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Information on EC 1.17.9.1 - 4-methylphenol dehydrogenase (hydroxylating) and Organism(s) Pseudomonas putida and UniProt Accession P09788

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IUBMB Comments
This bacterial enzyme contains a flavin (FAD) subunit and a cytochrome c subunit. The flavin subunit abstracts two hydrogen atoms from the substrate, forming a quinone methide intermediate, then hydrates the latter at the benzylic carbon with a hydroxyl group derived from water. The protons are lost to the bulk solvent, while the electrons are passed to the heme on the cytochrome subunit, and from there to azurin, a small copper-binding protein that is co-localized with the enzyme in the periplasm. The first hydroxylation forms 4-hydroxybenzyl alcohol; a second hydroxylation converts this into 4-hydroxybenzaldehyde.
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Pseudomonas putida
UNIPROT: P09788
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Word Map
The taxonomic range for the selected organisms is: Pseudomonas putida
The enzyme appears in selected viruses and cellular organisms
Reaction Schemes
hide(Overall reactions are displayed. Show all >>)
Synonyms
p-cresol methylhydroxylase, p-cresol methylhydroxylase a, para-cresol methylhydroxylase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
p-cresol methylhydroxylase
p-cresol methylhydroxylase A
-
2 enzyme forms with various MW and Km are formed during growth on 3,5-xylenol - hydroxylase A - and 4-cresol - hydroxylase B
p-cresol methylhydroxylase B
-
2 enzyme forms with various MW and Km are formed during growth on 3,5-xylenol - formation of hydroxylase A - and on 4-cresol - formation of hydroxylase B
p-cresol-(acceptor) oxidoreductase (hydroxylating)
-
-
-
-
additional information
-
consists of a c-type cytochrome subunit PchC and two flavoprotein subunits PchF
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
4-methylphenol + 4 oxidized azurin + H2O = 4-hydroxybenzaldehyde + 4 reduced azurin + 4 H+
show the reaction diagram
mechanism
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
-
oxidation
-
-
-
-
reduction
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
4-methylphenol:oxidized azurin oxidoreductase (methyl-hydroxylating)
This bacterial enzyme contains a flavin (FAD) subunit and a cytochrome c subunit. The flavin subunit abstracts two hydrogen atoms from the substrate, forming a quinone methide intermediate, then hydrates the latter at the benzylic carbon with a hydroxyl group derived from water. The protons are lost to the bulk solvent, while the electrons are passed to the heme on the cytochrome subunit, and from there to azurin, a small copper-binding protein that is co-localized with the enzyme in the periplasm. The first hydroxylation forms 4-hydroxybenzyl alcohol; a second hydroxylation converts this into 4-hydroxybenzaldehyde.
CAS REGISTRY NUMBER
COMMENTARY hide
66772-07-4
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
4-cresol + acceptor + H2O
4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
(RS)-1-(4-hydroxyphenyl)ethanol + acceptor + H2O
?
show the reaction diagram
-
-
-
-
?
1,4-hydroxyquinone + acceptor + H2O
?
show the reaction diagram
-
-
-
-
?
2,4-xylenol + acceptor + H2O
3-methyl-4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
2,4-xylenol + acceptor + H2O
4-hydroxy-3-methylbenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
2,4-xylenol + phenazine methosulfate + H2O
4-hydroxy-3-methylbenzaldehyde + reduced phenazine methosulfate + H+
show the reaction diagram
-
-
-
-
?
2-bromo-4-methylphenol + acceptor + H2O
3-bromo-4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
2-methoxy-4-methylphenol + acceptor + H2O
3-methoxy-4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
3,4-dimethylphenol + acceptor + H2O
2-methyl-4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
3-fluoro-4-methylphenol + acceptor + H2O
2-fluoro-4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
4-cresol + acceptor + H2O
4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
4-cresol + azurin + H2O
4-hydroxybenzaldehyde + reduced azurin
show the reaction diagram
-
azurin is the physiological acceptor
-
-
?
4-cresol + phenazine methosulfate + H2O
4-hydroxybenzyl alcohol + reduced phenazine methosulfate
show the reaction diagram
-
-
-
-
?
