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Information on EC 1.1.3.10 - pyranose oxidase and Organism(s) Trametes ochracea and UniProt Accession Q7ZA32

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EC Tree
     1 Oxidoreductases
         1.1 Acting on the CH-OH group of donors
             1.1.3 With oxygen as acceptor
                1.1.3.10 pyranose oxidase
IUBMB Comments
A flavoprotein (FAD). Also oxidizes D-xylose, L-sorbose and D-glucono-1,5-lactone, which have the same ring conformation and configuration at C-2, C-3 and C-4.
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Trametes ochracea
UNIPROT: Q7ZA32
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Word Map
The taxonomic range for the selected organisms is: Trametes ochracea
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota
Synonyms
pyranose 2-oxidase, pyranose oxidase, carbohydrate oxidase, glucose 2-oxidase, pyranose-2-oxidase, pyranose/oxygen 2-oxidoreductase, tmp2ox, pyranose:oxygen-2-oxidoreductase, glucose-2-oxidase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
glucose 2-oxidase
-
pyranose oxidase
-
pyranose:oxygen 2-oxidoreductase
-
carbohydrate oxidase
-
-
-
-
glucose 2-oxidase
PROD
-
-
-
-
pyranose oxidase
-
-
pyranose-2-oxidase
-
-
-
-
pyranose:oxygen 2-oxidoreductase
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
D-glucose + O2 = 2-dehydro-D-glucose + H2O2
show the reaction diagram
D-glucose + O2 = 2-dehydro-D-glucose + H2O2
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
-
oxidation
-
-
-
-
reduction
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
pyranose:oxygen 2-oxidoreductase
A flavoprotein (FAD). Also oxidizes D-xylose, L-sorbose and D-glucono-1,5-lactone, which have the same ring conformation and configuration at C-2, C-3 and C-4.
CAS REGISTRY NUMBER
COMMENTARY hide
37250-80-9
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
2-deoxy-2-fluoro-D-glucose + O2
2-deoxy-3-dehydro-D-glucose + H2O2
show the reaction diagram
slow substrate
-
-
?
2-deoxy-D-galactose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
2-deoxy-D-glucose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
beta-D-galactose + O2
2-dehydro-D-galactose + H2O2
show the reaction diagram
poor substrate
-
-
?
D-cellobiose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-fucose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-galactose + 1,4-benzoquinone
2-dehydro-D-galactose + 1,4-hydroquinone
show the reaction diagram
D-galactose + 1,4-benzoquinone
2-dehydro-D-galactose + hydroquinone
show the reaction diagram
-
-
-
?
D-galactose + 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) cation radical
2-dehydro-D-galactose + 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid)
show the reaction diagram
-
-
-
?
D-galactose + ferricenium ion
2-dehydro-D-galactose + ferrocenium ion
show the reaction diagram
-
-
-
r
D-galactose + ferrocenium hexafluorophosphate
2-dehydro-D-galactose + ferrocene
show the reaction diagram
-
-
-
?
D-galactose + O2
2-dehydro-D-galactose + H2O2
show the reaction diagram
D-galactose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-glucose + 1,4-benzoquinone
2-dehydro-D-glucose + 1,4-hydroquinone
show the reaction diagram
D-glucose + 1,4-benzoquinone
2-dehydro-D-glucose + hydroquinone
show the reaction diagram
D-glucose + 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) cation radical
2-dehydro-D-glucose + 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid)
show the reaction diagram
-
-
-
?
D-glucose + 2,6-dichlorophenolindophenol
2-dehydro-D-glucose + reduced 2,6-dichlorophenolindophenol
show the reaction diagram
D-glucose + ferricenium ion
2-dehydro-D-glucose + ferrocenium ion
show the reaction diagram
D-glucose + ferrocenium hexafluorophosphate
2-dehydro-D-glucose + ferrocene
show the reaction diagram
-
-
-
?
D-glucose + O2
2-dehydro-D-glucose + H2O2
show the reaction diagram
D-maltoheptaose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-maltopentaose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-maltotriose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-melibiose + O2
?
show the reaction diagram
-
-
-
?
D-trehalose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
D-xylose + O2
2-dehydro-D-xylose + H2O2
show the reaction diagram
-
-
-
?
D-xylose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
L-arabinose + O2
?
show the reaction diagram
selectivity of pyranose 2-oxidase-based biosensor system for different sugar substrates analyzed
-
-
?
wheat flour + O2
?
show the reaction diagram
-
-
-
?
1,5-anhydro-D-sorbitol + O2
?
show the reaction diagram
-
-
-
-
?
1,6-anhydro-D-glucose + O2
?
show the reaction diagram
-
-
-
-
?
