Any feedback?
Please rate this page
(enzyme.php)
(0/150)

BRENDA support

BRENDA Home
show all | hide all No of entries

Information on EC 1.2.1.13 - glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) and Organism(s) Spinacia oleracea and UniProt Accession P19866

for references in articles please use BRENDA:EC1.2.1.13
Please wait a moment until all data is loaded. This message will disappear when all data is loaded.
EC Tree
Specify your search results
Select one or more organisms in this record: ?
This record set is specific for:
Spinacia oleracea
UNIPROT: P19866 not found.
Show additional data
Do not include text mining results
Include (text mining) results
Include results (AMENDA + additional results, but less precise)
Word Map
The taxonomic range for the selected organisms is: Spinacia oleracea
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria, Archaea
Synonyms
glyceraldehyde-3-p dehydrogenase, nadp-glyceraldehyde-3-phosphate dehydrogenase, gapa1, nadp-gapdh, gapa-1, nadp-gpd, glyceraldehyde-3-dehydrogenase, photosynthetic gapdh, ov-gapdh, nadp-dependent gapdh, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A2B2-GAPDH
fully active enzyme
A2B2-glyceraldehyde-3-phosphate dehydrogenase
-
D-glyceraldehyde-3-phosphate dehydrogenase
-
glyceraldehyde-3-phosphate dehydrogenase (NADP+)
-
dehydrogenase, glyceraldehyde phosphate (nicotinamide adenine dinucleotide phosphate phosphorylating)
-
-
-
-
GAPDH
glyceraldehyde 3-phosphate dehydrogenase (NADP)
-
-
-
-
glyceraldehyde phosphate dehydrogenase (nicotinamide adenine dinucleotide phosphate phosphorylating)
-
-
-
-
glyceraldehyde-3-phosphate dehydrogenase
-
-
glyceraldehyde-P dehydrogenase
-
-
-
-
NAD(P)-GAPDH
-
-
-
-
NADP+-dependent G-3-P dehydrogenase
-
-
-
-
NADP-dependent glyceraldehyde phosphate dehydrogenase
-
-
-
-
NADP-dependent glyceraldehydephosphate dehydrogenase
-
-
-
-
NADP-glyceraldehyde phosphate dehydrogenase
-
-
-
-
NADP-glyceraldehyde-3-phosphate dehydrogenase
-
-
-
-
NADP-GPD
-
-
-
-
NADP-triose phosphate dehydrogenase
-
-
-
-
NADPH-D-GA3P
-
-
-
-
triosephosphate dehydrogenase (NADP+)
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
-
oxidation
reduction
SYSTEMATIC NAME
IUBMB Comments
D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase (phosphorylating)
-
CAS REGISTRY NUMBER
COMMENTARY hide
37250-87-6
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
3-phospho-D-glyceroyl phosphate + NADH
D-glyceraldehyde 3-phosphate + phosphate + NAD+
show the reaction diagram
-
-
-
?
3-phospho-D-glyceroyl phosphate + NADPH
D-glyceraldehyde 3-phosphate + phosphate + NADP+
show the reaction diagram
-
-
-
?
D-glyceraldehyde 3-phosphate + phosphate + NADP+
3-phospho-D-glyceroyl phosphate + NADPH + H+
show the reaction diagram
3-phospho-D-glyceroyl phosphate + NADPH
D-glyceraldehyde 3-phosphate + phosphate + NADP+
show the reaction diagram
3-phospho-D-glyceroyl phosphate + NADPH + H+
D-glyceraldehyde 3-phosphate + phosphate + NADP+
show the reaction diagram
-
-
-
-
?
D-glyceraldehyde 3-phosphate + phosphate + NAD+
3-phospho-D-glyceroyl phosphate + NADH
show the reaction diagram
D-glyceraldehyde 3-phosphate + phosphate + NADP+
3-phospho-D-glyceroyl phosphate + NADPH
show the reaction diagram
additional information
?
-
-
-
-
-
?