4-ethylphenol + acceptor + H2O
1-(4'-hydroxyphenyl)ethanol + reduced acceptor
show the reaction diagram
4-hydroxybenzyl alcohol + acceptor
4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
4-isopropylphenol + acceptor + H2O
?
show the reaction diagram
-
-
-
-
?
4-methyl-1-naphthol + acceptor + H2O
?
show the reaction diagram
-
-
-
-
?
4-methyl-3-nitrophenol + acceptor + H2O
2-nitro-4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
4-methylcatechol + acceptor + H2O
3,4-dihydroxybenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
4-methylphenol + acceptor + H2O
4-hydroxybenzaldehyde + reduced acceptor + H+
show the reaction diagram
-
-
-
-
?
4-methylphenol + phenazine methosulfate + H2O
4-hydroxybenzaldehyde + reduced phenazine methosulfate + H+
show the reaction diagram
-
-
-
-
?
4-n-propylphenol + acceptor + H2O
?
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
4-cresol + acceptor + H2O
4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
via intermediate 4-hydroxybenzylalcohol, degradation of toxic 4-cresol
-
-
?
2,4-xylenol + acceptor + H2O
4-hydroxy-3-methylbenzaldehyde + reduced acceptor
show the reaction diagram
-
-
-
-
?
4-cresol + acceptor + H2O
4-hydroxybenzaldehyde + reduced acceptor
show the reaction diagram
4-cresol + azurin + H2O
4-hydroxybenzaldehyde + reduced azurin
show the reaction diagram
-
azurin is the physiological acceptor
-
-
?
4-methylphenol + acceptor + H2O
4-hydroxybenzaldehyde + reduced acceptor + H+
show the reaction diagram
-
-
-
-
?
additional information
?
-
-
hydroxylase A is plasmid encoded and is produced constitutively, as long as the plasmid is maintained by growth on 3,5-xylenol. Hydroxylase B is induced by growth on 4-cresol
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2'-deoxy-FAD
-
strong binding but significantly reduced activity
8alpha-O-tyrosyl-FAD
-
the covalently bound flavin is 8alpha-O-tyrosyl-FAD
cytochrome c
heme
-
wild type enzyme and recombinant enzyme contains covalently bound heme
additional information
-
only traces of activity with 6-Br-FAD, iso-FAD, 5-deaza-FAD, 6-amino-FAD, or 6-hydroxy-FAD as cofactor
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
copper
-
contains one copper atom per molecule
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0173
2,4-Xylenol
-
-
0.072
3,4-xylenol
-
-
0.0036 - 0.016
4-Cresol
0.36
4-Ethylphenol
-
-
0.027 - 0.0476
4-Hydroxybenzyl alcohol
0.0264 - 6.76
phenazine methosulfate
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2.4 - 121
4-Cresol
additional information
additional information
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6.78
-
hydroxylase B
9.95
-
hydroxylase A
additional information
-
-
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
9
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
Uniprot
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
low activity
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
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using a gene-knockout it is shown that PCMH-encoding gene pchF is necessary for the catabolism of 2,4-xylenol
metabolism
-
the enzyme is necessary for 2,4-xylenol catabolism
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
DH4C_PSEPU
521
0
57945
Swiss-Prot
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
58700
alpha2beta2, 2 * 58700 + 2 * 9200, c-type cytochrome subunit PchC (beta) and two flavoprotein subunits PchF (alpha)
9200
alpha2beta2, 2 * 58700 + 2 * 9200, c-type cytochrome subunit PchC (beta) and two flavoprotein subunits PchF (alpha)
10000
-
alpha, beta, 2 * 58000 + 2 * 10000, c-type cytochrome subunit PchC (beta) and two flavoprotein subunits PchF (alpha)
100000
-
hydroxylase B, gel filtration
108000
-
hydroxylase A, gel filtration
114000
-
hydroxylase A, equilibrium sedimentation
115000
-
sedimentation equilibrium ultracentrifugation
14000
-
equilibrium sedimentation
48600
-
alpha2beta2, 2 * 8780 + 2 * 48600, 8780 Da cytochrome subunit and 48600 Da flavoprotein subunit, amino acid analysis
