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Reference on EC 1.4.1.16 - diaminopimelate dehydrogenase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Bartlett, A.T.M.; White, P.J.
Species of Bacillus that make a vegetative peptidoglycan containing lysine lack diaminopimelate epimerase but have diaminopimelate dehydrogenase
J. Gen. Microbiol.
131
2145-2152
1985
Sporosarcina globispora, Paenibacillus macerans, Sporosarcina pasteurii, Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Lam, L.K.P.; Arnold, L.D.; Kalantar, T.H.; Kelland, J.G.; Lane-Bell, P.M.; Palcic, M.M.; Pickard, M.A.; Vederas, J.C.
Analogs of diaminopimelic acid as inhibitors of meso-diaminopimelate dehydrogenase and LL-diaminopimelate epimerase
J. Biol. Chem.
263
11814-11819
1988
Lysinibacillus sphaericus
Manually annotated by BRENDA team
Abbott, S.D.; Lane-Bell, P.; Sidhu, K.P.S.; Vederas, J.C.
Synthesis and testing of heterocyclic analogues of diaminopimelic acid (DAP) as inhibitors of DAP dehydrogenase and DAP epimerase
J. Am. Chem. Soc.
116
6513-6520
1994
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Chatterjee, S.P.; Singh, B.K.; Gilvarg, C.
Biosynthesis of lysine in plants: the putative role of meso-diaminopimelate dehydrogenase
Plant Mol. Biol.
26
285-290
1994
no activity in Chlamydomonas reinhardtii, no activity in Glycine max, no activity in Nicotiana tabacum, no activity in Zea mays
Manually annotated by BRENDA team
Yeh, P.; Sicard, A.M.; Sinskey, A.J.
General organization of the genes specifically involved in the diaminopimelate-lysine biosynthetic pathway of Corynebacterium glutamicum
Mol. Gen. Genet.
212
105-111
1988
Corynebacterium glutamicum, Corynebacterium glutamicum AS019
Manually annotated by BRENDA team
Cremer, J.; Treptow, C.; Eggeling, L.; Sahm, H.
Regulation of enzymes of lysine biosynthesis in Corynebacterium glutamicum
J. Gen. Microbiol.
134
3221-3229
1988
Corynebacterium glutamicum
Manually annotated by BRENDA team
Bartlett, A.T.M.; White, P.J.
Regulation of the enzymes of lysine biosynthesis in Bacillus sphaericus NCTC 9602 during vegetative growth
J. Gen. Microbiol.
132
3169-3177
1986
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Ishino, S.; Mizukami, T.; Yamaguchi, K.; Katsumata, R.; Araki, K.
Cloning and sequencing of the meso-diaminopimelate-D-dehydrogenase (ddh) gene of Corynebacterium glutamicum
Agric. Biol. Chem.
52
2903-2909
1988
Corynebacterium glutamicum, Corynebacterium glutamicum RRL-5
-
Manually annotated by BRENDA team
Ishino, S.; Mizukami, T.; Yamaguchi, K.; Katsumata, R.; Araki, K.
Nucleotide sequence of the meso-diaminopimelate D-dehydrogenase gene from Corynebacterium glutamicum
Nucleic Acids Res.
15
3917
1987
Corynebacterium glutamicum
Manually annotated by BRENDA team
Misono, H.; Ogasawara, M.; Nagasaki, S.
Characterization of meso-diaminopimelate dehydrogenase from Corynebacterium glutamicum and its distribution in bacteria
Agric. Biol. Chem.
50
2729-2734
1986
Achromobacter polymorph, Achromobacter superficialis, Enterobacter cloacae, Agrobacterium tumefaciens, Alcaligenes viscolactis, Glutamicibacter protophormiae, Terrabacter tumescens, Bacillus amyloliquefaciens, Brevibacillus brevis, Bacillus cereus, Bacillus licheniformis, Lysinibacillus sphaericus, Bacterium mycoides, Corynebacterium ammoniagenes, Corynebacterium glutamicum, Brevibacterium sp., Corynebacterium pseudodiphtheriticum, Hafnia alvei, Flavobacterium suaveolens, Micrococcus luteus, Kocuria rosea, Morganella morganii, no activity in Escherichia coli, no activity in Klebsiella pneumoniae, no activity in Staphylococcus aureus, Providencia rettgeri, Pseudomonas aeruginosa, Pseudomonas alkanolytica, Pseudomonas putida, Pseudomonas chlororaphis subsp. aureofaciens, Pseudomonas cruciviae, Pseudomonas fragi
-
Manually annotated by BRENDA team
Misono, H.; Ogasawara, M.; Nagasaki, S.