2,6-dimethyl-1,4-benzoquinone + O2
? + H2O2
show the reaction diagram
-
-
-
-
?
3-deoxy-D-glucose + O2
2-keto-3-deoxy-D-glucose + H2O2
show the reaction diagram
-
-
-
?
5-thioglucose + O2
2-keto-5-thioglucose + H2O2
show the reaction diagram
-
24% relative activity to D-glucose
-
?
6-deoxy-D-glucose + O2
2-keto-6-deoxy-D-glucose + H2O2
show the reaction diagram
-
-
-
?
allose + O2
?
show the reaction diagram
-
38% relative activity to D-glucose
-
-
?
D-fucose + O2
?
show the reaction diagram
-
-
-
-
?
D-galactose + 1,4-benzoquinone
2-dehydro-D-galactose + 1,4-hydroquinone
show the reaction diagram
-
-
-
-
?
D-galactose + ferricenium hexafluorophosphate
2-dehydro-D-galactose + ferrocenium hexafluorophosphate
show the reaction diagram
-
-
-
-
r
D-galactose + O2
2-dehydro-D-galactose + H2O2
show the reaction diagram
D-gluconolactone + O2
? + H2O2
show the reaction diagram
-
64% relative activity to D-glucose
-
?
D-glucose + 1,4-benzoquinone
2-dehydro-D-glucose + 1,4-hydroquinone
show the reaction diagram
-
-
-
-
?
D-glucose + 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) cation radical
2-dehydro-D-glucose + 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid)
show the reaction diagram
-
-
-
-
?
D-glucose + 2,6-dichlorophenolindophenol
2-dehydro-D-glucose + reduced 2,6-dichlorophenolindophenol
show the reaction diagram
-
-
-
-
r
D-glucose + ferricenium hexafluorophosphate
2-dehydro-D-glucose + ferrocenium hexafluorophosphate
show the reaction diagram
-
-
-
-
r
D-glucose + methyl-1,4-benzoquinone
2-dehydro-D-glucose + methylhydroquinone
show the reaction diagram
-
-
-
-
r
D-glucose + O2
2-dehydro-D-glucose + H2O2
show the reaction diagram
D-glucose + O2
D-glucosone + H2O2
show the reaction diagram
D-glucose + tetrabromo-1,4-benzoquinone
2-dehydro-D-glucose + tetrabromohydroquinone
show the reaction diagram
-
-
-
-
r
D-mannoheptose + O2
?
show the reaction diagram
-
8.2% relative activity to D-glucose
-
-
?
D-xylose + O2
D-xylosone + H2O2
show the reaction diagram
-
56% relative activity to D-glucose
-
?
gentibiose + O2
2-keto-D-gentibiose + H2O2
show the reaction diagram
-
23% relative activity to D-glucose
-
?
L-arabinose + O2
?
show the reaction diagram
-
1.5% relative activity to D-glucose
-
-
?
L-idose + O2
?
show the reaction diagram
-
-
-
-
?
L-sorbose + O2
5-dehydro-D-fructose + H2O2
show the reaction diagram
-
99% relative activity to D-glucose
-
?
tetrafluoro-1,4-benzoquinone + O2
? + H2O2
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
D-glucose + O2
2-dehydro-D-glucose + H2O2
show the reaction diagram
D-galactose + O2
2-dehydro-D-galactose + H2O2
show the reaction diagram
-
mutants T169S, T169N, and T169G
-
-
?
D-glucose + O2
2-dehydro-D-glucose + H2O2
show the reaction diagram
-
-
-
-
?
additional information
?
