Reference on EC 1.1.2.10 - lanthanide-dependent methanol dehydrogenase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Good, N.M.; Vu, H.N.; Suriano, C.J.; Subuyuj, G.A.; Skovran, E.; Martinez-Gomez, N.C.
Pyrroloquinoline quinone ethanol dehydrogenase in Methylobacterium extorquens AM1 extends lanthanide-dependent metabolism to multicarbon substrates
J. Bacteriol.
198
3109-3118
2016
Methylorubrum extorquens (C5AXV8), Methylorubrum extorquens
Versantvoort, W.; Pol, A.; Daumann, L.J.; Larrabee, J.A.; Strayer, A.H.; Jetten, M.S.M.; van Niftrik, L.; Reimann, J.; Op den Camp, H.J.M.
Characterization of a novel cytochrome cGJ as the electron acceptor of XoxF-MDH in the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV
Biochim. Biophys. Acta Proteins Proteom.
1867
595-603
2019
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
Featherston, E.R.; Rose, H.R.; McBride, M.J.; Taylor, E.M.; Boal, A.K.; Cotruvo, J.A.
Biochemical and structural characterization of XoxG and XoxJ and their roles in lanthanide-dependent methanol dehydrogenase activity
ChemBioChem
20
2360-2372
2019
Methylorubrum extorquens, Methylorubrum extorquens (P16027 AND P14775 AND P14774), Methylorubrum extorquens NCIMB 9133 (P16027 AND P14775 AND P14774), Methylorubrum extorquens DSM 1338 (P16027 AND P14775 AND P14774), Methylorubrum extorquens ATCC 14718 (P16027 AND P14775 AND P14774), Methylorubrum extorquens JCM 2805 (P16027 AND P14775 AND P14774)
Bogart, J.A.; Lewis, A.J.; Schelter, E.J.
DFT study of the active site of the XoxF-type natural, cerium-dependent methanol dehydrogenase enzyme
Chemistry
21
1743-1748
2015
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
Prejano, M.; Marino, T.; Russo, N.
How can methanol dehydrogenase from Methylacidiphilum fumariolicum work with the alien CeIII ion in the active center? A theoretical study
Chemistry
23
8652-8657
2017
Methylacidiphilum fumariolicum
Lumpe, H.; Pol, A.; Op den Camp, H.J.M.; Daumann, L.J.
Impact of the lanthanide contraction on the activity of a lanthanide-dependent methanol dehydrogenase - a kinetic and DFT study
Dalton Trans.
47
10463-10472
2018
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
Pol, A.; Barends, T.R.; Dietl, A.; Khadem, A.F.; Eygensteyn, J.; Jetten, M.S.; Op den Camp, H.J.
Rare earth metals are essential for methanotrophic life in volcanic mudpots
Environ. Microbiol.
16
255-264
2014
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
Lv, H.; Sahin, N.; Tani, A.
Isolation and genomic characterization of Novimethylophilus kurashikiensis gen. nov. sp. nov., a new lanthanide-dependent methylotrophic species of Methylophilaceae
Environ. Microbiol.
20
1204-1223
2018
Novimethylophilus kurashikiensis, Novimethylophilus kurashikiensis La2-4T
Wang, L.; Suganuma, S.; Hibino, A.; Mitsui, R.; Tani, A.; Matsumoto, T.; Ebihara, A.; Fitriyanto, N.A.; Pertiwiningrum, A.; Shimada, M.; Hayakawa, T.; Nakagawa, T.
Lanthanide-dependent methanol dehydrogenase from the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium diazoefficiens strain USDA110
Enzyme Microb. Technol.
130
109371
2019
Bradyrhizobium diazoefficiens, Bradyrhizobium diazoefficiens USDA110
Huang, J.; Yu, Z.; Chistoserdova, L.
Lanthanide-dependent methanol dehydrogenases of XoxF4 and XoxF5 clades are differentially distributed among methylotrophic bacteria and they reveal different biochemical properties
Front. Microbiol.
9
1366
2018
Methylotenera mobilis, Methylomonas sp. LW13, Methylotenera mobilis JLW8
De Simone, G.; Polticelli, F.; Aime, S.; Ascenzi, P.
Lanthanides-based catalysis in eukaryotes
IUBMB Life
70
1067-1075
2018
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
De Simone, G.; Polticelli, F.; Aime, S.; Ascenzi, P.
No lanthanides-based catalysis in eukaryotes
IUBMB Life
71
398-399
2019
no activity in eukaryotes
McSkimming, A.; Cheisson, T.; Carroll, P.J.; Schelter, E.J.
Functional synthetic model for the lanthanide-dependent quinoid alcohol dehydrogenase active site
J. Am. Chem. Soc.
140
1223-1226
2018
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SoIV
Vu, H.N.; Subuyuj, G.A.; Vijayakumar, S.; Good, N.M.; Martinez-Gomez, N.C.; Skovran, E.