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
D-glyceraldehyde 3-phosphate + phosphate + NADP+
3-phospho-D-glyceroyl phosphate + NADPH + H+
show the reaction diagram
-
-
-
?
3-phospho-D-glyceroyl phosphate + NADPH
D-glyceraldehyde 3-phosphate + phosphate + NADP+
show the reaction diagram
3-phospho-D-glyceroyl phosphate + NADPH + H+
D-glyceraldehyde 3-phosphate + phosphate + NADP+
show the reaction diagram
-
-
-
-
?
additional information
?
-
-
-
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NAD+
does also accept NAD+ but to a lower degree than NADP+
NADH
the residues Thr33 and Ser188 are involved in NADPH over NADH selectivity
NADP+
preferred cofactor
NADPH
NADP+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
cystamine
-
inhibitory when the enzyme is activated by effectors
iodoacetate
-
preincubation with glyceraldehyde-phosphate, 10fold molar excess over iodoacetate, prevents inactivation
sulfite
-
non-competitive inhibitor with respect to both NADPH and 3-phosphoglycerate
thioredoxin
-
a regulatory disulfide between Cys359 and Cys358 of the C-terminal extension of GapB does form in presence of oxidized thioredoxin. This covalent modification is required for the NAD+-dependent association into higher oligomers and inhibition of the NADPH-dependent activity
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1,3-diphosphoglycerate
Br-
-
0.6 M, maximal stimulation
Cl-
-
1.0 M, maximal stimulation
Cl3CCOO-
-
0.24 M, maximal stimulation
ClO4-
-
0.08 M, maximal stimulation
dithiothreitol
glycerate 1,3-bisphosphate
-
most effective on a molar basis in stimulating NADPH-activity of dark chloroplast extracts and purified enzyme
I-
-
0.35 M, maximal stimulation
NADP+
NADPH
phosphate
-
stimulates
SCN-
-
0.05 M, maximal stimulation
thioredoxin
-
enzyme is activated by thioredoxin that is reduced either photochemically with ferredoxin and ferredoxin-thioredoxin reductase or chemically with dithiothreitol
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.01 - 0.018
3-phospho-D-glyceroyl phosphate
0.14 - 0.184
NADH
0.029 - 0.05
NADPH
0.012 - 0.031
3-phospho-D-glyceroyl phosphate
0.29
NADH
-
with NADH as coenzyme, activation by 20 mM dithiothreitol and 0.021 mM 1,3-bisphosphoglycerate
0.019 - 0.078
NADPH
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
32 - 48
NADH
32 - 61
NADPH
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
13.92
-
NAD+-dependent activity
15.4
-
NADP+-dependent activity
additional information
-
-
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.9
-
activity assay
8 - 8.8
-
both directions
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
-
activity assay
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
G3PA_SPIOL
401
0
43023
Swiss-Prot
Chloroplast (Reliability: 5)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
132000
-
GapA, estimated by gel filtration
15000
-
GAPDH III, gel filtration
151000
-
B(minCTE) mutant, estimated by gel filtration
189000
-
tetrameric conformation of GAPDH-A2B2 stabilized by NADPH, estimated by gel filtration
232000
-
GapB mutant B(E326Q) in the presence of NADPH, estimated by gel filtration
243000
-
wild-type GapB, tetramer in the presence of NADPH, estimated by gel filtration
247000
-
GapB mutant B(S188A) in the presence of NADPH, estimated by gel filtration
270000
-
A(plusCTE) mutant, tetramer in the presence of NADPH, estimated by gel filtration
278000
-
GapB mutant B(R77A) in the presence of NADPH, estimated by gel filtration
300000
-
GAPDH II, gel filtration
36225
-
x * 39355, subunit A, + x * 36225, subunit B, calculation from amino acid sequence
37000
38000
39355
-
x * 39355, subunit A, + x * 36225, subunit B, calculation from amino acid sequence
40000
-
A2B2, 2 * 38000 + 2 * 40000, isoenzyme I, SDS-PAGE
43000
491000
-
wild-type GapB in the presence of NADH, compatible with octameric structure, estimated by gel filtration
520000
553000
-