49000
-
alpha2,beta2, 2 * 8500 + 2 * 49000, 95000 Da cytochrome subunit and 49000 Da flavoprotein subunit, amino acid analysis
56000
58000
58700
-
alpha, beta, 2 * 58700 + 2 * 9200, c-type cytochrome subunit PchC (beta) and two flavoprotein subunits PchF (alpha)
59500
-
alpha, beta, 2 * 59500 + 2 * 9200, c-type cytochrome subunit PchC (beta) and two flavoprotein subunits PchF (alpha)
8500
-
alpha2,beta2, 2 * 8500 + 2 * 49000, 95000 Da cytochrome subunit and 49000 Da flavoprotein subunit, amino acid analysis
8780
-
alpha2beta2, 2 * 8780 + 2 * 48600, 8780 Da cytochrome subunit and 48600 Da flavoprotein subunit, amino acid analysis
99000
-
hydroxylase B, equilibrium sedimentation
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
tetramer
alpha2beta2, 2 * 58700 + 2 * 9200, c-type cytochrome subunit PchC (beta) and two flavoprotein subunits PchF (alpha)
dimer
tetramer
additional information
-
the subunit dissociation is strongly dependent on ionic strength in the oxidized form of the enzyme but not in the reduced form
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
native enzyme and alpha subunit, sitting drop vapor diffusion method
crystals prepared by free interface diffusion method in 8% polyethylene glycol 8000
-
X-ray crystal structure at 2.5 resolution
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
apo-PchF[Y384F]
-
the mutant Y384F of the flavoprotein subunit displays stoichiometric noncovalent FAD binding. The mutant flavoprotein subunit associates with the cytochrome subunit, although not as avidly as the wild-type flavoprotein subunit containing covalently bound FAD
R474K
-
reduced rate of FAD binding, strongly reduced activity
Y384F
-
strongly decreased activity
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-20°C, stable for a few days
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant enzyme
native and mutant enzymes from Escherichia coli
-
Ni-NTA column chromatography
-
recombinant enzyme from Escherichia coli
-
recombinant enzymes
-
recombinant protein
-
the 9200 Da c-type cytochrome subunit from Pseudomonas putida NCIMB 9869, overexpressed in recombinant form in Pseudomonas aeruginosa PAO1-LAC
-
using Ni-NTA-chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
expressed in Escherichia coli
-
expressed in Escherichia coli as a His-tagged fusion protein
-
expressed in Escherichia coli BL21(DE3)
-
expressed in Escherichia coli BL21(DE3) cells
-
expression in Escherichia coli JM109 and Pseudomonas putida RA4007
-
expression of the flavoprotein subunit with non-covalently attached FAD in Escherichia coli
-
overexpression of the flavoprotein in Escherichia coli
-
the 9200 Da c-type cytochrome subunit from Pseudomonas putida NCIMB 9869 is overexpressed in recombinant form in Pseudomonas aeruginosa PAO1-LAC. Efforts to produce the cytochrome in Escherichia coli using a pET vector, with or without its signal peptide, are unsuccessful, yielding relatively low levels of the protein
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Hopper, D.J.; Taylor, D.G.
The purification and properties of p-cresol-(acceptor) oxidoreductase (hydroxylating), a flavocytochrome from Pseudomonas putida
Biochem. J.
167
155-162
1977
Pseudomonas putida
Manually annotated by BRENDA team
Hopper, D.J.
Incorporation of [18O]water in the formation of p-hydroxybenzyl alcohol by the p-cresol methylhydroxylase from Pseudomonas putida
Biochem. J.
175
345-347
1978
Pseudomonas putida
Manually annotated by BRENDA team
McIntire, W.; Edmondson, D.E.; Singer, T.P.; Hopper, D.J.
8 alpha-O-Tyrosyl-FAD: a new form of covalently bound flavin from p-cresol methylhydroxylase
J. Biol. Chem.
255
6553-6555
1980
Pseudomonas putida
Manually annotated by BRENDA team
McIntire, W.; Edmondson, D.E.; Hopper, D.J.; Singer, T.P.
8 alpha-(O-Tyrosyl)flavin adenine dinucleotide, the prosthetic group of bacterial p-cresol methylhydroxylase
Biochemistry
20
3068-3075
1981
Pseudomonas putida
Manually annotated by BRENDA team
Hopper, D.J.
