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Information on EC 1.14.13.2 - 4-hydroxybenzoate 3-monooxygenase and Organism(s) Pseudomonas aeruginosa and UniProt Accession P20586

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EC Tree
IUBMB Comments
A flavoprotein (FAD). Most enzymes from Pseudomonas are highly specific for NADPH (cf. EC 1.14.13.33 4-hydroxybenzoate 3-monooxygenase [NAD(P)H]).
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This record set is specific for:
Pseudomonas aeruginosa
UNIPROT: P20586
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Word Map
The taxonomic range for the selected organisms is: Pseudomonas aeruginosa
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
p-hydroxybenzoate hydroxylase, para-hydroxybenzoate hydroxylase, 4-hydroxybenzoate hydroxylase, 4-hydroxybenzoate 3-monooxygenase, 4-hydroxybenzoate 3-hydroxylase, m-hydroxybenzoate hydroxylase, 4-hba 3-monooxygenase, 4-hba 3-hydroxylase, phbad, 4hba 3-hydroxylase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4-hydroxybenzoate hydroxylase
-
NADPH-dependent 4-HBA hydroxylase
-
p-hydroxybenzoate hydroxylase
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4-HBA-3-hydroxylase
-
-
-
-
4-hydroxybenzoate 3-hydroxylase
-
-
-
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4-hydroxybenzoate 3-monooxygenase
-
-
-
-
4-hydroxybenzoate monooxygenase
-
-
-
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4-hydroxybenzoic hydroxylase
-
-
-
-
oxygenase, 4-hydroxybenzoate 3-mono-
-
-
-
-
p-hydroxybenzoate hydroxylase
p-hydroxybenzoate-3-hydroxylase
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-
-
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p-hydroxybenzoic acid hydrolase
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-
-
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p-hydroxybenzoic acid hydroxylase
-
-
-
-
p-hydroxybenzoic hydroxylase
-
-
-
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para-hydroxybenzoate hydroxylase
-
-
-
-
PHBAD
-
-
-
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PHBHase
-
-
-
-
POHBase
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
4-hydroxybenzoate + NADPH + H+ + O2 = 3,4-dihydroxybenzoate + NADP+ + H2O
show the reaction diagram
4-hydroxybenzoate + NADPH + H+ + O2 = 3,4-dihydroxybenzoate + NADP+ + H2O
show the reaction diagram
rate of formation of the flavin hydroperoxide is not influenced by pH-change. Rate of hydroxylation reaction increases with pH. The H-bond network abstracts the phenolic proton from p-hydroxybenzoate in the transition state of oxygen transfer. Product deprotonation enhances the rate of a specific conformational change required for both product relase and the elimination of water
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
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oxidation
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-
-
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reduction
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-
-
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SYSTEMATIC NAME
IUBMB Comments
4-hydroxybenzoate,NADPH:oxygen oxidoreductase (3-hydroxylating)
A flavoprotein (FAD). Most enzymes from Pseudomonas are highly specific for NADPH (cf. EC 1.14.13.33 4-hydroxybenzoate 3-monooxygenase [NAD(P)H]).
CAS REGISTRY NUMBER
COMMENTARY hide
9059-23-8
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
2,4-dihydroxybenzoate + NADPH + O2
2,3,4-trihydroxybenzoate + 2,4,5-trihydroxybenzoate + NADP+ + H2O
show the reaction diagram
-
-
?
3,4-dihydroxybenzoate + NADPH + H+ + O2
gallic acid + NADP+ + H2O
show the reaction diagram
4-hydroxybenzoate + NADPH + H+ + O2
3,4-dihydroxybenzoate + NADP+ + H2O
show the reaction diagram
-
-
-
?
4-hydroxybenzoate + NADPH + O2
protocatechuate + NADP+ + H2O
show the reaction diagram
-
-
-
?
3,4-dihydroxybenzoic acid + NADPH + H+ + O2
gallic acid + NADP+ + H2O
show the reaction diagram
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weak activity
-
-
?