-
-
pyranose 2-oxidase from Trametes multicolor is a flavoenzyme that catalyzes the oxidation of D-glucose and other aldopyranose sugars at the C2 position by using O2 as an electron acceptor to form the corresponding 2-oxo-sugars and H2O2
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
acetate
competitive inhibitor
2-keto-D-glucose
-
5% reduction at 100 mM, 10% reduction at 200 mM, no deactivating effect determined
hydrogen peroxide
-
inactivation determined
propionate
-
-
valerate
-
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0052 - 0.241
1,4-benzoquinone
10.32
2-deoxy-D-galactose
100 mM ethanolamine buffer, pH 10.5
11.85
2-deoxy-D-glucose
100 mM ethanolamine buffer, pH 10.5
0.71
D-cellobiose
100 mM ethanolamine buffer, pH 10.5
6.25
D-fucose
100 mM ethanolamine buffer, pH 10.5
0.093 - 1260
D-galactose
0.018 - 100
D-glucose
6.02
D-maltoheptaose
100 mM ethanolamine buffer, pH 10.5
6.14
D-maltopentaose
100 mM ethanolamine buffer, pH 10.5
6.61
D-maltotriose
100 mM ethanolamine buffer, pH 10.5
2 - 1500
D-melibiose
7.51
D-trehalose
100 mM ethanolamine buffer, pH 10.5
6.21 - 78.4
D-xylose
0.054 - 0.408
ferricenium ion
0.015 - 0.4
ferrocenium hexafluorophosphate
1.55
L-arabinose
100 mM ethanolamine buffer, pH 10.5
0.46
O2
pH and temperature not specified in the publication
0.043 - 2
1,4-benzoquinone
0.07
2,2'-azinobis(3-ethylbenzthiazolinesulfonic acid) cation radical
-
pH 6.5, substrate: D-glucose
0.065 - 0.094
2,6-dichlorophenolindophenol
0.83 - 2.1
2,6-dimethyl-1,4-benzoquinone
3.9
5-thioglucose
-
-
36
D-allose
-
-
0.4 - 50
D-galactose
38
D-gluconolactone
-
-
0.44 - 47
D-glucose
110
D-mannoheptose
-
-
30
D-xylose
-
-
0.092 - 1.06
ferricenium hexafluorophosphate
62
gentibiose
-
-
0.79 - 0.85
glucose
97
L-arabinose
-
-
38
L-sorbose
-
-
0.35 - 0.4
methyl-1,4-benzoquinone
0.03 - 4.8
O2
0.09
oxygen
-
pH 6.5, substrate: D-glucose
0.09
tetrabromo-1,4-benzoquinone
0.088
tetrachloro-1,4-benzoquinone
-
pH 6.5, substrate: D-glucose
0.22
tetrafluoro-1,4-benzoquinone
-
pH 6.5, substrate: D-glucose
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.2 - 220
1,4-benzoquinone
0.14 - 171
D-galactose
0.072 - 615
D-glucose
0.19 - 7.6
D-melibiose
1.44 - 334
ferricenium ion
2.9 - 470
ferrocenium hexafluorophosphate
324
1,4-benzoquinone
-
soluble enzyme, 500 mM glucose used as electron acceptor, pH 5.0
0.3 - 13.7
D-galactose
0.006 - 49
D-glucose
49
glucose
-
soluble enzyme, O2 used as electron acceptor, determined in cuvette assay, pH 5.0
5.9 - 70
O2
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
37 - 3000
1,4-benzoquinone
0.011 - 1.43
D-galactose
0.094 - 2608
D-glucose
0.0037 - 0.0166
D-melibiose
63 - 1640
ferrocenium hexafluorophosphate
0.005 - 0.5
D-galactose
0.002 - 57.6
D-glucose
0.07 - 110
O2
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
9.2
acetate
-
pH 6.5, 30°C
19
formate
-
pH 6.5, 30°C
250
propionate
-
pH 6.5, 30°C
3600
valerate
-
pH 6.5, 30°C
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.27
-
V546C/T169G/L537W mutant, substrate D-glucose (constant O2 concentration), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
0.34
-
V546C/T169G/L537W mutant, substrate D-galactose (constant O2 concentration), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
0.38
-
V546C/T169G mutant, substrate D-galactose (constant O2 concentration), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
0.43
-
V546C/T169G mutant, substrate D-glucose (constant O2 concentration), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
103
-
V546C/T169G/L537W mutant, substrate 1,4-benzoquinone (constant D-galactose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
189
-
V546C/T169G mutant, substrate 1,4-benzoquinone (constant D-galactose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
221
-
V546C/T169G mutant, substrate ferricenium hexafluorophosphate (constant D-glucose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
24.1
-
V546C/T169G/L537W mutant, substrate 1,4-benzoquinone (constant D-glucose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
246
-
V546C/E542K mutant, substrate ferricenium hexafluorophosphate (constant D-glucose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
261
-
V546C/T169G mutant, substrate ferricenium hexafluorophosphate (constant D-galactose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
42.1
-
V546C/T169G mutant, substrate 1,4-benzoquinone (constant D-glucose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
5.54
-
V546C/E542K mutant, substrate ferricenium hexafluorophosphate (constant D-galactose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
51.9
-
V546C/T169G/L537W mutant, substrate ferricenium hexafluorophosphate (constant D-galactose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
56.4
