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Information on EC 1.11.1.21 - catalase-peroxidase and Organism(s) Burkholderia pseudomallei and UniProt Accession Q939D2

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EC Tree
     1 Oxidoreductases
         1.11 Acting on a peroxide as acceptor
             1.11.1 Peroxidases
                1.11.1.21 catalase-peroxidase
IUBMB Comments
Differs from EC 1.11.1.7, peroxidase in having a relatively high catalase (EC 1.11.1.6) activity with H2O2 as donor, releasing O2; both activities use the same heme active site. In Mycobacterium tuberculosis it is responsible for activation of the commonly used antitubercular drug, isoniazid.
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This record set is specific for:
Burkholderia pseudomallei
UNIPROT: Q939D2
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Word Map
The taxonomic range for the selected organisms is: Burkholderia pseudomallei
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria, Archaea
Reaction Schemes
2
=
+
2
2
=
+
2
Synonyms
catalase-peroxidase, catalase peroxidase, catalase/peroxidase, hydroperoxidase i, katg2, katx2, katg1, fvcp02, fvcp01, afkatg, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
catalase -peroxidase KatG
-
-
catalase-peroxidase
-
-
catalase/peroxidase
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
2 H2O2 = O2 + 2 H2O
show the reaction diagram
the catalytically relevant active site residues Trp111, Tyr238, and Met264 are linked by a covalent structure
-
SYSTEMATIC NAME
IUBMB Comments
donor:hydrogen-peroxide oxidoreductase
Differs from EC 1.11.1.7, peroxidase in having a relatively high catalase (EC 1.11.1.6) activity with H2O2 as donor, releasing O2; both activities use the same heme active site. In Mycobacterium tuberculosis it is responsible for activation of the commonly used antitubercular drug, isoniazid.
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) + H2O2
oxidized 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) + H2O
show the reaction diagram
-
-
-
?
H2O2
O2 + H2O
show the reaction diagram
2 H2O2
O2 + H2O
show the reaction diagram
-
-
-
-
?
2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) + H2O2
oxidized 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) + H2O
show the reaction diagram
-
-
-
-
?
3-chloroperoxybenzoic acid
?
show the reaction diagram
-
-
-
-
?
H2O2
O2 + H2O
show the reaction diagram
isoniazid + H2O2
?
show the reaction diagram
-
-
-
?
o-dianisidine + H2O2
oxidized o-dianisidine + H2O
show the reaction diagram
-
-
-
-
?
peroxyacetic acid
?
show the reaction diagram
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
H2O2
O2 + H2O
show the reaction diagram
2 H2O2
O2 + H2O
show the reaction diagram
-
-
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Na+
the enzyme possesses one Na+ per subunit
Fe2+
-
enzyme contains a heme modified with a special hydroperoxide group added to ring I
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
azide
-
highly sensitive
cyanide
-
highly sensitive
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0055 - 0.55
2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid)
0.09 - 180
H2O2
0.3
2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid)
-
peroxidase reaction, at pH 4.5 and 25°C
0.7 - 56
H2O2
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.22 - 6140
H2O2
7.9
2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid)
-
peroxidase reaction, at pH 4.5 and 25°C
5680 - 15900
H2O2
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.32 - 1500
H2O2
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.008
azide
Burkholderia pseudomallei
-
at pH 7.0 and 37°C
0.04
cyanide
Burkholderia pseudomallei
-
at pH 7.0 and 37°C
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
2200
purified recombinant enzyme, catalase-specific activity
3630
-
catalase specific activity, at pH 7.0 and 37°C
4.8
-
peroxidase specific activity, using 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) as substrate, at pH 4.5 and 25°C
5.3
-
peroxidase specific activity, using o-dianisidine as substrate, at pH 4.5 and 25°C
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.5
peroxidase activity of KatG
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
81600
x * 81600, sequence calculation
80000
-
about 80000, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 81600, sequence calculation
homodimer
x-ray crystallography
additional information
-
active site structure analysis of wild-type and mutant W111F enzymes