4-hydroxybenzoate + NADPH + H+ + O2
protocatechuate + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
4-hydroxybenzoate + NADPH + O2
protocatechuate + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
4-mercaptobenzoate + NADPH + O2
4,4'-dithiobisbenzoate + ?
show the reaction diagram
-
-
-
-
?
additional information
?
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NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
4-hydroxybenzoate + NADPH + H+ + O2
3,4-dihydroxybenzoate + NADP+ + H2O
show the reaction diagram
-
-
-
?
4-hydroxybenzoate + NADPH + O2
protocatechuate + NADP+ + H2O
show the reaction diagram
-
-
-
?
4-hydroxybenzoate + NADPH + H+ + O2
protocatechuate + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
4-hydroxybenzoate + NADPH + O2
protocatechuate + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADPH
1-deaza-FAD
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when 1-deaza-FAD is used as cofactor, the enzyme carries out each step in catalysis except the transfer of oxygen to 4-hydroxybenzoate
6-Hydroxy-FAD
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when 6-hydroxy-FAD is used as cofactor, the enzyme has a lower turnover rate than the native enzyme
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
(-)-epigallocatechin-3-O-gallate
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non-competitive, binds to the enzyme in the proximity of the FAD binding site via formation of three hydrogen bonds
4-Aminosalicylate
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competitive
6-Aminonicotinate
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competitive
6-Hydroxynicotinate
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-
n-dodecyl gallate
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non-competitive
phosphate
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competitive inhibition
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
5-Hydroxypicolinate
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stimulates rapid oxidation of NADPH
additional information
-
the substrate analogue 5-hydroxypicolinate stimulates high rates of NADPH consumption by PHBH without the formation of an oxygenated product of 5-hydroxypicolinate
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KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.042 - 0.12
3,4-dihydroxybenzoate
0.022 - 0.12
4-hydroxybenzoate
0.15702 - 0.22802
3,4-dihydroxybenzoic acid
0.0109 - 0.04838
4-hydroxybenzoate
0.0232
NADPH
-
-
additional information
additional information
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TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.33 - 4.4
3,4-dihydroxybenzoate
0.45 - 8.9
4-hydroxybenzoate
0.39 - 1.69
3,4-dihydroxybenzoic acid
0.2 - 14.12
4-hydroxybenzoate
0.2 - 7.5
p-hydroxybenzoate
additional information
additional information
-
-
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kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
7.86 - 84.6
3,4-dihydroxybenzoate
20.45 - 228.2
4-hydroxybenzoate
2 - 12
3,4-dihydroxybenzoic acid
10 - 410
4-hydroxybenzoate
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.014
(-)-epigallocatechin-3-O-gallate
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-
0.0181
n-dodecyl gallate
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4.3
phosphate
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4°C, pH 6.8
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.26
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mutant enzyme Y385F, with 4-hydroxybenzoate as substrate, at pH 8.0 and 30°C
0.45
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mutant enzyme Y385F, with 3,4-dihydroxybenzoic acid as substrate, at pH 8.0 and 30°C
1.04
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mutant enzyme Y385F/T294A, with 4-hydroxybenzoate as substrate, at pH 8.0 and 30°C
1.86
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mutant enzyme Y385F/T294A, with 3,4-dihydroxybenzoic acid as substrate, at pH 8.0 and 30°C
16.85
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wild type enzyme, with 4-hydroxybenzoate as substrate, at pH 8.0 and 30°C
additional information
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pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8 - 8.1
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HEPES or Tris-SO42- buffer
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