GapB mutant B(S188A) in the presence of NADH, compatible with octameric structure, estimated by gel filtration
600000
760000
-
oligomer of GAPDH in the presence of NADH, suggesting A8B8 stoichiometry, estimated by gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
heteromer
AB isoform
heterotetramer
fully active enzyme
homotetramer
A4 isoform
tetramer
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging-drop vapour-diffusion method is used to grow crystals of recombinant A4-GAPDH, T33A and S188A A4-GAPDH mutants complexed with NADP+
molecular docking of ferredoxin-NADP-reductase EC 1.18.1.2 and GAPD. enzymes are able to form at least two different complexes, one involving a single GAPD monomer and an ferredoxin-NADP-reductase monomer or dimer. The amino acid residues located at the putative interface are highly conserved on the chloroplastic forms of both enzymes. The other potential complex involves the GAPD A2B2 tetramer and an FNR monomer or dimer. Ferredoxin is able to interact with FNR in either complex
sitting drop vapour diffusion method with 2.0-2.5 M or 1.5-1.2 M ammonium sulfate and 0.1 M potassium phosphate (pH 7.0-8.0)
two crystal forms of the A4-GAPDH isoform are used to solve the structure of the apo form to a resolution of 3.0 A
crystal structure of the non-regulatory A(4) isoform of glyceraldehyde-3-phosphate dehydrogenase complexed with NADP+
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D351N
the mutation only marginally affects the redox sensitivity
E356Q
the mutation only marginally affects the redox sensitivity
E356Q/E357Q
complete redox insensitivity is achieved in the double mutant
E357Q
the mutation only marginally affects the redox sensitivity
S188A
affinity for NADPH is significantly decreased, decrease in the ratio of turnover number to Km-value in the NADPH-dependent reaction, significant expansion of the A4-tetramer
T33A
affinity for NADPH is significantly decreased, turnover-number for NADPH is lowered
T33A/S188A
affinity for NADPH is significantly decreased, turnover-number for NADPH is lowered
A(plusCTE)
-
chimeric mutant for testing the regulatory function of CTE
B(E326Q)
-
site specific mutant of the GAPDH B-subunit
B(minCTE)
-
deletion mutant for testing the regulatory function of CTE
B(R77A)
-
site specific mutant of the GAPDH B-subunit
B(S188A)
-
site specific mutant of the GAPDH B-subunit
C18S
-
mutant of GapB subunit still shows stron redox regulation
C274S
-
mutant of GapB subunit still shows stron redox regulation
C285S
-
mutant of GapB subunit still shows stron redox regulation
C349S
-
mutant of GapB subunit is less redox-sensitive than GapB. Active tetramer, unable to aggregate to higher oligomers in presence of NAD+
C349S/C358S
-
mutant of GapB subunit is less redox-sensitive than GapB. Active tetramer, unable to aggregate to higher oligomers in presence of NAD+
c358S
-
mutant of GapB subunit is less redox-sensitive than GapB. Active tetramer, unable to aggregate to higher oligomers in presence of NAD+
OXIDATION STABILITY
ORGANISM
UNIPROT
LITERATURE
oxidation typically leads to about 50% inhibition of the NADPH-dependent activity
689747
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
4°C, GAPDH I is stable for several months, GAPDH II and GAPDH III spontaneously lose activity
-
4°C, pH 8.5, protein concentration 2.5 mg/ml, apoprotein, complete loss of activity after 48 h
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
native and recombinant enzyme
purified from spinach leaves
2 isoenzymes: 1 and 2
-
3 enzyme forms: GAPDH I, GAPDH II, GAPDH III
-
using a Q-Sepharose HP and a MonoQ anion-exchange column
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
expression in Escherichia coli BL21
into the pET29 vector for expression in Escherichia coli BL21DE3 cells
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Wolosiuk, R.A.; Stein, M.
Modulation of spinach chloroplast NADP-glyceraldehyde-3-phosphate dehydrogenase by chaotropic anions
Arch. Biochem. Biophys.
