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Information on EC 1.1.1.67 - mannitol 2-dehydrogenase and Organism(s) Pseudomonas fluorescens and UniProt Accession O08355

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Pseudomonas fluorescens
UNIPROT: O08355 not found.
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Word Map
The taxonomic range for the selected organisms is: Pseudomonas fluorescens
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria, Archaea
Reaction Schemes
Synonyms
pfmdh, mannitol 2-dehydrogenase, mannitol-2-dehydrogenase, nadh-dependent mannitol dehydrogenase, nad+-dependent mannitol dehydrogenase, psm2dh, tm0298, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
mannitol 2-dehydrogenase
-
mannitol dehydrogenase
-
D-mannitol dehydrogenase
mannitol dehydrogenase
-
-
-
-
NADH-dependent mannitol dehydrogenase
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
D-mannitol + NAD+ = D-fructose + NADH + H+
show the reaction diagram
the oxyanion hole of mannitol 2-dehydrogenase drives a precatalytic conformational equilibrium at the ternary complex level in which the reactive group of the substrate is activated for chemical conversion through its precise alignment with the unprotonated side chain of Lys295 in mannitol oxidation and C=O bond polarization by the carboxamide moieties of Asn191 and Asn300 in fructose reduction. In the subsequent hydride transfer step, the two asparagine residues provide about 40 kJ/mol of electrostatic stabilization
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
-
oxidation
-
-
-
-
reduction
-
-
-
-
PATHWAY SOURCE
PATHWAYS
-
-
SYSTEMATIC NAME
IUBMB Comments
D-mannitol:NAD+ 2-oxidoreductase
-
CAS REGISTRY NUMBER
COMMENTARY hide
9001-65-4
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
D-arabitol + NAD+
?
show the reaction diagram
-
-
-
?
D-fructose + NADH + H+
D-mannitol + NAD+
show the reaction diagram
D-mannitol + NAD(P)+
D-fructose + NAD(P)H + H+
show the reaction diagram
-
-
-
r
D-mannitol + NAD+
D-fructose + NADH + H+
show the reaction diagram
meso-erythritol + NAD+
?
show the reaction diagram
-
-
-
?
arabitol + NAD(P)+
? + NAD(P)H
show the reaction diagram
-
-
-
-
?
D-fructose + NAD(P)+
? + NAD(P)H
show the reaction diagram
-
-
-
-
?
D-fructose + NADH + H+
D-mannitol + NAD+
show the reaction diagram
D-mannitol + NAD+
D-fructose + NADH + H+
show the reaction diagram
isomaltulose + NAD(P)+
? + NAD(P)H
show the reaction diagram
-
-
-
-
?
sorbitol + NAD(P)+
? + NAD(P)H
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
D-fructose + NADH + H+
D-mannitol + NAD+
show the reaction diagram
-
-
-
r
D-mannitol + NAD+
D-fructose + NADH + H+
show the reaction diagram
D-mannitol + NAD+
D-fructose + NADH + H+
show the reaction diagram
-
-
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADP+
400fold preference of the enzyme for NAD+ as compared to NADP+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
20.36 - 176.9
D-arabitol
0.24 - 22
D-fructose
0.3 - 1187
D-mannitol
1800
meso-erythritol
0.001 - 0.775
NAD+
0.0033 - 0.067
NADH
0.44 - 25
D-fructose
0.4 - 1.2
D-mannitol
0.093
NAD+
-
in 50 mM glycine/NaOH buffer at pH 10.0
0.01 - 0.15
NADH
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0013 - 7.3
D-arabitol
0.15 - 61
D-fructose
0.00055 - 15.9
D-mannitol
0.0012 - 0.599
meso-erythritol
3 - 24
NAD(P)H
0.04 - 40
NAD+
0.00045 - 61
NADH
20
D-fructose
-
in 50 mM glycine/NaOH buffer at pH 10.0
40
D-mannitol
-
in 50 mM glycine/NaOH buffer at pH 10.0
20
NAD+
-
recombinant protein
54
NADH
-
recombinant protein
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.000014 - 0.118
D-arabitol
0.000026 - 250
D-fructose
0.000015 - 100
D-mannitol
0.0000021 - 0.0018
meso-erythritol
0.0024 - 400
NAD+
0.019 - 910
NADH
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.003 - 0.08
NAD+
0.061 - 0.08
NADH
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
46
-
histidine-tagged recombinant protein
63
-
MDH expressed in Escherichia coli strain BL21 (DE3) plysS, with fructose as substrate
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8
assay at, both reaction directions
7
-
D-fructose reduction, recombinant protein
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
O08355_PSEFL
493
0
54498
TrEMBL
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
55000
x * 55000, SDS-PAGE
45000
-
recombinant protein, gel filtration
54000
54490
-
calculated from gene sequence
55000
-
x * 55000, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 55000, SDS-PAGE
?