-
V546C/T169G/L537W mutant, substrate ferricenium hexafluorophosphate (constant D-glucose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
6.13
-
V546C/E542K mutant, substrate D-galactose (constant O2 concentration), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
664
-
V546C/E542K mutant, substrate 1,4-benzoquinone (constant D-glucose concentration, 100 mM), activity determined spectrophotometrically at 420nm by measuring formation of H2O2 with a horse-radish peroxidase-coupled assay using 2,2' azinobis(3-ethylbenzthiazolinesulfonic acid) as the chromogen, 30°C, pH 6.5
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
10.5
activity assay at
4
-
electron acceptor: 2,6-dimethyl-1,4-benzoquinone
4.5
-
electron acceptor: 2,6-dichloroindophenol
5
-
activity assay at
5.5 - 6.5
-
electron acceptor: oxygen or 1,4-benzoquinone
6 - 8
-
electron acceptor: tetrachloro-1,4-benzoquinone
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8 - 11
optimal buffer combination for the pyranose 2-oxidase systems determined
5 - 10
-
activity range
5.5 - 8.5
-
substrate D-glucose, measuring oxygen consumption (computer-interfaced Oxy-32 oxygen-monitoring system), 30°C, varying concentrations of both D-glucose and oxygen. Ping-pong kinetic mechanism at pH values below 7.0 and an ordered mechanism at pH above 7.0
additional information
-
flavin oxidation occurs via different pathways depending on the pH of the environment. At pH values lower than 8.0, the reduced enzyme reacts with O2 to form a C4a-hydroperoxyflavin intermediate, leading to elimination of H2O2. At pH 8.0 and higher, the majority of the reduced enzyme reacts with O2 via a pathway that does not allow detection of the C4a-hydroperoxyflavin, and flavin oxidation occurs with decreased rate constants upon the rise in pH. The switching between the two modes of enzyme oxidation is controlled by protonation of a group which has a pKa of 7.6, stopped-flow spectrophotometry, overview. The protonation of the group which controls the mode of flavin oxidation cannot be rapidly equilibrated with outside solvent. Using a double-mixing stopped-flow experiment, a rate constant for proton dissociation from the reaction site is determined to be 21.0 s-1
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
30
-
activity assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
hyphal periplasmic space
-
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
Q7ZA32_TRAOC
623
0
69342
TrEMBL
Mitochondrion (Reliability: 4)
PDB
SCOP
CATH
UNIPROT
ORGANISM
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
270000
65000
x * 65000, SDS-PAGE
262000
-
gel filtration
270000
278000
-
electron microscopy
65000
-
4 * 65000, SDS-PAGE, corroborated by electron microscopy studies
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
homotetramer
tetramer
-
4 * 65000, SDS-PAGE, corroborated by electron microscopy studies
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion method, using 0.1 M MES (pH 5.2), 50 mM MgCl2, and 10% (w/v) monomethylether polyethylene glycol 2000
mutant enzymes are crystallized by the hanging drop vapor diffusion method, using 10% (w/v) monomethyl ether poly(ethlene glycol) 2000 , 0.1 M MES (pH 5.2), 50 mM MgCl2
mutant enzymes H167A and T169, Ahanging drop vapor diffusion method, using 0.1 M sodium acetate (pH 4.6), 50 mM MgCl2, and 6% (w/v) monomethyl ether PEG 2000
P2O H167A mutant in complex with 3-deoxy-3-fluoro-D-glucose, microseeded hanging drops, mixing of equal volumes of 0.1 M MES, pH 5.2, 50 mM MgCl2, 10% w/v PEG monomethyl ether 2000 with 20 mg/ml protein in 20 mM MES, pH 5.2, addition of ligand in saturated mother liquor with 28% w/v PEG 2000, X-ray diffraction structure determination and analysis at 1.35 A resolution
hanging drop method
-
wild-type and mutants, structure analysis, overview
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D452A/R472A
the mutant shows drastic effects on the binding constant for D-glucose
E542K
E542R
mutant, analysis of kinetic parameters
F454A/S455A/Y456A
the mutant shows decreased catalytic efficiency for D-glucose/O2 compared to the wild type enzyme
F454A/Y456A
the mutant shows decreased catalytic efficiency for D-glucose/O2 compared to the wild type enzyme
F454N
F454P
the mutant shows strongly decreased catalytic efficiency for D-glucose/O2 compared to the wild type enzyme
H167A
H450G
H450G/E542K/V546C
mutant shows catalytic efficiency for its substrate D-galactose that is increased 1.2fold compared to the wild type enzyme while kcat/KM for D-glucose is decreased to 17% of its original value
H450G/V546C
H450Q
the turnover number for the electron donor/acceptor substrate pair D-galactose/O2 is comparable to that of the wild type enzyme
H548A