Lanthanide-dependent regulation of methanol oxidation systems in Methylobacterium extorquens AM1 and their contribution to methanol growth
J. Bacteriol.
198
1250-1259
2016
Methylorubrum extorquens
Chu, F.; Lidstrom, M.E.
XoxF acts as the predominant methanol dehydrogenase in the type I methanotroph Methylomicrobium buryatense
J. Bacteriol.
198
1317-1325
2016
Methylotuvimicrobium buryatense, Methylotuvimicrobium buryatense 5GB1C
Deng, Y.W.; Ro, S.Y.; Rosenzweig, A.C.
Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C
J. Biol. Inorg. Chem.
23
1037-1047
2018
Methylotuvimicrobium buryatense, Methylotuvimicrobium buryatense 5GB1C
Hibi, Y.; Asai, K.; Arafuka, H.; Hamajima, M.; Iwama, T.; Kawai, K.
Molecular structure of La3+-induced methanol dehydrogenase-like protein in Methylobacterium radiotolerans
J. Biosci. Bioeng.
111
547-549
2011
Methylobacterium radiotolerans, Methylobacterium radiotolerans NBRC15690
Zheng, Y.; Huang, J.; Zhao, F.; Chistoserdova, L.
Physiological effect of XoxG(4) on lanthanide-dependent methanotrophy
mBio
9
e02430-17
2018
Methylomonas sp. LW13
Masuda, S.; Suzuki, Y.; Fujitani, Y.; Mitsui, R.; Nakagawa, T.; Shintani, M.; Tani, A.
Lanthanide-dependent regulation of methylotrophy in Methylobacterium aquaticum strain 22A
mSphere
3
e00462-17
2018
Methylobacterium aquaticum, Methylobacterium aquaticum 22A
Nakagawa, T.; Mitsui, R.; Tani, A.; Sasa, K.; Tashiro, S.; Iwama, T.; Hayakawa, T.; Kawai, K.
A catalytic role of XoxF1 as La3+-dependent methanol dehydrogenase in Methylobacterium extorquens strain AM1
PLoS ONE
7
e50480
2012
Methylorubrum extorquens
Good, N.M.; Moore, R.S.; Suriano, C.J.; Martinez-Gomez, N.C.
Contrasting in vitro and in vivo methanol oxidation activities of lanthanide-dependent alcohol dehydrogenases XoxF1 and ExaF from Methylobacterium extorquens AM1
Sci. Rep.
9
4248
2019
Methylorubrum extorquens
Versantvoort, W.; Pol, A.; Daumann, L.J.; Larrabee, J.A.; Strayer, A.H.; Jetten, M.S.M.; van Niftrik, L.; Reimann, J.; Op den Camp, H.J.M.
Characterization of a novel cytochrome cGJ as the electron acceptor of XoxF-MDH in the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV
Biochim. Biophys. Acta
1867
595-603
2019
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
Kalimuthu, P.; Daumann, L.J.; Pol, A.; Op den Camp, H.J.M.; Bernhardt, P.V.
Electrocatalysis of a europium-dependent bacterial methanol dehydrogenase with its physiological electron-acceptor cytochrome cGJ
Chemistry
25
8760-8768
2019
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
Picone, N.; Op den Camp, H.J.
Role of rare earth elements in methanol oxidation
Curr. Opin. Chem. Biol.
49
39-44
2019
Bradyrhizobium sp., Methylotenera mobilis, Methylacidiphilum fumariolicum, Methylomonas sp. LW13, Methylobacterium aquaticum (A0A0C6F7V8), Methylotuvimicrobium buryatense (A0A3F2YLY8), Methylorubrum extorquens (C5B120), Methylacidiphilum fumariolicum SolV, Methylobacterium aquaticum 22A (A0A0C6F7V8), Methylotuvimicrobium buryatense 5G (A0A3F2YLY8), Methylotenera mobilis JLW8
Wang, L.; Hibino, A.; Suganuma, S.; Ebihara, A.; Iwamoto, S.; Mitsui, R.; Tani, A.; Shimada, M.; Hayakawa, T.; Nakagawa, T.
Preference for particular lanthanide species and thermal stability of XoxFs in Methylorubrum extorquens strain AM1
Enzyme Microb. Technol.
136
109518
2020
Methylorubrum extorquens (C5B120), Methylorubrum extorquens
Roszczenko-Jasinska, P.; Krucon, T.; Stasiuk, R.; Matlakowska, R.
Occurrence of XoxF-type methanol dehydrogenases in bacteria inhabiting light lanthanide-rich shale rock
FEMS Microbiol. Ecol.
