanging drop vapour diffusion method, sodium cacodylate buffer, pH 7.5, containing spermidine hydrochloride, and PEG 4000 at varying concentrations for all 3 mixtures, crystal form 2 requires addition of 1,6-hexanediol at 8% w/v, crystal form 3 requires DTT at 10 mM, 4°C, 10-14 days, X-ray diffraction structure determinations and analysis at 3.2-2.0 A resolution or below, three-wavelength MAD data
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
C397S
the mutant shows reduced activity compared to the wild type enzyme
D402E
the mutant shows severely reduced activity compared to the wild type enzyme
D402N
R409K
the mutant shows severely reduced activity compared to the wild type enzyme
S171A
the mutant shows reduced activity compared to the wild type enzyme
S276A
Y398F
the mutant shows reduced activity compared to the wild type enzyme
C397S
-
the mutation results in decreases in the rate constants for removal of the substrate proton by about 5fold and decreases in the rate constant for product release of about 2fold, the mutant enzyme is less stable than the wild type enzyme
D402A
-
site-directed mutation of the active site base, 20fold reduced catalytic efficiency with neutral nitroethane as substrate compared to the wild-type enzyme, while the wild-type enzyme prefers the neutral substrate the mutant prefers the anion substrate form, altered pH-dependence with both substrate forms compared to the wild-type enzyme
D402E
D402N
-
site-directed mutation of the active site base, 140fold reduced catalytic efficiency with neutral nitroethane as substrate compared to the wild-type enzyme, while the wild-type enzyme prefers the neutral substrate the mutant prefers the anion substrate form, altered pH-dependence with both substrate forms compared to the wild-type enzyme
R409K
S171A
-
the mutation results in decreases in the rate constants for removal of the substrate proton by about 5fold and decreases in the rate constant for product release of about 2fold
S171T
-
the mutation results in decreases in the rate constants for removal of the substrate proton by about 5fold and decreases in the rate constant for product release of about 2fold, the mutation alters the rate constant for flavin oxidation
S171V
-
the mutation results in decreases in the rate constants for removal of the substrate proton by about 5fold and decreases in the rate constant for product release of about 2fold, the mutation alters the rate constant for flavin oxidation
Y398F
-
the mutation results in decreases in the rate constants for removal of the substrate proton by about 5fold and decreases in the rate constant for product release of about 2fold, the mutant enzyme is less stable than the wild type enzyme
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant enzyme
-
recombinant enzyme from Escherichia coli
-
recombinant wild-type and mutant enzymes
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
-
expression in Escherichia coli
-
expression in Escherichia coli strains BL21(DE3) and methionine auxotroph B834(DE3)
-
expression of wild-type and mutant enzymes
-
recombinant expression of wild-type and mutant D402E enzymes
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
the enzyme expression is induced in media containing nitroethane
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Heaseley, C.J.; Fitzpatrick, P.F.
Kinetic mechanism and substrate specificity of nitroalkane oxidase
Biochem. Biophys. Res. Commun.
225
6-10
1996
Fusarium oxysporum
Manually annotated by BRENDA team
Gadda, G.; Fitzpatrick, P.F.
Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects
Biochemistry
39
1406-1410
2000
Fusarium oxysporum
Manually annotated by BRENDA team
Gadda, G.; Fitzpatrick, P.F.
Iso-mechanism of nitroalkane oxidase: 1. Inhibition studies and activation by imidazole
Biochemistry
39
1400-1405
2000
Fusarium oxysporum
Manually annotated by BRENDA team
Gadda, G.; Fitzpatrick, P.F.
Biochemical and physical characterization of the active FAD-containing form of nitroalkane oxidase from Fusarium oxysporum
Biochemistry
37
6154-6164
1998
Fusarium oxysporum
Manually annotated by BRENDA team
Daubner, S.C.; Gadda, G.; Valley, M.P.; Fitzpatrick, P.F.
Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily
Proc. Natl. Acad. Sci. USA
99
2702-2707
2002
Fusarium oxysporum
Manually annotated by BRENDA team
Nagpal, A.; Valley, M.P.; Fitzpatrick, P.F.; Orville, A.M.
Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms
Acta Crystallogr. Sect. D
60
1456-1460
2004
Fusarium oxysporum
Manually annotated by BRENDA team
Fitzpatrick, P.F.; Orville, A.M.; Nagpal, A.; Valley, M.P.
Nitroalkane oxidase, a carbanion-forming flavoprotein homologous to acyl-CoA dehydrogenase
Arch. Biochem. Biophys.
433
157-165
2005
Fusarium oxysporum
Manually annotated by BRENDA team
Valley, M.P.; Fitzpatrick, P.F.
Reductive half-reaction of nitroalkane oxidase: effect of mutation of the active site apartate to glutamate
Biochemistry
42
5850-5856
2003
Fusarium oxysporum
Manually annotated by BRENDA team
Valley, M.P.; Fitzpatrick, P.F.
Inactivation of nitroalkane oxidase upon mutation of the active site base and rescue with a deprotonated substrate
J. Am. Chem. Soc.
125
8738-8739
2003
Fusarium oxysporum
Manually annotated by BRENDA team
Valley, M.P.; Fitzpatrick, P.F.
Comparison of enzymatic and nonenzymatic nitroethane anion formation: thermodynamics and contribution of tunneling
J. Am. Chem. Soc.
126
6244-6245
2004
Fusarium oxysporum
Manually annotated by BRENDA team
Valley, M.P.; Tichy, S.E.; Fitzpatrick, P.F.
Establishing the kinetic competency of the cationic imine intermediate in nitroalkane oxidase
J. Am. Chem. Soc.
127
2062-2066
2005
Fusarium oxysporum
Manually annotated by BRENDA team
Nagpal, A.; Valley, M.P.; Fitzpatrick, P.F.; Orville, A.M.
Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover
Biochemistry
45
1138-1150
2006
Fusarium oxysporum
Manually annotated by BRENDA team
Fitzpatrick, P.F.; Bozinovski, D.M.; Heroux, A.; Shaw, P.G.; Valley, M.P.; Orville, A.M.
Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase
Biochemistry
46
13800-13808
2007
Fusarium oxysporum
Manually annotated by BRENDA team
Heroux, A.; Bozinovski, D.M.; Valley, M.P.; Fitzpatrick, P.F.; Orville, A.M.
Crystal structures of intermediates in the nitroalkane oxidase reaction
Biochemistry
48
3407-3416
2009
Fusarium oxysporum (Q8X1D8)
Manually annotated by BRENDA team
Valley, M.P.; Fenny, N.S.; Ali, S.R.; Fitzpatrick, P.F.
Characterization of active site residues of nitroalkane oxidase
Bioorg. Chem.
38
115-119
2010
Fusarium oxysporum
Manually annotated by BRENDA team
Gadda, G.; Fitzpatrick, P.F.
Solvent isotope and viscosity effects on the steady-state kinetics of the flavoprotein nitroalkane oxidase
FEBS Lett.
587
2785-2789
2013
Fusarium oxysporum (Q8X1D8), Fusarium oxysporum ATCC 695 (Q8X1D8)
Manually annotated by BRENDA team
Torres-Guzman, J.; Padilla-Guerrero, I.; Cervantes-Quintero, K.; Martinez-Vazquez, A.; Ibarra-Guzman, M.; Gonzalez-Hernandez, G.
Peculiarities of nitronate monooxygenases and perspectives for in vivo and in vitro applications
Appl. Microbiol. Biotechnol.
105
8019-8032
2021
Fusarium oxysporum
Manually annotated by BRENDA team
Fitzpatrick, P.F.
Nitroalkane oxidase Structure and mechanism
Arch. Biochem. Biophys.
632
41-46
2017
Fusarium oxysporum (Q8X1D8)
Manually annotated by BRENDA team