Purification and properties of meso-diaminopimelate dehydrogenase from Brevibacterium sp.
Agric. Biol. Chem.
50
1329-1330
1986
Brevibacterium sp., Brevibacterium sp. ICR 7000
-
Manually annotated by BRENDA team
White, P.J.
2,6-Diaminopimelate
Methods Enzym. Anal. , 3rd Ed. (Bergmeyer, H. U. , ed. )
8
377-383
1985
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Ishino, S.; Yamaguchi, K.; Shirahata, K.; Araki, K.
Involvement of meso-alpha,epsilon-diamino-pimelate D-dehydrogenase in lysine biosynthesis in Corynebacterium glutamicum
Agric. Biol. Chem.
48
2257-2260
1984
Corynebacterium glutamicum
-
Manually annotated by BRENDA team
White, P.J.
The essential role of diaminopimelate dehydrogenase in the biosynthesis of lysine by Bacillus sphaericus
J. Gen. Microbiol.
129
739-749
1983
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Misono, H.; Nagasaki, S.; Soda, K.
meso-alpha,epsilon-Diaminopimelate D-dehydrogenase: sulfhydryl group modification
Agric. Biol. Chem.
45
1455-1460
1981
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Misono, H.; Soda, K.
Properties of meso-alpha,epsilon-diaminopimelate D-dehydrogenase from Bacillus sphaericus
J. Biol. Chem.
255
10599-10605
1980
Lysinibacillus sphaericus
Manually annotated by BRENDA team
Misono, H.; Soda, K.
Purification and properties of meso-alpha,epsilon-diaminopimelate D-dehydrogenase from Bacillus sphaericus
Agric. Biol. Chem.
44
227-229
1980
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Misono, H.; Togawa, H.; Soda, K.
meso-alpha,epsilon-Diaminopimelate D-dehydrogenase: distribution and the reaction product
J. Bacteriol.
137
22-27
1979
Lysinibacillus sphaericus, Corynebacterium glutamicum, Brevibacterium sp., Erwinia aroidea, Proteus mirabilis, Proteus vulgaris, Pseudomonas fluorescens, Sarcina subflava
Manually annotated by BRENDA team
Misono, H.; Togawa, H.; Yamamoto, T.; Soda, K.
Occurrence of meso-alpha, epsilon-diaminopimelate dehydrogenase in Bacillus sphaericus
Biochem. Biophys. Res. Commun.
72
89-93
1976
Lysinibacillus sphaericus
Manually annotated by BRENDA team
Scapin, G.; Reddy, S.G.; Blanchard, J.S.
Three-dimensional structure of meso-diaminopimelic acid dehydrogenase from Corynebacterium glutamicum
Biochemistry
35
13540-13551
1996
Corynebacterium glutamicum (P04964), Corynebacterium glutamicum
Manually annotated by BRENDA team
Reddy, S.G.; Scapin, G.; Blanchard, J.S.
Expression, purification, and crystallization of meso-diaminopimelate dehydrogenase from Corynebacterium glutamicum
Proteins Struct. Funct. Genet.
25
514-516
1996
Corynebacterium glutamicum
Manually annotated by BRENDA team
Wang, F.; Scapin, G.; Blanchard, J.S.; Angeletti, R.H.
Substrate binding and conformational changes of Corynebacterium glutamicum diaminopimelate dehydrogenase revealed by hydrogen/deuterium exchange and electrospray mass spectrometry
Protein Sci.
7
293-299
1998
Corynebacterium glutamicum
Manually annotated by BRENDA team
Scapin, G.; Cirilli, M.; Reddy, S.G.; Gao, Y.; Vederas, J.C.; Blanchard, J.S.
Substrate and inhibitor binding sites in Corynebacterium glutamicum diaminopimelate dehydrogenase
Biochemistry
37
3278-3285
1998
Corynebacterium glutamicum (P04964), Corynebacterium glutamicum
Manually annotated by BRENDA team
Cirilli, M.; Scapin, G.; Sutherland, A.; Vederas, J.C.; Blanchard, J.S.
The three-dimensional structure of the ternary complex of Corynebacterium glutamicum diaminopimelate dehydrogenase-NADPH-L-2-amino-6-methylene-pimelate
Protein Sci.
9
2034-2037
2000
Lysinibacillus sphaericus, Corynebacterium glutamicum
Manually annotated by BRENDA team
Kind, S.; Jeong, W.K.; Schroeder, H.; Wittmann, C.