Redox potential of the cytochrome c in the flavocytochrome p-cresol methylhydroxylase
FEBS Lett.
161
100-102
1983
Comamonas testosteroni, Comamonas testosteroni NCIB 8955, Pseudomonas alcaligenes, Pseudomonas alcaligenes NCIB 9867, Pseudomonas putida, Pseudomonas putida NCIB 9866, Pseudomonas putida NCIB 9869
Manually annotated by BRENDA team
Causer, M.J.; Hopper, D.J.; McIntire, W.S.; Singer, T.P.
Azurin from Pseudomonas putida: an electron acceptor for p-cresol methylhydroxylase
Biochem. Soc. Trans.
12
1131-1132
1984
Pseudomonas putida, Pseudomonas putida NCIB 9869
-
Manually annotated by BRENDA team
McIntire, W.; Hopper, D.J.; Craig, J.C.; Everhart, E.T.; Webster, R.V.; Causer, M.J.; Singer, T.P.
Stereochemistry of 1-(4-hydroxyphenyl)ethanol produced by hydroxylation of 4-ethylphenol by p-cresol methylhydroxylase
Biochem. J.
224
617-621
1984
Pseudomonas putida
Manually annotated by BRENDA team
Hopper, D.J.; Jones, M.R.; Causer, M.J.
Periplasmic location of p-cresol methylhydroxylase in Pseudomonas putida
FEBS Lett.
182
485-488
1985
Pseudomonas putida
Manually annotated by BRENDA team
Bhattacharyya, A.; Tollin, G.; McIntire, W.; Singer, T.P.
Laser-flash-photolysis studies of p-cresol methylhydroxylase. Electron-transfer properties of the flavin and haem components
Biochem. J.
228
337-345
1985
Pseudomonas putida
Manually annotated by BRENDA team
Shamala, N.; Lim, L.W.; Mathews, F.S.
Preliminary X-ray study of p-cresol methylhydroxylase (flavocytochrome c) from Pseudomonas putida N.C.I.B. 9869
J. Mol. Biol.
183
517-518
1985
Pseudomonas putida
Manually annotated by BRENDA team
McIntire, W.; Hopper, D.J.; Singer, T.P.
p-Cresol methylhydroxylase. assay and general properties
Biochem. J.
228
325-335
1985
Pseudomonas putida
Manually annotated by BRENDA team
Koerber, S.C.; McIntire, W.; Bohmont, C.; Singer, T.P.
Resolution of the flavocytochrome p-cresol methylhydroxylase into subunits and reconstitution of the enzyme
Biochemistry
24
5276-5280
1985
Pseudomonas putida
Manually annotated by BRENDA team
Kim, J.; Fuller, J.H.; Cecchini, G.; McIntire, W.S.
Cloning, sequencing, and expression of the structural genes for the cytochrome and flavoprotein subunits of p-cresol methylhydroxylase from two strains of Pseudomonas putida
J. Bacteriol.
176
6349-6361
1994
Pseudomonas putida, Pseudomonas putida NCIB 9866, Pseudomonas putida NCIB 9869
Manually annotated by BRENDA team
Shamala, N.; Lim, L.W.; Mathews, F.S.; McIntire, W.; Singer, T.P.; Hopper, D.J.
Structure of an intermolecular electron-transfer complex: p-cresol methylhydroxylase at 6.0-A resolution
Proc. Natl. Acad. Sci. USA
83
4626-4630
1986
Pseudomonas putida
Manually annotated by BRENDA team
McIntire, W.; Singer, T.P.; Smith, A.J.; Mathews, F.S.
Amino acid and sequence analysis of the cytochrome and flavoprotein subunits of p-cresol methylhydroxylase
Biochemistry
25
5975-5981
1986
Pseudomonas putida
Manually annotated by BRENDA team
McIntire, W.S.; Hopper, D.J.; Singer, T.P.