partially FAD-deficient mutant
H548I
mutant, analysis of kinetic parameters
H548N
partially FAD-deficient mutant
H548R
mutant, analysis of kinetic parameters
L537G
mutant, analysis of kinetic parameters
L537G/E542K
mutant, analysis of kinetic parameters
L537G/E542R
mutant, analysis of kinetic parameters
L537W
mutant, analysis of kinetic parameters
L537W/E542K
mutant, analysis of kinetic parameters
L537W/E542R
mutant, analysis of kinetic parameters
L545C
L547R
N593C
the mutant shows 0.058% of wild type activity
N593R
mutant, analysis of kinetic parameters
Q448C
mutant, analysis of kinetic parameters
Q448H
Q448N
mutant, analysis of kinetic parameters
Q448S
mutant, analysis of kinetic parameters
R472G
mutant, analysis of kinetic parameters
R472L
mutant, analysis of kinetic parameters
T166R
T169A
FAD-deficient mutant
T169G
T169G/E542K/V546C
mutant, analysis of kinetic parameters and thermal stability
T169N
T169S
T196G/V546C
the mutant exhibits reduced D-glucose conversion and D-galactose conversion activities
V546C
V546C/T169N
mutant, analysis of kinetic parameters
V546G
mutant, analysis of kinetic parameters
V546G/T169G
mutant, analysis of kinetic parameters
V546P
mutant, analysis of kinetic parameters
V546P/T169G
mutant, analysis of kinetic parameters
Y456W
the turnover number for the electron donor/acceptor substrate pair D-galactose/O2 is comparable to that of the wild type enzyme
F454A
-
the mutant shows about 40fold reduced catalytic efficiency compared to the wild type enzyme
F454Y
-
the mutant shows about 3.5fold reduced catalytic efficiency compared to the wild type enzyme
H167A
H167A/H548A
-
site-directed mutagenesis, reductively inactive mutant, contains noncovalently linked FAD
H167A/H548D
-
site-directed mutagenesis, reductively inactive mutant, contains noncovalently linked FAD
H167A/H548N
-
site-directed mutagenesis, reductively inactive mutant, contains noncovalently linked FAD
H167A/H548R
H167A/H548S
-
site-directed mutagenesis, reductively inactive mutant, contains noncovalently linked FAD
H169S
-
site-directed mutagenesis, spectroscopic analysis and molecular dynamics of the T169S P2O-acetate complex
H548A
-
site-directed mutagenesis, reductive activity of the mutant is reduced compared to the wild-type enzyme, contains noncovalently and covalently linked FAD
H548D
-
site-directed mutagenesis, reductive activity of the mutant is reduced compared to the wild-type enzyme, contains noncovalently and covalently linked FAD
H548N
-
site-directed mutagenesis, reductive activity of the mutant is reduced compared to the wild-type enzyme, contains noncovalently and covalently linked FAD
H548R
-
site-directed mutagenesis, reductive activity of the mutant is slightly reduced compared to the wild-type enzyme, contains some noncovalently and mostly covalently linked FAD
H548S
-
site-directed mutagenesis, reductive activity of the mutant is reduced compared to the wild-type enzyme, contains noncovalently and covalently linked FAD
N593C
-
the mutant shows a complete loss of the oxidase function with full preservation of substrate (dehydrogenase) activity
N593H
-
site-directed mutagenesis, the enzyme contains a covalently linked FAD, similar to the wild-type enzyme
T169A
T169G
T169N
T169S
V546C/E542K
-
mutant, analysis of kinetic parameters
V546C/T169G
-
mutant, analysis of kinetic parameters
V546C/T169G/L537W
-
mutant, analysis of kinetic parameters
additional information
pH STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
3
-
half-life: 13 days
389649
3.5
-
half-life: 52 days
389649
4
-
half-life: 130 days
389649
4.5
-
half-life: 350 days
389649
5 - 7
-
extremely stable, half-life more than 500 days
389649
additional information
-
stability of soluble and immobilized enzymes examined by incubating samples at 30°C for 7 days in citrate-phosphate buffer ranging from pH 4 to 8, similar stability obtained in free or immobilized form
687890
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4
under dry and wet storage conditions stable at 4°C, under dry storage conditions retainment of 100% of original activity after 2 days and of about 90% after one week, storage in working buffer solutions decreases activity by about 10% after one day and by more than 50% after one week
60
T169G/E542K/V546C mutant, half life is increased 76fold compared to wild-type
60 - 70
60.7
melting temperature of wild-type
69
melting temperature of mutant L547W, increased half-life compared to wild-type
70
T169G/E542K/V546C mutant, half life is increased 350fold compared to wild-type
71.1
melting temperature of mutant L547G, increased half-life compared to wild-type
74.2
melting temperature of mutant E542K, increased half-life compared to wild-type
74.3