replacement of Tyr385 with Phe forms a mutant, which enables the production of 3,4,5-trihydroxybenzonate (gallic acid) from 3,4-DOHB, although the catalytic activity of the mutant is quite low. The L199V/Y385F double mutant exhibits activity for producing gallic acid 4.3fold higher than that of the Y385F single mutant. This improvement in catalytic activity is primarily due to the suppression of a shunt reaction that wasts NADPH by producing H2O2, molecular mechanism underlying this higher catalytic activity, molecular dynamics simulations and quantum mechanics/molecular mechanics calculations, overview
metabolism
the NADPH-dependent 4-HBA hydroxylase from Pseudomonas aeruginosa (Pa PobA) natively catalyzes the first step in gallic acid biosynthesis
additional information
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
45000
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2 * 45000, SDS-PAGE
45100
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2 * 45100
75000
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gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion, hanging drops containing 4 mg/ml protein, 100 mM potassium phosphate, pH 7.0, 0.05 mM glutathione, 30 mM sodium sulfite, 0.02 mM FAD, 450 mM ammonium sulfate are equilibrated at 30°C for 7-10 days against a well solution of similar composition, but containing 900 mM ammonium sulfate, crystals of R220Q PHBH diffract to approx. 2.0 A
purifed enzyme mutant Y385F in complex with 3,4-dihydroxybenzoate, X-ray diffraction structure determination and analysis
crystal structure of mutant enzyme Y201F, Y385F, and N300D
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PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
H72N
disruption of proton-transfer network, kinetic analysis
L199A
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is unaltered compared to the wild-type enzyme
L199A/Y385F
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is slightly increased compared to the wild-type enzyme
L199D
site-directed mutagenesis, the mutant enzyme is inactive with 3,4-dihydroxybenzoate
L199D/Y385F
site-directed mutagenesis, the mutant enzyme is inactive with 3,4-dihydroxybenzoate
L199G
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is increased compared to the wild-type enzyme
L199G/Y385A
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is increased compared to the wild-type enzyme
L199G/Y385F
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is increased compared to the wild-type enzyme
L199H
site-directed mutagenesis, the mutant enzyme is almost inactive with 3,4-dihydroxybenzoate
L199K
site-directed mutagenesis, the mutant enzyme is almost inactive with 3,4-dihydroxybenzoate
L199R/T294C/Y385M
site-directed and random mutagenesis, mutant DA015, in the DA015 model, L199R supports Y201 and forms a new contact to the ligand 3-hydroxyl. Y385M makes space, no substitution occurs at V47, which maintains close hydrophobic packing against L199R, and T294C loosens the helix for increased flexibility and improved backbone hydrogen bonding to the 4-hydroxyl. The mutation orients 3,4-DHBA such that the 5-carbon is optimally exposed to FAD for hydroxylation
L199S
site-directed mutagenesis, the mutant enzyme is almost inactive with 3,4-dihydroxybenzoate
L199V
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is increased compared to the wild-type enzyme
L199V/Y385A
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is increased compared to the wild-type enzyme
L199V/Y385F
site-directed mutagenesis, the Y385F mutation facilitates the deprotonation of the 4-hydroxy group of 3,4-dihydroxybenzoate, which is necessary for initiating hydroxylation, and the L199V mutation in addition to the Y385F mutation allows the OH moiety in the peroxide group of C-(4a)-flavin hydroperoxide to come into the proximity of the C5 atom of 3,4-DOHB
L199V/Y385V
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is increased compared to the wild-type enzyme
R220Q
1% of wild-type activity, lower affinity to 4-hydroxybenzoate than wild-type
S212A
the turnover of the substrate 2,4-dihydroxybenzoate is 1.5-fold faster than the rate observed with the wild-type
V47I/L199N/T294A/Y385I
site-directed and random mutagenesis, mutant DA016, in the DA016 model, L199N forms interactions stabilizing S212 and to the ligand 3-hydroxyl. Y385I creates space, V47I braces L199N to minimize side-chain mobility, and T294A allows P293 to move closer to 3,4-DHBA. The mutation orients 3,4-DHBA such that the 5-carbon is optimally exposed to FAD for hydroxylation
Y385A
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is slightly increased compared to the wild-type enzyme