-
x * 55000, SDS-PAGE
monomer
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion method, binary complex of selenomethionine substituted proteins with NAD(H) and a ternary complex with NAD(H) and D-mannitol have been determined to resolutions of 1.7 and 1.8 A respectively
-
hanging drop vapor diffusion method, binary complex with NAD+ and ternary complex with NAD+ and D-mannitol have been determined to resolutions of 1.7 and 1.8 A and R-factors of 0.171 and 0.176 respectively
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PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D230A
the mutant shows reduced catalytic efficiency compared to the wild type enzyme
E133A
the mutant shows reduced catalytic efficiency compared to the wild type enzyme
E133Q
the mutant shows reduced catalytic efficiency compared to the wild type enzyme
E292A
mutation partially disrupts the catalytic cycle. Role for residue Glu292 as a gate in a water chain mechanism of proton translocation. Removal of gatekeeper control in the E292A mutant results in a selective, up to 120fold slowing down of microscopicsteps immediately preceding catalytic oxidation of mannitol, consistent with the notion that formation of the productive enzyme-NAD-mannitol complex is promoted by a corresponding position change of Glu292
E68K
site-directed mutagenesis, the mutant shows an altered cofactor specificity compared to the wild-type enzyme, which is switched to NADP(H), EC 1.1.1.138, NADP(H) is preferred by 10fold over NAD(H)
E68K/D69A
shows about a 10fold preference for NADP(H) over NAD(H), accompanied by a small decrease in catalytic efficiency for NAD(H)-dependent reactions as compared to wild-type enzyme
H303A
the mutant shows severely reduced catalytic efficiency compared to the wild type enzyme
H303A/R373A/K381A
the mutant shows severely reduced catalytic efficiency compared to the wild type enzyme
K381A
the mutant shows severely reduced catalytic efficiency compared to the wild type enzyme
N191A
N191A/N300A
the rate constants for the overall hydride transfer to and from C-2 of mannitol are selectively slowed, with additive effects in the double mutant
N191D
the internal equilibrium of enzyme-NADH-fructose and enzyme-NAD+-mannitol is altered 10000- to 100000fold from being balanced in the wild-type enzyme to favoring enzyme-NAD+-mannitol in the single site mutants, N191D and N300D. N191D and N300D appear to lose fructose binding affinity due to deprotonation of the respective Asp above apparent pK values of 5.3  0.1 and 6.3  0.2, respectively
N191D/N300D
mutant behaves as a slow fructose reductase at pH 5.2, lacking measurable activity for mannitol oxidation in the pH range 6.8-10
N191L
the rate constants for the overall hydride transfer to and from C-2 of mannitol are selectively slowed, between 540- and 2700fold. Partial disruption of the oxyanion hole in the single-site mutant causes an upshift, by about 1.2 pH units, in the kinetic pK of the catalytic acid-base Lys295 in the enzyme–NAD+-mannitol complex
N300A
the mutant shows severely reduced catalytic efficiency compared to the wild type enzyme
N300D
N300S
the mutant shows severely reduced catalytic efficiency compared to the wild type enzyme
R373A
the mutant shows severely reduced catalytic efficiency compared to the wild type enzyme
H303A
-
mutant enzyme displays catalytic efficiency for NAD+-dependent oxidation of D-mannitol 300fold below the wild-type value
K295A
K295M
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2000000fold lower turnover number for D-mannitol oxidation at pH 10.0 than the wild-type enzyme
N300A
-
mutant enzyme displays catalytic efficiency for NAD+-dependent oxidation of D-mannitol 1000fold below the wild-type value
additional information