Systems-wide metabolic pathway engineering in Corynebacterium glutamicum for bio-based production of diaminopentane
Metab. Eng.
12
341-351
2010
Corynebacterium glutamicum
Manually annotated by BRENDA team
Akita, H.; Fujino, Y.; Doi, K.; Ohshima, T.
Highly stable meso-diaminopimelate dehydrogenase from an Ureibacillus thermosphaericus strain A1 isolated from a Japanese compost: purification, characterization and sequencing
AMB Express
1
43
2011
Ureibacillus thermosphaericus, Ureibacillus thermosphaericus A1
Manually annotated by BRENDA team
Gao, X.; Chen, X.; Liu, W.; Feng, J.; Wu, Q.; Hua, L.; Zhu, D.
A novel meso-Diaminopimelate dehydrogenase from Symbiobacterium thermophilum: overexpression, characterization, and potential for D-amino acid synthesis
Appl. Environ. Microbiol.
78
8595-8600
2012
Symbiobacterium thermophilum (Q67PI3), Symbiobacterium thermophilum
Manually annotated by BRENDA team
Gao, X.; Huang, F.; Feng, J.; Chen, X.; Zhang, H.; Wang, Z.; Wu, Q.; Zhu, D.
Engineering the meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum by site saturation mutagenesis for D-phenylalanine synthesis
Appl. Environ. Microbiol.
79
5078-5081
2013
Symbiobacterium thermophilum (Q67PI3), Symbiobacterium thermophilum
Manually annotated by BRENDA team
Akita, H.; Doi, K.; Kawarabayasi, Y.; Ohshima, T.
Creation of a thermostable NADP+-dependent D-amino acid dehydrogenase from Ureibacillus thermosphaericus strain A1 meso-diaminopimelate dehydrogenase by site-directed mutagenesis
Biotechnol. Lett.
34
1693-1699
2012
Ureibacillus thermosphaericus (G1UII1), Ureibacillus thermosphaericus, Ureibacillus thermosphaericus A1 (G1UII1)
Manually annotated by BRENDA team
Akita, H.; Seto, T.; Ohshima, T.; Sakuraba, H.
Structural insight into the thermostable NADP+-dependent meso-diaminopimelate dehydrogenase from Ureibacillus thermosphaericus
Acta Crystallogr. Sect. D
71
1136-1146
2015
Ureibacillus thermosphaericus (G1UII1), Ureibacillus thermosphaericus
Manually annotated by BRENDA team
Gao, X.; Zhang, Z.; Zhang, Y.; Li, Y.; Zhu, H.; Wang, S.; Li, C.
A newly determined member of the meso-diaminopimelate dehydrogenase family with a broad substrate spectrum
Appl. Environ. Microbiol.
83
e00476
2017
Symbiobacterium thermophilum, Symbiobacterium thermophilum IAM14863
Manually annotated by BRENDA team
Liu, W.; Li, Z.; Huang, C.H.; Guo, R.T.; Zhao, L.; Zhang, D.; Chen, X.; Wu, Q.; Zhu, D.
Structural and mutational studies on the unusual substrate specificity of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
ChemBioChem
15
217-222
2014
Symbiobacterium thermophilum (Q67PI3), Symbiobacterium thermophilum
Manually annotated by BRENDA team
Liu, W.; Guo, R.; Chen, X.; Li, Z.; Gao, X.; Huang, C.; Wu, Q.; Feng, J.; Zhu, D.
Structural analysis reveals the substrate-binding mechanism for the expanded substrate specificity of mutant meso-diaminopimelate dehydrogenase
ChemBioChem
16
924-929
2015
Clostridium tetani (Q890V3), Clostridium tetani E88 (Q890V3), Clostridium tetani E88
Manually annotated by BRENDA team
Zhao, L.; Liu, W.; Chen, X.; Wang, M.; Feng, J.; Wu, Q.; Zhu, D.
Effect of residue Y76 on co-enzyme specificity of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
Chin. J. Biotechnol.
31
1108-1118
2015
Symbiobacterium thermophilum (Q67PI3), Symbiobacterium thermophilum
Manually annotated by BRENDA team
Stone, V.N.; Parikh, H.I.; El-rami, F.; Ge, X.; Chen, W.; Zhang, Y.; Kellogg, G.E.; Xu, P.
Identification of small-molecule inhibitors against meso-2,6-diaminopimelate dehydrogenase from Porphyromonas gingivalis
PLoS ONE
10
e0141126
2015
Porphyromonas gingivalis (Q7MW40), Porphyromonas gingivalis, Porphyromonas gingivalis W83 (Q7MW40)
Manually annotated by BRENDA team
Akita, H.; Nakamichi, Y.; Morita, T.; Matsushika, A.
