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EC Tree
IUBMB CommentsThe enzyme from the bacterium Escherichia coli is specific for 5-dehydro-D-gluconate. cf. EC 1.1.1.366, L-idonate 5-dehydrogenase (NAD+).
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
l-idndh, l-idonate dehydrogenase, l-idonate 5-dehydrogenase,
more
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EC 1.1.1.128
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formerly
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idonate 5-dehydrogenase
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GluE

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L-IdnDH

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L-idonate dehydrogenase

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L-idonate dehydrogenase
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L-idonate dehydrogenase
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L-idonate + NAD(P)+ = 5-dehydro-D-gluconate + NAD(P)H + H+
The enzyme from E. coli cannot oxidize D-gluconate to form 5-dehydrogluconate, a reaction that is catalysed by EC 1.1.1.69, gluconate 5-dehydrogenase
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L-idonate:NAD(P)+ oxidoreductase
The enzyme from the bacterium Escherichia coli is specific for 5-dehydro-D-gluconate. cf. EC 1.1.1.366, L-idonate 5-dehydrogenase (NAD+).
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5-dehydro-D-gluconate + NADH + H+
L-idonate + NAD+
5-keto-D-fructose + NADP+
? + NADPH
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low activity
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?
D-gluconate + NADP+
? + NADPH
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r
L-idonate + NAD(P)+
5-dehydrogluconate + NAD(P)H
specific oxidation of L-idonate with NAD+ as cofactor, involved in the degradation of L-idonate to form D-gluconate
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r
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
5-dehydro-D-gluconate + NADH + H+

L-idonate + NAD+
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?
5-dehydro-D-gluconate + NADH + H+
L-idonate + NAD+
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?
5-dehydro-D-gluconate + NADH + H+
L-idonate + NAD+
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?
L-idonate + NAD+

5-dehydro-D-gluconate + NADH + H+
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme is part of the D-glucuronic acid catabolism
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme has a strict requirement for NAD+/NADH
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme is part of the D-glucuronic acid catabolism
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme has a strict requirement for NAD+/NADH
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme is part of the D-glucuronic acid catabolism
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme has a strict requirement for NAD+/NADH
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?
L-idonate + NADP+

5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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i.e. 5-keto-D-gluconic acid
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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the enzyme is involved in the biosynthesis of L-tartaric acid from ascorbic acid, pathway overview
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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highly specific for L-idonate
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
Gluconobacter gluconicus
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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i.e. 5-keto-D-gluconic acid
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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the enzyme is involved in the biosynthesis of L-tartaric acid from ascorbic acid, pathway overview
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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i.e. 5-keto-D-gluconic acid
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
the enzyme is involved in the biosynthesis of L-tartaric acid from ascorbic acid, pathway overview
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r
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L-idonate + NAD(P)+
5-dehydrogluconate + NAD(P)H
specific oxidation of L-idonate with NAD+ as cofactor, involved in the degradation of L-idonate to form D-gluconate
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r
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
L-idonate + NAD+

5-dehydro-D-gluconate + NADH + H+
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the enzyme is part of the D-glucuronic acid catabolism
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme is part of the D-glucuronic acid catabolism
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?
L-idonate + NAD+
5-dehydro-D-gluconate + NADH + H+
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the enzyme is part of the D-glucuronic acid catabolism
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?
L-idonate + NADP+

5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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the enzyme is involved in the biosynthesis of L-tartaric acid from ascorbic acid, pathway overview
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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highly specific for L-idonate
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
Gluconobacter gluconicus
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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role in the control of the intracellular concentration of gluconate
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?
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
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the enzyme is involved in the biosynthesis of L-tartaric acid from ascorbic acid, pathway overview
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r
L-idonate + NADP+
5-dehydro-D-gluconate + NADPH
the enzyme is involved in the biosynthesis of L-tartaric acid from ascorbic acid, pathway overview
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r
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NAD+

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strict requirement for NAD+/NADH as cofactors
NAD+
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the enzyme has a strict requirement for NAD+/NADH
NADH

preferred cofactor
NADH
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strict requirement for NAD+/NADH as cofactors
NADH
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the enzyme has a strict requirement for NAD+/NADH
NADP+

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NADPH

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NADPH
Gluconobacter gluconicus
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NADPH
less effective than NAD+
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Mn2+
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slight activation at 1 mM
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Cu2+

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strong inhibition at 1 mM
p-chloromercuribenzoate

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strong inhibition at 0.01 mM
p-chloromercuribenzoate
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8.4 - 12.5
5-Dehydro-D-gluconate
0.9 - 1.1
5-Keto-D-gluconate
8.4
5-Dehydro-D-gluconate

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pH 8, temperature not specified in the publication
8.4
5-Dehydro-D-gluconate
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pH 7, temperature not specified in the publication
12.5
5-Dehydro-D-gluconate
pH 8.5, 30°C, recombinant enzyme
0.9
5-Keto-D-gluconate

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1.1
5-Keto-D-gluconate
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1
L-Idonate

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2.2
L-Idonate
pH 5.4, 30°C, recombinant enzyme
30.9
L-Idonate
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pH 8, temperature not specified in the publication
30.9
L-Idonate
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pH 7, temperature not specified in the publication
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7.2
5-Dehydro-D-gluconate
7.2
5-Dehydro-D-gluconate