melting temperature of mutant E542R, increased half-life compared to wild-type
additional information
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
continuous homogenizer, IMAC Ni-Charged Resin
IMAC Ni-charged resin column chromatography
immobilized metal ion affinity chromatography
Ni2+ immobilized column with Chelating Sepharose Fast Flow combined with Äkta Purifier System, concentrated in an Amicon Ultra Centrifugal Filter Device
Ni2+-immobilized metal affinity column chromatography
recombinant His-tagged enzyme from Escherichia coli strain BL21(DE3) by nickel affinit chromatography and ulrafiltration
recombinant protein, gel purification and SDS-PAGE
wild-type and recombinant protein, gel purification
IMAC Ni-charged resin column chromatography
-
protein purification by immobilized metal affinity chromatography, ultrafiltration, concentration of enzymes
-
recmbinant enzyme from Escherichia coli by ammonium sulfate fractionation, anion exchange chromatography, and gel filtration
-
recombinant protein, gel purified to specific activity of 4.2 U/mg
-
stored, wet cell paste is treated with lysozyme, PMSF, EDTA buffer. Following steps are RNAse and DNAse treatment, sonication, dialyse, DEAE Sepharose Fast Flow column, dialyse, Phenyl Sepharose Fast Flow column, concentration by ammonium sulfate saturation, final dialyse. Stored at 20°C
-
using ammonium sulfate fractionation, hydrophobic interaction, ion-exchange chromatography, and gel filtration
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
expressed in Escherichia coli BL21 Star (DE3) cells
expressed in Escherichia coli BL21 Star DE3 cells
expressed in Escherichia coli BL21-DE3, recombinant host strains shown to be different in formation of inclusion bodies between inserts of Trametes ochracea and Trametes pubescens at higher growth temperatures, plasmids pSE33 and pRQ5 used for site-directed recombination
expressed in Escherichia coli BL21-DE3, recombinant protein, plasmids pHL2e and pCL22 encoding the E542K mutant used
expression in Escherichia coli
expression of His-tagged enzyme in Escherichia coli strain BL21(DE3)
heterologously expressed in E. coli BL21 Star DE3
heterologously expressed in Escherichia coli BL21 (DE3)
mutant enzymes are expressed in Escherichia coli XL1-blue cells
expressed in Escherichia coli BL21 Star DE3 cells
-
expressed in Escherichia coli BL21-DE3, recombinant protein, expression vector pET21
-
heterologously expressed in Escherichia coli BL21 (DE3)
-
heterologously expressed in Escherichia coli BL21 Star DE3
-
recombinant expression in Escherichia coli
-
recombinant expression of pyranose 2-oxidase in Escherichia coli strain Rosetta(DE3)pLysS
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
biotechnology
food industry
the enzyme improves dough stability and bread quality
biotechnology
energy production
-
enzyme P2O has the potential to be useful for biofuel cell applications
synthesis
-
enzyme P2O is a useful biocatalyst in several biotechnological applications, including biotransformation of carbohydrates such as D-glucose and D-galactose to generate 2-oxo-sugars that can be further reduced at the C1 position to yield D-fructose and D-tagatose, respectively
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Leitner, C.; Volc, J.; Haltrich, D.
Purification and characterization of pyranose oxidase from the white rot fungus Trametes multicolor
Appl. Environ. Microbiol.
67
3636-3644
2001
Trametes ochracea
Manually annotated by BRENDA team
Halada, P.; Leitner, C.; Sedmera, P.; Haltrich, D.; Volc, J.
Identification of the covalent flavin adenine dinucleotide-binding region in pyranose 2-oxidase from Trametes multicolor
Anal. Biochem.
314
235-242
2003
Trametes ochracea
Manually annotated by BRENDA team
Hallberg, B.M.; Leitner, C.; Haltrich, D.; Divne, C.
Crystal structure of the 270 kDa homotetrameric lignin-degrading enzyme pyranose 2-oxidase
J. Mol. Biol.
341
781-796
2004
Trametes ochracea
Manually annotated by BRENDA team
Kujawa, M.; Ebner, H.; Leitner, C.; Hallberg, B.M.; Prongjit, M.; Sucharitakul, J.; Ludwig, R.; Rudsander, U.; Peterbauer, C.; Chaiyen, P.; Haltrich, D.; Divne, C.
Structural basis for substrate binding and regioselective oxidation of monosaccharides at C3 by pyranose 2-oxidase
J. Biol. Chem.
281
35104-35115
2006
Trametes ochracea (Q7ZA32)
Manually annotated by BRENDA team
Tasca, F.; Timur, S.; Ludwig, R.; Haltrich, D.; Volc, J.; Antiochia, R.; Gorton, L.
Amperometric biosensors for detection of sugars based on the electrical wiring of different pyranose oxidases and pyranose dehydrogenases with osmium redox polymer on graphite electrodes
Electroanalysis
19
294-302
2007
Trametes ochracea (Q7ZA32)
-
Manually annotated by BRENDA team
Maresova, H.; Palyzova, A.; Kyslik, P.