279
70-77
1990
Spinacia oleracea
Manually annotated by BRENDA team
Ferri, G.; Stoppini, M.; Meloni, M.L.; Zapponi, M.C.; Iadarola, P.
Chloroplast glyceraldehyde-3-phosphate dehydrogenase (NADP): amino acid sequence of the subunits from isoenzyme I and structural relationship with isoenzyme II
Biochim. Biophys. Acta
1041
36-42
1990
Spinacia oleracea
Manually annotated by BRENDA team
Levy, L.M.; Betts, G.F
Stereospecificity of C4 nicotinamide hydrogen transfer of the NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
Biochim. Biophys. Acta
997
331-333
1989
Spinacia oleracea
Manually annotated by BRENDA team
Ferri, G.; Stoppini, M.; Iadarola, P.; Zapponi, M.C.; Galliano, M.; Minchiotti, L.
Structural characterization of the subunit of spinach chloroplast glyceraldehyde-3-phosphate dehydrogenase (NADP)
Biochim. Biophys. Acta
915
149-156
1987
Spinacia oleracea
-
Manually annotated by BRENDA team
Iadarola, P.; Bonferoni, C.; Ferri, G.; Stoppini, M.; Zapponi, M.C.
Reversed-phase high-performance liquid chromatographic separation and partial structural characterization of chloroplast glyceraldehyde-3-phosphate dehydrogenase
J. Chromatogr.
359
423-432
1986
Spinacia oleracea
-
Manually annotated by BRENDA team
Wolosiuk, R.A.; Hertig, C.M.; Busconi, L.
Activation of spinach chloroplast NADP-linked glyceraldehyde-3-phosphate dehydrogenase by concerted hysteresis
Arch. Biochem. Biophys.
246
1-8
1986
Spinacia oleracea
Manually annotated by BRENDA team
Ripamonti, F.S.; Sabatino, P.; Zanotti, G.; Scagliarini, S.; Sparla, F.; Trost, P.
Crystal structure of the non-regulatory A(4) isoform of spinach chloroplast glyceraldehyde-3-phosphate dehydrogenase complexed with NADP+
J. Mol. Biol.
314
527-542
2001
Spinacia oleracea
Manually annotated by BRENDA team
Wolosiuk, R.A.; Corley, E.; Crawford, N.A.; Buchanan, B.B.
Dual effects of organic solvents on chloroplast phosphoribulokinase
FEBS Lett.
189
212-216
1985
Spinacia oleracea
-
Manually annotated by BRENDA team
Iadarola, P.; Zapponi, M.C.; Ferri, G.
Molecular forms of chloroplast glyceraldehyde-3-P-dehydrogenase
Experientia
39
50-52
1983
Spinacia oleracea
-
Manually annotated by BRENDA team
Zapponi, M.C.; Berni, R.; Iadarola, P.; Ferri, G.
Spinach chloroplast glyceraldehyde-3-phosphate dehydrogenase (NADP). Formation of complexes with coenzymes and substrates
Biochim. Biophys. Acta
744
260-264
1983
Spinacia oleracea
-
Manually annotated by BRENDA team
Cerff, R.
Quaternary structure of higher plant glyceraldehyde-3-phosphate dehydrogenases
Eur. J. Biochem.
94
243-247
1979
Hordeum vulgare, Pisum sativum, Spinacia oleracea
Manually annotated by BRENDA team
Wolosiuk, R.A.; Buchanan, B.B.
Activation of chloroplast NADP-linked glyceraldehyde-3-phosphate dehydrogenase by ferredoxin/thioredoxin system
Plant Physiol.
61
669-671
1978
Spinacia oleracea
Manually annotated by BRENDA team
Ferri, G.; Comerio, G.; Iadarola, P.; Zapponi, M.C.; Speranza, M.L.
Subunit structure and activity of glyceraldehyde-3-phosphate dehydrogenase from spinach chloroplasts
Biochim. Biophys. Acta
522
19-31
1978
Spinacia oleracea
Manually annotated by BRENDA team
Ziegler, I.; Marewa, A.; Schoepe, E.