Steady-state and stopped-flow kinetic measurements of the primary deuterium isotope effect in the reaction catalyzed by p-cresol methylhydroxylase
Biochemistry
26
4107-4117
1987
Pseudomonas putida, Pseudomonas putida NCIB 9869
Manually annotated by BRENDA team
Keat, M.J.; Hopper, D.J.
p-Cresol and 3,5-xylenol methylhydroxylases in Pseudomonas putida N.C.I.B. 9896
Biochem. J.
175
649-658
1978
Pseudomonas putida, Pseudomonas putida NCIB 9869
Manually annotated by BRENDA team
Cunane, L.M.; Chen, Z.W.; Shamala, N.; Mathews, F.S.; Cronin, C.N.; McIntire, W.S.
Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: Gated substrate entry and proton relays support the proposed catalytic mechanism
J. Mol. Biol.
295
357-374
2000
Pseudomonas putida
Manually annotated by BRENDA team
Engst, S.; Kuusk, V.; Efimov, I.; Cronin, C.N.; McIntire, W.S.
Properties of p-cresol methylhydroxylase flavoprotein overproduced by Escherichia coli
Biochemistry
38
16620-16628
1999
Pseudomonas putida
Manually annotated by BRENDA team
Kim, J.; Fuller, J.H.; Kuusk, V.; Cunane, L.; Chen, Z.; Mathews, F.S.; McIntire, W.S.
The cytochrome subunit is necessary for covalent FAD attachment to the flavoprotein subunit of p-cresol methylhydroxylase
J. Biol. Chem.
270
31202-31209
1995
Pseudomonas putida
Manually annotated by BRENDA team
Efimov, I.; Cronin, C.N.; McIntire, W.S.
Effects of noncovalent and covalent FAD binding on the redox and catalytic properties of p-cresol methylhydroxylase
Biochemistry
40
2155-2166
2001
Pseudomonas putida
Manually annotated by BRENDA team
Cronin, C.N.; McIntire, W.S.
Heterologous expression in Pseudomonas aeruginosa and purification of the 9.2-kDa c-type cytochrome subunit of p-cresol methylhydroxylase
Protein Expr. Purif.
19
74-83
2000
Pseudomonas putida
Manually annotated by BRENDA team
Efimov, I.; McIntire, W.S.
A study of the spectral and redox properties and covalent flavinylation of the flavoprotein component of p-cresol methylhydroxylase reconstituted with FAD analogues
Biochemistry
43
10532-10546
2004
Pseudomonas putida
Manually annotated by BRENDA team
Efimov, I.; Cronin, C.N.; Bergmann, D.J.; Kuusk, V.; McIntire, W.S.
Insight into covalent flavinylation and catalysis from redox, spectral, and kinetic analyses of the R474K mutant of the flavoprotein subunit of p-cresol methylhydroxylase
Biochemistry
43
6138-6148
2004
Pseudomonas putida, Pseudomonas putida NCIMB 9869
Manually annotated by BRENDA team
Cunane, L.M.; Chen, Z.W.; McIntire, W.S.; Mathews, F.S.
p-Cresol methylhydroxylase: alteration of the structure of the flavoprotein subunit upon its binding to the cytochrome subunit
Biochemistry
44
2963-2973
2005
Pseudomonas putida (P09788)
Manually annotated by BRENDA team
Efimov, I.; McIntire, W.S.
Relationship between charge-transfer interactions, redox potentials, and catalysis for different forms of the flavoprotein component of p-cresol methylhydroxylase
J. Am. Chem. Soc.
127
732-741
2005
Pseudomonas putida
Manually annotated by BRENDA team
Chen, Y.F.; Chao, H.; Zhou, N.Y.
The catabolism of 2,4-xylenol and p-cresol share the enzymes for the oxidation of para-methyl group in Pseudomonas putida NCIMB 9866
Appl. Microbiol. Biotechnol.
98
1349-1356
2014
Pseudomonas putida
-
Manually annotated by BRENDA team
Chen, Y.; Chao, H.; Zhou, N.
The catabolism of 2,4-xylenol and p-cresol share the enzymes for the oxidation of para-methyl group in Pseudomonas putida NCIMB 9866
Appl. Microbiol. Biotechnol.
98
1349-1356
2014
Pseudomonas putida, Pseudomonas putida NCIMB 9866
Manually annotated by BRENDA team