Characterization of an NAD(P)+-dependent meso-diaminopimelate dehydrogenase from Thermosyntropha lipolytica
Biochim. Biophys. Acta
1868
140476
2020
Thermosyntropha lipolytica (A0A1M5M5H3), Thermosyntropha lipolytica, Thermosyntropha lipolytica DSM 11003 (A0A1M5M5H3)
Manually annotated by BRENDA team
Ma, H.; Stone, V.N.; Wang, H.; Kellogg, G.E.; Xu, P.; Zhang, Y.
Diaminopimelic acid (DAP) analogs bearing isoxazoline moiety as selective inhibitors against meso-diaminopimelate dehydrogenase (m-Ddh) from Porphyromonas gingivalis
Bioorg. Med. Chem. Lett.
27
3840-3844
2017
Porphyromonas gingivalis (Q7MW40), Porphyromonas gingivalis, Porphyromonas gingivalis W83 (Q7MW40)
Manually annotated by BRENDA team
Cheng, X.; Chen, X.; Feng, J.; Wu, Q.; Zhu, D.
Structure-guided engineering of meso-diaminopimelate dehydrogenase for enantioselective reductive amination of sterically bulky 2-keto acids
Catal. Sci. Technol.
8
4994-5002
2018
Symbiobacterium thermophilum (Q67PI3)
-
Manually annotated by BRENDA team
Zhang, Y.; Ma, Q.; Dong, M.; Zhang, X.; Chen, Y.; Gao, X.; Song, Y.
Essential role of amino acid position 71 in substrate preference by meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum IAM14863
Enzyme Microb. Technol.
111
57-62
2018
Corynebacterium glutamicum (P04964), Symbiobacterium thermophilum (Q67PI3), Corynebacterium glutamicum ATCC 13032 (P04964)
Manually annotated by BRENDA team
Gao, X.; Ma, Q.; Chen, M.; Dong, M.; Pu, Z.; Zhang, X.; Song, Y.
Insight into the highly conserved and differentiated cofactor-binding sites of meso-diaminopimelate dehydrogenase StDAPDH
J. Chem. Inf. Model.
59
2331-2338
2019
Symbiobacterium thermophilum (Q67PI3), Symbiobacterium thermophilum
Manually annotated by BRENDA team
Wang, H.; Kellogg, G.E.; Xu, P.; Zhang, Y.
Exploring the binding mechanisms of diaminopimelic acid analogs to meso-diaminopimelate dehydrogenase by molecular modeling
J. Mol. Graph. Model.
83
100-111
2018
Porphyromonas gingivalis (Q7MW40), Porphyromonas gingivalis W83 (Q7MW40)
Manually annotated by BRENDA team
Wu, W.; Zhang, Y.; Liu, D.; Chen, Z.
Efficient mining of natural NADH-utilizing dehydrogenases enables systematic cofactor engineering of lysine synthesis pathway of Corynebacterium glutamicum
Metab. Eng.
52
77-86
2019
Pseudothermotoga thermarum (F7YTT4), Pseudothermotoga thermarum, Pseudothermotoga thermarum DSM 5069 (F7YTT4)
Manually annotated by BRENDA team
Akita, H.; Nakamichi, Y.; Morita, T.; Matsushika, A.
Identification and functional characterization of NAD(P)+ -dependent meso-diaminopimelate dehydrogenase from Numidum massiliense
MicrobiologyOpen
9
e1059
2020
Numidum massiliense
Manually annotated by BRENDA team
Xu, J.Z.; Ruan, H.Z.; Liu, L.M.; Wang, L.P.; Zhang, W.G.
Overexpression of thermostable meso-diaminopimelate dehydrogenase to redirect diaminopimelate pathway for increasing L-lysine production in Escherichia coli
Sci. Rep.
9
2423
2019
Acetivibrio thermocellus (A3DDX7), Ureibacillus thermosphaericus (G1UII1), Corynebacterium glutamicum (P04964), Bacteroides fragilis (Q64PZ8), Symbiobacterium thermophilum (Q67PI3), Lysinibacillus sphaericus (Q9KWR0), Bacteroides fragilis YCH46 (Q64PZ8), Corynebacterium glutamicum ATCC 13032 (P04964), Acetivibrio thermocellus ATCC 27405 (A3DDX7)
Manually annotated by BRENDA team