Y385F
site-directed mutagenesis, the Y385F mutation facilitates the deprotonation of the 4-hydroxy group of 3,4-dihydroxybenzoate, which is necessary for initiating hydroxylation
Y385S
site-directed mutagenesis, the mutant enzyme is inactive with 3,4-dihydroxybenzoate
Y385T
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is slightly reduced compared to the wild-type enzyme
Y385V
site-directed mutagenesis, the activity of the mutant with 3,4-dihydroxybenzoate is slightly reduced compared to the wild-type enzyme
K297M
N300D
P293S
-
mutation decreases the stability of the folded mutant protein compared to the wild-type PHBH
Y201F
Y385F
Y385F/T294A
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the mutant displays much higher activity toward 3,4-dihydroxybenzoic acid than the wild type enzyme
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
-
pH 5.5-8.5, stable
40
-
pH 8.0, stable
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
0°C-4°C, as a precipitate under a solution of 50 mM potassium phosphate and 0.5 mM EDTA, pH 6.5-7.0, with 70% saturated ammonium sulfate, idefinitely stable
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PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant PHBH
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CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in Escherichia coli, mutant enzyme S212A
gene pobA, construction and selection of PobA library, recombinant expression of wild-type and mutant enzymes in Escherichia coli strain BL21 (DE3)
expressed in Escherichia coli BL21 Star (DE3) cells
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expression in Escherichia coli
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expression of mutant enzymes Y201F and Y385F in Escherichia coli
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expression of wild-type and E49Q mutant PHPH in Escherichia coli
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mutant enzymes K297M, N300D and Y385F
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plasmid mutagenesis for high-level expression of 4-hydroxybenzoate hydroxylase
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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Entsch, B.
Hydroxybenzoate hydroxylase
Methods Enzymol.
188
138-147
1990
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Entsch, B.; Ballou, D.P.
Purification, properties, and oxygen reactivity of p-hydroxybenzoate hydroxylase from Pseudomonas aeruginosa [published erratum appears in Biochim Biophys Acta 1990 Mar 29;1038(1):139]
Biochim. Biophys. Acta
999
313-322
1989
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Moran, G.R.; Entsch, B.; Palfey, B.A.; Ballou, D.P.
Mechanistic insights into p-hydroxybenzoate hydroxylase from studies of the mutant Ser212Ala
Biochemistry
38
6292-6299
1999
Pseudomonas aeruginosa (P20586)
Manually annotated by BRENDA team
Abe, I.; Kashiwagi, K.; Noguchi, H.
Antioxidative galloyl esters as enzyme inhibitors of p-hydroxybenzoate hydroxylase
FEBS Lett.
483
131-134
2000
Pseudomonas aeruginosa, Pseudomonas fluorescens (P00438)
Manually annotated by BRENDA team
Lah, M.S.; Palfey, B.A.; Schreuder, H.A.; Ludwig, M.L.
Crystal structures of mutant Pseudomonas aeruginosa p-hydroxybenzoate hydroxylases: The Tyr201Phe, Tyr385Phe, and Asn300Asp variants
Biochemistry
33
1555-1564
1994
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Entsch, B.; Palfey, B.A.; Ballou, D.P.; Massey, V.
Catalytic function of tyrosine residues in para-hydroxybenzoate hydroxylase as determined by the study of site-directed mutants
J. Biol. Chem.
266
17341-17349
1991
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Palfey, B.A.; Entsch, B.; Ballou, D.P.; Massey, V.
Changes in the catalytic properties of p-hydroxybenzoate hydroxylase caused by the mutation Asn300Asp
Biochemistry
33
1545-1554
1994
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Moran, G.R.; Entsch, B.
Plasmid mutagenesis by PCR for high-level expression of para-hydroxybenzoate hydroxylase
Protein Expr. Purif.
6
164-168
1995
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Ortiz-Maldonado, M.; Gatti, D.; Ballou, D.P.; Massey, V.
Structure-function correlation of the reaction of reduced nicotinamide analogues with p-hydroxybenzoate hydroxylase substituted with a series of 8-substituted flavins
Biochemistry
38
16636-16647
1999
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Ortiz-Maldonado, M.; Aeschliman, S.M.; Ballou, D.P.; Masey, V.