The C-terminal region controls correct folding of genus Trametes pyranose 2-oxidases
J. Biotechnol.
130
229-235
2007
Trametes pubescens (Q5G234), Trametes pubescens, Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Sukyai, P.; Rezic, T.; Lorenz, C.; Mueangtoom, K.; Lorenz, W.; Haltrich, D.; Ludwig, R.
Comparing soluble and co-immobilized catalysts for 2-ketoaldose production by pyranose 2-oxidase and auxiliary enzymes
J. Biotechnol.
135
281-290
2008
Trametes ochracea
Manually annotated by BRENDA team
Rungsrisuriyachai, K.; Gadda, G.
A pH switch affects the steady-state kinetic mechanism of pyranose 2-oxidase from Trametes ochracea
Arch. Biochem. Biophys.
483
10-15
2009
Trametes ochracea
Manually annotated by BRENDA team
Prongjit, M.; Sucharitakul, J.; Wongnate, T.; Haltrich, D.; Chaiyen, P.
Kinetic mechanism of pyranose 2-oxidase from trametes multicolor
Biochemistry
48
4170-4180
2009
Trametes ochracea
Manually annotated by BRENDA team
Van Hecke, W.; Salaheddin, C.; Ludwig, R.; Dewulf, J.; Haltrich, D.; Van Langenhove, H.
Biocatalytic cascade oxidation using laccase for pyranose 2-oxidase regeneration
Biores. Technol.
100
5566-5573
2009
Trametes ochracea, Trametes ochracea MB 49
Manually annotated by BRENDA team
Spadiut, O.; Radakovits, K.; Pisanelli, I.; Salaheddin, C.; Yamabhai, M.; Tan, T.C.; Divne, C.; Haltrich, D.
A thermostable triple mutant of pyranose 2-oxidase from Trametes multicolor with improved properties for biotechnological applications
Biotechnol. J.
4
525-534
2009
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Salaheddin, C.; Spadiut, O.; Ludwig, R.; Tan, T.C.; Divne, C.; Haltrich, D.; Peterbauer, C.
Probing active-site residues of pyranose 2-oxidase from Trametes multicolor by semi-rational protein design
Biotechnol. J.
4
535-543
2009
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Spadiut, O.; Leitner, C.; Salaheddin, C.; Varga, B.; Vertessy, B.G.; Tan, T.C.; Divne, C.; Haltrich, D.
Improving thermostability and catalytic activity of pyranose 2-oxidase from Trametes multicolor by rational and semi-rational design
FEBS J.
276
776-792
2009
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Spadiut, O.; Pisanelli, I.; Maischberger, T.; Peterbauer, C.; Gorton, L.; Chaiyen, P.; Haltrich, D.
Engineering of pyranose 2-oxidase: improvement for biofuel cell and food applications through semi-rational protein design
J. Biotechnol.
139
250-257
2009
Trametes ochracea
Manually annotated by BRENDA team
Sucharitakul, J.; Wongnate, T.; Chaiyen, P.
Kinetic isotope effects on the noncovalent flavin mutant protein of pyranose 2-oxidase reveal insights into the flavin reduction mechanism
Biochemistry
49
3753-3765
2010
Trametes ochracea
Manually annotated by BRENDA team
Spadiut, O.; Tan, T.C.; Pisanelli, I.; Haltrich, D.; Divne, C.
Importance of the gating segment in the substrate-recognition loop of pyranose 2-oxidase
FEBS J.
277
2892-2909
2010
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Spadiut, O.; Nguyen, T.T.; Haltrich, D.
Thermostable variants of pyranose 2-oxidase showing altered substrate selectivity for glucose and galactose
J. Agric. Food Chem.
58
3465-3471
2010
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Pitsawong, W.; Sucharitakul, J.; Prongjit, M.; Tan, T.C.; Spadiut, O.; Haltrich, D.; Divne, C.; Chaiyen, P.
A conserved active-site threonine is important for both sugar and flavin oxidations of pyranose 2-oxidase
J. Biol. Chem.
285
9697-9705
2010
Trametes ochracea
Manually annotated by BRENDA team
Tan, T.C.; Pitsawong, W.; Wongnate, T.; Spadiut, O.; Haltrich, D.; Chaiyen, P.; Divne, C.
H-bonding and positive charge at the N5/O4 locus are critical for covalent flavin attachment in trametes pyranose 2-oxidase
J. Mol. Biol.
402
578-594
2010
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Prongjit, M.; Sucharitakul, J.; Palfey, B.A.; Chaiyen, P.