application of a modular screening procedure that can identify the optimal operating policy of an enzymatic reactor, which minimizes the enzyme consumption, given the process kinetic model, and an imposed production capacity. Following an optimization procedure, the process effectiveness is evaluated in a systematic approach, by including simple batch reactor (BR), batch with intermittent addition of the key-enzyme following certain optimal policies (BRP). The enzymatic reduction of D-fructose to mannitol is used as a model system utilizing suspended MDH (mannitol dehydrogenase) and NADH (nicotinamide adenine dinucleotide) cofactor, with the in-situ continuous regeneration of the cofactor by the expense of formate degradation in the presence of suspended FDH (formate dehydrogenase). The NADH-dependent FDH and MDH typical activity in D-fructose reduction is of 1-2 U/ml in a batch reactor
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
HisPur cobalt resin column chromatography
mutants purified to apparent homogeneity
recombinant enzyme from Escherichia coli strain JM109
by Ni2+-NTA affinity chromatography
-
histidine-tagged recombinant protein, expressed in Escherichia coli
-
recombinant protein
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
expressed in Escherichia coli BLR(DE3) cells
expression in Escherichia coli
expression of wild-type and mutant enzymes in Escherichia coli strain JM109
gene mtlD, recombinant overexpression of the enzyme in Escherichia coli strain JM109
expression in Escherichia coli
-
expression of wild-type enzyme and mutant enzymes in Escherichia coli
-
subcloned into vector pDEST110 and overexpressed in different strains of Escherichia coli (BL21 (DE3) plysS, JM109, Origami(DE3) or M15)
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APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
industry
redox balancing between the intracellular NADP(H) and NAD(H) based on NAD(P)(H)-dependent interconversion of mannitol and fructose by M2DH may be a useful strategy of metabolic engineering
synthesis
mannitol is a natural hexitol with important applications in medicine and food industry. Development of a production method on an industrial scale, optimization and evaluation of production in a batch reactor (BR, or BRP operation) for a complex bi-enzymatic system with suspended enzymes and cofactor regeneration, method modeling, molecular calculations and simulations, detailed overview
industry
-
best strain for expression of MDH in both laboratory and industrial applications is Escherichia coli BL21 (DE3) plysS
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Yamanaka, K.; Sakai, S.
Production of polyol dehydrogenases in bacteria
Can. J. Microbiol.
14
391-396
1968
Lactobacillus gayonii, Lactobacillus pentoaceticus, Leuconostoc mesenteroides, Levilactobacillus brevis, Pseudomonas aeruginosa, Pseudomonas coronafaciens, Pseudomonas fluorescens, Sarcina aurantiaca, Sarcina marginata
Manually annotated by BRENDA team
Slatner, M.; Nagl, G.; Haltrich, D.; Kulbe, K.D.; Nidetzky, B.
Enzymic synthesis of mannitol: reaction engineering for a recombinant mannitol dehydrogenase
Ann. N. Y. Acad. Sci.
864
450-453
1998
Pseudomonas fluorescens
Manually annotated by BRENDA team
Slatner, M.; Nidetzky, B.; Kulbe, K.D.
Kinetic study of the catalytic mechanism of mannitol dehydrogenase from Pseudomonas fluorescens
Biochemistry
38
10489-10498
1999
Pseudomonas fluorescens
Manually annotated by BRENDA team
Brunker, P.; Altenbuchner, J.; Kulbe, K.D.; Mattes, R.
Cloning, nucleotide sequence and expression of a mannitol dehydrogenase gene from Pseudomonas fluorescens DSM 50106 in Escherichia coli
Biochim. Biophys. Acta
1351
157-167
1997
Pseudomonas fluorescens
Manually annotated by BRENDA team
Klimacek, M.; Nidetzky, B.
A catalytic consensus motif for D-mannitol 2-dehydrogenase, a member of a polyol-specific long-chain dehydrogenase family, revealed by kinetic characterization of site-directed mutants of the enzyme from Pseudomonas fluorescens
Biochem. J.