97
fiaa259
2021
Hyphomicrobium zavarzinii, Methyloferula stellata, Rhodospirillales bacterium, Methyloceanibacter caenitepidi (A0A0A8JZD4), Methyloceanibacter caenitepidi (A0A0A8K0T2), Methyloceanibacter caenitepidi (A0A0A8K4A4), Methyloceanibacter stevinii (A0A1E3VNN9), Paracoccus yeei (A0A1V0GRH2), Methylibium petroleiphilum (A2SLA7), Rhodobacter sp. SW2 (C8S0N8), Candidatus Filomicrobium marinum (CFX30213.1), Hyphomicrobium sp. (F8JBP2), Advenella kashmirensis (I3UDT0), Hyphomicrobium denitrificans (N0B5Z3), Hyphomicrobium denitrificans (N0B8G3), Hyphomicrobium nitrativorans (V5SGT2), Bradyrhizobium sp. (WP 024520589.1), Methylobacterium sp. GXF4 (WP_007560853.1), Methylotenera mobilis (WP_019899159.1), Mesorhizobium sp. LSJC280B00 (X5Q003), Advenella kashmirensis DSM 17095 (I3UDT0), Hyphomicrobium denitrificans 1NES1 (N0B5Z3), Hyphomicrobium denitrificans 1NES1 (N0B8G3), Bradyrhizobium sp. Tv2a-2 (WP 024520589.1), Hyphomicrobium sp. MC1 (F8JBP2), Rhodospirillales bacterium URHD0088, Hyphomicrobium zavarzinii 1NES1, Hyphomicrobium nitrativorans NL23 (V5SGT2)
Good, N.M.; Fellner, M.; Demirer, K.; Hu, J.; Hausinger, R.P.; Martinez-Gomez, N.C.
Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function
J. Biol. Chem.
295
8272-8284
2020
Methylorubrum extorquens (C5B120)
Jahn, B.; Jonasson, N.S.W.; Hu, H.; Singer, H.; Pol, A.; Good, N.M.; den Camp, H.J.M.O.; Martinez-Gomez, N.C.; Daumann, L.J.
Understanding the chemistry of the artificial electron acceptors PES, PMS, DCPIP and Wursters Blue in methanol dehydrogenase assays
J. Biol. Inorg. Chem.
25
199-212
2020
Methylacidiphilum fumariolicum, Methylorubrum extorquens (C5B120), Methylacidiphilum fumariolicum SolV
Pastawan, V.; Suganuma, S.; Mizuno, K.; Wang, L.; Tani, A.; Mitsui, R.; Nakamura, K.; Shimada, M.; Hayakawa, T.; Fitriyanto, N.A.; Nakagawa, T.
Regulation of lanthanide-dependent methanol oxidation pathway in the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium sp. strain Ce-3
J. Biosci. Bioeng.
130
582-587
2020
Bradyrhizobium sp. MAFF 211645 (A0A7G1H3Z0)
Friedman, R.
Preferential binding of lanthanides to methanol dehydrogenase evaluated with density functional theory
J. Phys. Chem. B
125
2251-2257
2021
Methylotuvimicrobium buryatense (A0A3F2YLY8), Methylotuvimicrobium buryatense 5G (A0A3F2YLY8)
Featherston, E.R.; Mattocks, J.A.; Tirsch, J.L.; Cotruvo, J.A.
Heterologous expression, purification, and characterization of proteins in the lanthanome
Methods Enzymol.
650
119-157
2021
Methylorubrum extorquens (P16027 AND P14775 AND P14774), Methylorubrum extorquens NCIMB 9133 (P16027 AND P14775 AND P14774), Methylorubrum extorquens DSM 1338 (P16027 AND P14775 AND P14774), Methylorubrum extorquens ATCC 14718 (P16027 AND P14775 AND P14774), Methylorubrum extorquens JCM 2805 (P16027 AND P14775 AND P14774)
Huang, J.; Zheng, Y.; Groom, J.; Yu, Z.; Chistoserdova, L.
Expression, purification and properties of the enzymes involved in lanthanide-dependent alcohol oxidation XoxF4, XoxF5, ExaF/PedH, and XoxG4
Methods Enzymol.
650
81-96
2021
Methylorubrum extorquens, Sinorhizobium meliloti, Bradyrhizobium diazoefficiens, Methylotenera mobilis, Methylomonas sp. LW13, Grimontia marina, Rhodovulum kholense, Tistlia consotensis, Methyloversatilis discipulorum (B2LME2), Bradyrhizobium diazoefficiens USDA 110, Sinorhizobium meliloti 5A14, Grimontia marina CECT 8713, Methyloversatilis discipulorum FAM1 (B2LME2), Methylotenera mobilis JLW8, Tistlia consotensis DSM 21585, Rhodovulum kholense DSM 19783
Yanpirat, P.; Nakatsuji, Y.; Hiraga, S.; Fujitani, Y.; Izumi, T.; Masuda, S.; Mitsui, R.; Nakagawa, T.; Tani, A.
Lanthanide-dependent methanol and formaldehyde oxidation in Methylobacterium aquaticum strain 22A
Microorganisms
8
822
2020
Methylobacterium aquaticum (A0A0C6F7V8), Methylobacterium aquaticum, Methylobacterium aquaticum 22A (A0A0C6F7V8)
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