Synergistic interactions of multiple mutations on catalysis during the hydroxylation reaction of p-hydroxybenzoate hydroxylase: studies of the Lys297Met, Asn300Asp, and Tyr385Phe mutants reconstituted with 8-Cl flavin
Biochemistry
40
8705-8716
2001
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Palfey, B.A.; Basu, R.; Frederick, K.K.; Entsch, B.; Ballou, D.P.
Role of protein flexibility in the catalytic cycle of p-hydroxybenzoate hydroxylase elucidated by the Pro293Ser mutant
Biochemistry
41
8438-8446
2002
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Ortiz-Maldonado, M.; Entsch, B.; Ballou, D.P.
Conformational changes combined with charge-transfer interactions are essential for reduction in catalysis by p-hydroxybenzoate hydroxylase
Biochemistry
42
11234-11242
2003
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Ortiz-Maldonado, M.; Entsch, B.; Ballou, D.P.
Oxygen reactions in p-hydroxybenzoate hydroxylase utilize the H-bond network during catalysis
Biochemistry
43
15246-15257
2004
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Ortiz-Maldonado, M.; Cole, L.J.; Dumas, S.M.; Entsch, B.; Ballou, D.P.
Increased positive electrostatic potential in p-hydroxybenzoate hydroxylase accelerates hydroxylation but slows turnover
Biochemistry
43
1569-1579
2004
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Wang, J.; Ortiz-Maldonado, M.; Entsch, B.; Massey, V.; Ballou, D.; Gatti, D.L.
Protein and ligand dynamics in 4-hydroxybenzoate hydroxylase
Proc. Natl. Acad. Sci. USA
99
608-613
2002
Pseudomonas aeruginosa (P20586)
Manually annotated by BRENDA team
Frederick, K.K.; Palfey, B.A.
Kinetics of proton-linked flavin conformational changes in p-hydroxybenzoate hydroxylase
Biochemistry
44
13304-13314
2005
Pseudomonas aeruginosa (P20586)
Manually annotated by BRENDA team
Chen, Z.; Shen, X.; Wang, J.; Wang, J.; Yuan, Q.; Yan, Y.
Rational engineering of p-hydroxybenzoate hydroxylase to enable efficient gallic acid synthesis via a novel artificial biosynthetic pathway
Biotechnol. Bioeng.
114
2571-2580
2017
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Maxel, S.; Aspacio, D.; King, E.; Zhang, L.; Acosta, A.P.; Li, H.
A growth-based, high-throughput selection platform enables remodeling of 4-hydroxybenzoate hydroxylase active site
ACS Catal.
10
6969-6974
2020
Pseudomonas aeruginosa (P20586), Pseudomonas aeruginosa, Pseudomonas aeruginosa ATCC 15692 (P20586), Pseudomonas aeruginosa 1C (P20586), Pseudomonas aeruginosa PRS 101 (P20586), Pseudomonas aeruginosa DSM 22644 (P20586), Pseudomonas aeruginosa CIP 104116 (P20586), Pseudomonas aeruginosa LMG 12228 (P20586), Pseudomonas aeruginosa JCM 14847 (P20586)
Manually annotated by BRENDA team
Moriwaki, Y.; Yato, M.; Terada, T.; Saito, S.; Nukui, N.; Iwasaki, T.; Nishi, T.; Kawaguchi, Y.; Okamoto, K.; Arakawa, T.; Yamada, C.; Fushinobu, S.; Shimizu, K.
Understanding the molecular mechanism underlying the high catalytic activity of p-hydroxybenzoate hydroxylase mutants for producing gallic acid
Biochemistry
58
4543-4558
2019
Pseudomonas aeruginosa (P20586), Pseudomonas aeruginosa ATCC 15692 (P20586), Pseudomonas aeruginosa 1C (P20586), Pseudomonas aeruginosa PRS 101 (P20586), Pseudomonas aeruginosa DSM 22644 (P20586), Pseudomonas aeruginosa CIP 104116 (P20586), Pseudomonas aeruginosa LMG 12228 (P20586), Pseudomonas aeruginosa JCM 14847 (P20586)
Manually annotated by BRENDA team