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pH 8, temperature not specified in the publication
7.2
5-Dehydro-D-gluconate
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pH 7, temperature not specified in the publication
5.5
L-Idonate

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pH 8, temperature not specified in the publication
5.5
L-Idonate
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pH 7, temperature not specified in the publication
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0.857
5-Dehydro-D-gluconate
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pH 7, temperature not specified in the publication
0.178
L-Idonate
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pH 8, temperature not specified in the publication
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0.04
with NADPH as cofactor
0.05
with NADH as cofactor
additional information
in vivo activity, feeding experiments, overview
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10
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D-gluconate oxidation
5.5
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5-keto-D-gluconate reduction
6.5 - 7.4
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L-idonate formation
5.4

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forward, oxidation reaction
5.4
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forward, oxidation reaction
5.4
forward, oxidation reaction
8.5

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reverse, reduction reaction
8.5
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reverse, reduction reaction
8.5
reverse, reduction reaction
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30

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assay at
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K-12 strains, idnD gene
Uniprot
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strain no. 125
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Gluconobacter gluconicus
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no activity in Ampelopsis aconitifolia
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cv. Cabernet Sauvignon
SwissProt
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induction of enzyme synthesis by L-idonate containing culture medium
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Gluconobacter gluconicus
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young
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young
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young
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metabolism

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the enzyme is part of the D-glucuronic acid catabolism
metabolism
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the enzyme is part of the D-glucuronic acid catabolism
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metabolism
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the enzyme is part of the D-glucuronic acid catabolism
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physiological function

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GluE deletion results in reduced growth and cessation of the D-glucuronic acid catabolism
physiological function
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GluE deletion results in reduced growth and cessation of the D-glucuronic acid catabolism
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physiological function
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GluE deletion results in reduced growth and cessation of the D-glucuronic acid catabolism
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25000
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4 * 25000, SDS-PAGE
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tetramer
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4 * 25000, SDS-PAGE
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55% ammonium sulfate precipitation
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5 - 6
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80% of maximal activity within
285823
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50
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complete inactivation within 5 min
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highly unstable, 75% loss of activity within a few days, stabilizing agents during purification: D-gluconate, 5-keto-D-gluconate
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-20°C, loss of activity within 1 week
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recombinant enzyme from Escherichia coli strain BL21(DE3)
to homogeneity, crystalline, chromatography techniques
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recombinant enzyme from Escherichia coli strain BL21(DE3)

recombinant enzyme from Escherichia coli strain BL21(DE3)
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recombinant enzyme from Escherichia coli strain BL21(DE3)
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expression in Escherichia coli TOP10 cells
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expression in Saccharomyces cerevisiae
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gene 1029130, DNA and amino acid sequence determination and analysis, expression in Escherichia coli strain BL21(DE3)
overexpression in Escherichia coli
gene 1029130, DNA and amino acid sequence determination and analysis, expression in Escherichia coli strain BL21(DE3)

gene 1029130, DNA and amino acid sequence determination and analysis, expression in Escherichia coli strain BL21(DE3)
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gene 1029130, DNA and amino acid sequence determination and analysis, expression in Escherichia coli strain BL21(DE3)
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Bausch, C.; Peekhaus, N.; Utz, C.; Blais, T.; Murray, E.; Lowary, T.; Conway, T.
Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for L-idonate acid catabolism in Escherichia coli
J. Bacteriol.
180
3704-3710
1998
Escherichia coli (P39346), Escherichia coli
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Chiyonobu, T.; Shinagawa, E.; Adachi, O.; Ameyama, M.
Distribution of 2-ketogluconate reductase and 5-ketogluconate reductase in acetic acid bacteria
Agric. Biol. Chem.
39
2425-2427
1975
Acetobacter aceti, Frateuria aurantia, Gluconobacter oxydans, Gluconobacter albidus, Gluconobacter cerinus, Gluconobacter gluconicus, Gluconacetobacter liquefaciens, Gluconobacter roseus, Gluconobacter sphaericus
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Adachi, O.; Shinagawa, E.; Matsushita, K.; Ameyama, M.
Crystallization and properties of 5-keto-D-gluconate reductase from Gluconobacter suboxydans
Agric. Biol. Chem.
43
75-83
1979
Gluconobacter oxydans
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Takagi, Y.
A new enzyme, 5-ketoglucono-idono-reductase
Agric. Biol. Chem.
26
719-720
1962
Fusarium sp.
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DeBolt, S.; Cook, D.R.; Ford, C.M.
L-tartaric acid synthesis from vitamin C in higher plants
Proc. Natl. Acad. Sci. USA
103
5608-5613
2006
Vitis californica, Ampelopsis glandulosa var. brevipedunculata, no activity in Ampelopsis aconitifolia, Vitis vinifera (Q1PSI9)
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Kuivanen, J.; Arvas, M.; Richard, P.
Clustered genes encoding 2-keto-L-gulonate reductase and L-idonate 5-dehydrogenase in the novel fungal D-glucuronic acid pathway
Front. Microbiol.
8
225
2017
Aspergillus niger, Aspergillus niger ATCC 1015
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