367
13-18
2002
Pseudomonas fluorescens
Manually annotated by BRENDA team
Klimacek, M.; Kavanagh, K.L.; Wilson, D.K.; Nidetzky, B.
On the role of Bronsted catalysis in Pseudomonas fluorescens mannitol 2-dehydrogenase
Biochem. J.
375
141-149
2003
Pseudomonas fluorescens
Manually annotated by BRENDA team
Kavanagh, K.L.; Klimacek, M.; Nidetzky, B.; Wilson, D.K.
Crystal structure of Pseudomonas fluorescens mannitol 2-dehydrogenase: evidence for a very divergent long-chain dehydrogenase family
Chem. Biol. Interact.
143-144
551-558
2003
Pseudomonas fluorescens
Manually annotated by BRENDA team
Kavanagh, K.L.; Klimacek, M.; Nidetzky, B.; Wilson, D.K.
Crystal structure of Pseudomonas fluorescens mannitol 2-dehydrogenase binary and ternary complexes. Specificity and catalytic mechanism
J. Biol. Chem.
277
43433-43442
2002
Pseudomonas fluorescens
Manually annotated by BRENDA team
Klimacek, M.; Nidetzky, B.
Examining the relative timing of hydrogen abstraction steps during NAD+-dependent oxidation of secondary alcohols catalyzed by long-chain D-mannitol dehydrogenase from Pseudomonas fluorescens using pH and kinetic isotope effects
Biochemistry
41
10158-10165
2002
Pseudomonas fluorescens
Manually annotated by BRENDA team
Bubner, P.; Klimacek, M.; Nidetzky, B.
Structure-guided engineering of the coenzyme specificity of Pseudomonas fluorescens mannitol 2-dehydrogenase to enable efficient utilization of NAD(H) and NADP(H)
FEBS Lett.
582
233-237
2008
Pseudomonas fluorescens (O08355), Pseudomonas fluorescens
Manually annotated by BRENDA team
Haghighatian, M.; Mofid, M.R.; Nekouei, M.K.; Yaghmaei, P.; Tafreshi, A.H.
Isomalt production by cloning, purifying and expressing of the MDH gene from Pseudomonas fluorescens DSM 50106 in different strains of E. coli
Pak. J. Biol. Sci.
11
2001-2006
2008
Pseudomonas fluorescens
Manually annotated by BRENDA team
Klimacek, M.; Nidetzky, B.
The oxyanion hole of Pseudomonas fluorescens mannitol 2-dehydrogenase: a novel structural motif for electrostatic stabilization in alcohol dehydrogenase active sites
Biochem. J.
425
455-463
2010
Pseudomonas fluorescens (O08355), Pseudomonas fluorescens
Manually annotated by BRENDA team
Klimacek, M.; Nidetzky, B.
From alcohol dehydrogenase to a "one-way" carbonyl reductase by active-site redesign: a mechanistic study of mannitol 2-dehydrogenase from Pseudomonas fluorescens
J. Biol. Chem.
285
30644-30653
2010
Pseudomonas fluorescens (O08355), Pseudomonas fluorescens
Manually annotated by BRENDA team
Klimacek, M.; Brunsteiner, M.; Nidetzky, B.
Dynamic mechanism of proton transfer in mannitol 2-dehydrogenase from Pseudomonas fluorescens: mobile GLU292 controls proton relay through a water channel that connects the active site with bulk solvent
J. Biol. Chem.
287
6655-6667
2012
Pseudomonas fluorescens (O08355), Pseudomonas fluorescens
Manually annotated by BRENDA team
Lucas, J.; Siegel, J.
Erratum: Quantitative functional characterization of conserved molecular interactions in the active site of mannitol 2-dehydrogenase
Protein Sci.
24
936-945
2015
Pseudomonas fluorescens (O08355), Pseudomonas fluorescens
Manually annotated by BRENDA team
Crisan, M.; Maria, G.
Modular simulation to determine the optimal operating policy of a batch reactor for the enzymatic fructose reduction to mannitol with the in situ continuous enzymatic regeneration of the NAD cofactor
Rev. Chim.
68
2196-2203
2017
Pseudomonas fluorescens (O08355), Pseudomonas fluorescens DSM 50106 (O08355)
-
Manually annotated by BRENDA team