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion method, using 16-20% (w/v) PEG 4K, 20% (v/v) 2-methyl-2,4-pentanediol and 0.1 M sodium citrate pH 5.6, at 20°C
purified recombinant enzyme, hanging drop vapour diffusion method, 0.001 ml of 22 mg/ml protein in potassium phosphate, pH 7.0, mixed with equal volume of reservoir solution containing 16-20% PEG 4000, 20% 2-methyl-2,4-pentanediol, and 0.1 M sodium citrate, pH 5.6, 3-5 days, 20°C, X-ray diffraction strcuture determination and analysis at 1.8 A resolution, molecular replacement
crystal structure of the D141E variant determined at 1.8 A resolution
-
mutant enzyme D141A in complex with isoniazid, hanging drop vapor diffusion method, using 16-20% (w/v) PEG 4000, 20% (w/v) 2-methyl-2,4-pentanediol, and 0.1 M sodium citrate pH 5.6
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D141A
D141E
D141N
H112A
the mutant shows 0.02% of wild type catalase activity and 2.3% of wild type peroxidase activity
H112N
the mutant shows 0.05% of wild type catalase activity and 2.3% of wild type peroxidase activity
M264A
the mutant shows 0.15% of wild type catalase activity and 160% of wild type peroxidase activity
M264L
the mutant shows 0.02% of wild type catalase activity and 140% of wild type peroxidase activity
R108A
R108A/D141A
the mutant exhibits near normal catalase activity (82% of native) and decreased peroxidase activity
R108A/W111F
the mutant shows stronglydecreased catalase and peroxidase activities
R108A/W111F/D141A
the mutant shows strongly decreased catalase and peroxidase activities
R108K
R426A
the mutant shows 4.3% of wild type catalase activity and 99% of wild type peroxidase activity
R426K
the mutant shows 70% of wild type catalase activity and 97% of wild type peroxidase activity
S324T
the mutant shows 109% of wild type catalase activity and 94% of wild type peroxidase activity
W111F
the mutant shows 0.05% of wild type catalase activity and 75% of wild type peroxidase activity
Y238A
the mutant shows 0.05% of wild type catalase activity and 140% of wild type peroxidase activity
Y238F
the mutant shows 0.15% of wild type catalase activity and 64% of wild type peroxidase activity
A143Q
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
A143V
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
A290Q
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
A290Y
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
D141A
D141A/R108A
-
the reaction with peroxyacetic acid is clearly slower than for mutant D141A
D141E
-
mutant with normal catalase activity but with modified kinetics
E242Q
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
L209D
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
L236D
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
Q233E
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
R108A
R108A/D141A
-
activity is 18% lower than wild-type activity
W111F
-
site-directed mutagenesis, active site structure analysis
W309F
the mutant shows unchanged catalase and peroxidase activities compared to the wild type enzyme
W330F
-
the mutant exhibits slightly reduced catalase- and peroxidase-specific activities but a faster peroxidase turnover rate compared to the wild type enzyme
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
65
-
the enzyme is completely inactive after less than 1 min at 65°C
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
ammonium sulfate precipitation and DEAE-cellulose column chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli strain UM262
recombinant expression
expressed in Escherichia coli
-
expression in Escherichia coli
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
the enzyme responsible for the activation of isoniazid as an antibiotic
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Carpena, X.; Switala, J.; Loprasert, S.; Mongkolsuk, S.; Fita, I.; Loewen, P.C.
Crystallization and preliminary X-ray analysis of the catalase-peroxidase KatG from Burkholderia pseudomallei
Acta Crystallogr. Sect. D
58
2184-2186
2002
Burkholderia pseudomallei (Q939D2), Burkholderia pseudomallei
Manually annotated by BRENDA team
Donald, L.J.; Krokhin, O.V.; Duckworth, H.W.; Wiseman, B.; Deemagarn, T.; Singh, R.; Switala, J.; Carpena, X.; Fita, I.; Loewen, P.C.
Characterization of the catalase-peroxidase KatG from Burkholderia pseudomallei by mass spectrometry
J. Biol. Chem.
278
35687-35692
2003
Burkholderia pseudomallei
Manually annotated by BRENDA team
Deemagarn, T.; Wiseman, B.; Carpena, X.; Ivancich, A.; Fita, I.; Loewen, P.C.