Oxidation mode of pyranose 2-oxidase is controlled by pH
Biochemistry
52
1437-1445
2013
Trametes ochracea
Manually annotated by BRENDA team
Wongnate, T.; Sucharitakul, J.; Chaiyen, P.
Identification of a catalytic base for sugar oxidation in the pyranose 2-oxidase reaction
ChemBioChem
12
2577-2586
2011
Trametes ochracea
Manually annotated by BRENDA team
Wongnate, T.; Chaiyen, P.
The substrate oxidation mechanism of pyranose 2-oxidase and other related enzymes in the glucose-methanol-choline superfamily
FEBS J.
280
3009-3027
2013
Trametes ochracea
Manually annotated by BRENDA team
Decamps, K.; Joye, I.; Haltrich, D.; Nicolas, J.; Courtin, C.; Delcour, J.
Biochemical characteristics of Trametes multicolor pyranose oxidase and Aspergillus niger glucose oxidase and implications for their functionality in wheat flour dough
Food Chem.
131
1485-1492
2012
Trametes ochracea (Q7ZA32), Trametes ochracea MB49 (Q7ZA32)
Manually annotated by BRENDA team
Tan, T.C.; Haltrich, D.; Divne, C.
Regioselective control of beta-D-glucose oxidation by pyranose 2-oxidase is intimately coupled to conformational degeneracy
J. Mol. Biol.
409
588-600
2011
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Taniguchi, S.; Chosrowjan, H.; Wongnate, T.; Sucharitakul, J.; Chaiyen, P.; Tanaka, F.
Ultrafast fluorescence dynamics of flavin adenine dinucleotide in pyranose 2-oxidases variants and their complexes with acetate: conformational heterogeneity with different dielectric constants
J. Photochem. Photobiol. A
245
33-42
2012
Trametes ochracea
-
Manually annotated by BRENDA team
Decamps, K.; Gryp, G.; Joye, I.J.; Courtin, C.M.; Delcour, J.A.
Impact of pyranose oxidase from Trametes multicolor, glucose oxidase from Aspergillus niger and hydrogen peroxide on protein agglomeration in wheat flour gluten-starch separation
Food Chem.
148
235-239
2014
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Decamps, K.; Joye, I.J.; Rakotozafy, L.; Nicolas, J.; Courtin, C.M.; Delcour, J.A.
The bread dough stability improving effect of pyranose oxidase from Trametes multicolor and glucose oxidase from Aspergillus niger: unraveling the molecular mechanism
J. Agric. Food Chem.
61
7848-7854
2013
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Lugsanangarm, K.; Nueangaudom, A.; Kokpol, S.; Pianwanit, S.; Nunthaboot, N.; Tanaka, F.; Taniguchi, S.; Chosrowjan, H.
Heterogeneous subunit structures in the pyranose 2-oxidase homotetramer revealed by theoretical analysis of the rates of photoinduced electron transfer from a tryptophan to the excited flavin
J. Photochem. Photobiol. A
306
469-476
2015
Trametes ochracea (Q7ZA32)
-
Manually annotated by BRENDA team
Brugger, D.; Suetzl, L.; Zahma, K.; Haltrich, D.; Peterbauer, C.K.; Stoica, L.
Electrochemical characterization of the pyranose 2-oxidase variant N593C shows a complete loss of the oxidase function with full preservation of substrate (dehydrogenase) activity
Phys. Chem. Chem. Phys.
18
32072-32077
2016
Trametes ochracea
Manually annotated by BRENDA team
Halada, P.; Brugger, D.; Volc, J.; Peterbauer, C.K.; Leitner, C.; Haltrich, D.
Oxidation of Phe454 in the gating segment inactivates Trametes multicolor pyranose oxidase during substrate turnover
PLoS ONE
11
e0148108
2016
Trametes ochracea
Manually annotated by BRENDA team
Brugger, D.; Krondorfer, I.; Shelswell, C.; Huber-Dittes, B.; Haltrich, D.; Peterbauer, C.K.
Engineering pyranose 2-oxidase for modified oxygen reactivity
PLoS ONE
9
e109242
2014
Trametes ochracea (Q7ZA32)
Manually annotated by BRENDA team
Tan, T.C.; Spadiut, O.; Gandini, R.; Haltrich, D.; Divne, C.
Structural basis for binding of fluorinated glucose and galactose to Trametes multicolor pyranose 2-oxidase variants with improved galactose conversion
PLoS ONE
9
e86736
2014
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team
Abrera, A.; Chang, H.; Kracher, D.; Ludwig, R.; Haltrich, D.
Characterization of pyranose oxidase variants for bioelectrocatalytic applications
Biochim. Biophys. Acta
1868
140335
2020
Trametes ochracea (Q7ZA32), Trametes ochracea
Manually annotated by BRENDA team