Action of sulphite on the substrate kinetics of chloroplastic NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
Phytochemistry
15
1627-1632
1976
Spinacia oleracea
-
Manually annotated by BRENDA team
Yonuschot, G.R.; Ortwerth, B.J.; Koeppe, O.J.
Purification and properties of a nicotinamide adenine dinucleotide phosphate-requiring glyceraldehyde 3-phosphate dehydrogenase from spinach leaves
J. Biol. Chem.
245
4193-4198
1970
Spinacia oleracea
Manually annotated by BRENDA team
Trost, P.; Scagliarini, S.; Valenti, V.; Pupillo, P.
Activation of spinach chloroplast glyceraldehyde 3-phosphate dehydrogenase: effect of glycerate 1,3-bisphosphate
Planta
190
320-326
1993
Spinacia oleracea
-
Manually annotated by BRENDA team
Scagliarini, S.; Trost, P.; Pupillo, P.; Valenti, V.
Light activation and molecular-mass changes of NAD(P)-glyceraldehyde 3-phosphate dehydrogenase of spinach and maize leaves
Planta
190
313-319
1993
Spinacia oleracea, Zea mays
-
Manually annotated by BRENDA team
Baalmann, E.; Backhausen, J.E.; Rak, C.; Vetter, S.; Scheibe, R.
Reductive modification and nonreductive activation of purified spinach chloroplast NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
Arch. Biochem. Biophys.
324
201-208
1995
Spinacia oleracea
Manually annotated by BRENDA team
Wolosiuk, R.A.; Buchanan, B.B.
Studies on the regulation of chloroplast NADP-linked glyceraldehyde-3-phosphate dehydrogenase
J. Biol. Chem.
251
6456-6461
1976
Spinacia oleracea
Manually annotated by BRENDA team
Sparla, F.; Pupillo, P.; Trost, P.
The C-terminal extension of glyceraldehyde-3-phosphate dehydrogenase subunit B acts as an autoinhibitory domain regulated by thioredoxins and nicotinamide adenine dinucleotide
J. Biol. Chem.
277
44946-44952
2002
Spinacia oleracea
Manually annotated by BRENDA team
Sparla, F.; Fermani, S.; Falini, G.; Zaffagnini, M.; Ripamonti, A.; Sabatino, P.; Pupillo, P.; Trost, P.
Coenzyme site-directed mutants of photosynthetic A4-GAPDH show selectively reduced NADPH-dependent catalysis, similar to regulatory AB-GAPDH inhibited by oxidized thioredoxin
J. Mol. Biol.
340
1025-1037
2004
Spinacia oleracea (P19866)
Manually annotated by BRENDA team
Camara-Artigas, A.; Hirasawa, M.; Knaff, D.B.; Wang, M.; Allen, J.P.
Crystallization and structural analysis of GADPH from Spinacia oleracea in a new form
Acta Crystallogr. Sect. F
62
1087-1092
2006
Spinacia oleracea (P19866)
Manually annotated by BRENDA team
Sparla, F.; Zaffagnini, M.; Wedel, N.; Scheibe, R.; Pupillo, P.; Trost, P.
Regulation of photosynthetic GAPDH dissected by mutants
Plant Physiol.
138
2210-2219
2005
Spinacia oleracea
Manually annotated by BRENDA team
Negi, S.S.; Carol, A.A.; Pandya, S.; Braun, W.; Anderson, L.E.
Co-localization of glyceraldehyde-3-phosphate dehydrogenase with ferredoxin-NADP reductase in pea leaf chloroplasts
J. Struct. Biol.
161
18-30
2008
Pisum sativum, Spinacia oleracea (P19866), Spinacia oleracea
Manually annotated by BRENDA team
Fermani, S.; Sparla, F.; Falini, G.; Martelli, P.L.; Casadio, R.; Pupillo, P.; Ripamonti, A.; Trost, P.
Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase
Proc. Natl. Acad. Sci. USA
104
11109-11114
2007
Spinacia oleracea (P19866), Spinacia oleracea
Manually annotated by BRENDA team