Two alternative substrate paths for compound I formation and reduction in catalase-peroxidase KatG from Burkholderia pseudomallei
Proteins
66
219-228
2007
Burkholderia pseudomallei
Manually annotated by BRENDA team
Singh, R.; Wiseman, B.; Deemagarn, T.; Jha, V.; Switala, J.; Loewen, P.
Comparative study of catalase-peroxidases (KatGs)
Arch. Biochem. Biophys.
471
207-214
2008
Archaeoglobus fulgidus, Burkholderia pseudomallei, Escherichia coli, Geobacillus stearothermophilus, Mycobacterium tuberculosis, Rhodobacter capsulatus, Synechocystis sp.
Manually annotated by BRENDA team
Vlasits, J.; Jakopitsch, C.; Bernroitner, M.; Zamocky, M.; Furtmueller, P.G.; Obinger, C.
Mechanisms of catalase activity of heme peroxidases
Arch. Biochem. Biophys.
500
74-81
2010
Haloarcula marismortui (O59651), Mycobacterium tuberculosis (P9WIE5), Synechococcus elongatus (Q31MN3), Burkholderia pseudomallei (Q939D2), Mycobacterium tuberculosis H37Rv (P9WIE5), Synechococcus elongatus PCC 7942 (Q31MN3)
Manually annotated by BRENDA team
Wiseman, B.; Colin, J.; Smith, A.T.; Ivancich, A.; Loewen, P.C.
Mechanistic insight into the initiation step of the reaction of Burkholderia pseudomallei catalase-peroxidase with peroxyacetic acid
J. Biol. Inorg. Chem.
14
801-811
2009
Burkholderia pseudomallei
Manually annotated by BRENDA team
Smulevich, G.; Jakopitsch, C.; Droghetti, E.; Obinger, C.
Probing the structure and bifunctionality of catalase-peroxidase (KatG)
J. Inorg. Biochem.
100
568-585
2006
Escherichia coli, Mycobacterium tuberculosis (P9WIE5), Synechococcus sp. (Q31MN3), Burkholderia pseudomallei (Q939D2), Synechococcus sp. PCC 7942 (Q31MN3), Mycobacterium tuberculosis H37Rv (P9WIE5)
Manually annotated by BRENDA team
Carpena, X.; Loprasert, S.; Mongkolsuk, S.; Switala, J.; Loewen, P.C.; Fita, I.
Catalase-peroxidase KatG of Burkholderia pseudomallei at 1.7A resolution
J. Mol. Biol.
327
475-489
2003
Burkholderia pseudomallei (Q939D2), Burkholderia pseudomallei
Manually annotated by BRENDA team
Deemagarn, T.; Wiseman, B.; Carpena, X.; Ivancich, A.; Fita, I.; Loewen, P.C.
Two alternative substrate paths for compound I formation and reduction in catalase-peroxidase KatG from Burkholderia pseudomallei
Proteins Struct. Funct. Bioinform.
66
219-228
2007
Burkholderia pseudomallei (Q939D2), Burkholderia pseudomallei
Manually annotated by BRENDA team
Ivancich, A.; Donald, L.J.; Villanueva, J.; Wiseman, B.; Fita, I.; Loewen, P.C.
Spectroscopic and kinetic investigation of the reactions of peroxyacetic acid with Burkholderia pseudomallei catalase-peroxidase, KatG
Biochemistry
52
7271-7282
2013
Burkholderia pseudomallei
Manually annotated by BRENDA team
Zamocky, M.; Gasselhuber, B.; Furtmueller, P.G.; Obinger, C.
Turning points in the evolution of peroxidase-catalase superfamily molecular phylogeny of hybrid heme peroxidases
Cell. Mol. Life Sci.
71
4681-4696
2014
Burkholderia pseudomallei
Manually annotated by BRENDA team
Vidossich, P.; Loewen, P.C.; Carpena, X.; Fiorin, G.; Fita, I.; Rovira, C.
Binding of the antitubercular pro-drug isoniazid in the heme access channel of catalase-peroxidase (KatG). A combined structural and metadynamics investigation
J. Phys. Chem. B
118
2924-2931
2014
Burkholderia pseudomallei (Q3JNW6), Burkholderia pseudomallei 1710b (Q3JNW6)
Manually annotated by BRENDA team