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Information on Organism Riftia pachyptila

Synonyms:
giant tube worm; Riftia pachyptila Jones, 1981; Riftia pachyptila; tube worm;
TaxTree of Organism Riftia pachyptila
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Opisthokonta can be found in Brenda BRENDA pathways(clade)
Metazoa can be found in Brenda BRENDA pathways(kingdom)
Eumetazoa can be found in Brenda BRENDA pathways(clade)
Bilateria can be found in Brenda BRENDA pathways(clade)
Protostomia can be found in Brenda BRENDA pathways(clade)
Spiralia can be found in Brenda BRENDA pathways(clade)
Lophotrochozoa can be found in Brenda BRENDA pathways(clade)
Annelida can be found in Brenda BRENDA pathways(phylum)
Polychaeta can be found in Brenda BRENDA pathways(class)
Sedentaria can be found in Brenda (subclass)
Canalipalpata can be found in Brenda (infraclass)
Sabellida can be found in Brenda BRENDA pathways(order)
Siboglinidae can be found in Brenda BRENDA pathways(family)
Riftia can be found in Brenda BRENDA pathways(genus)
Riftia pachyptila can be found in Brenda BRENDA pathways(species)
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
2-nitrotoluene degradation
-
-
PWY-5641
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
4-aminobutanoate degradation V
-
-
PWY-5022
acetyl-CoA biosynthesis from citrate
-
-
PWY-5172
adenosine nucleotides degradation I
-
-
PWY-6596
adenosine nucleotides degradation II
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-
SALVADEHYPOX-PWY
adenosine ribonucleotides de novo biosynthesis
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-
PWY-7219
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic toluene degradation
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-
alanine metabolism
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-
Alanine, aspartate and glutamate metabolism
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-
Amino sugar and nucleotide sugar metabolism
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-
ammonia assimilation cycle I
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-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
-
-
AMMASSIM-PWY
ammonia oxidation II (anaerobic)
-
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
Arachidonic acid metabolism
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-
arachidonic acid metabolism
-
-
Arginine and proline metabolism
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-
Arginine biosynthesis
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-
arginine dependent acid resistance
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PWY0-1299
arginine metabolism
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-
arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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-
PWY-7429
assimilatory sulfate reduction II
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-
SULFMETII-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
assimilatory sulfate reduction IV
-
-
PWY1ZNC-1
ATP biosynthesis
-
-
PWY-7980
Benzoate degradation
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-
beta-Alanine metabolism
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-
Bifidobacterium shunt
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-
P124-PWY
Biosynthesis of secondary metabolites
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-
C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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-
PWY-7117
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
canavanine biosynthesis
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-
PWY-5
Carbon fixation in photosynthetic organisms
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-
Carbon fixation pathways in prokaryotes
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-
catechol degradation to 2-hydroxypentadienoate I
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-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
chitin degradation I (archaea)
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-
PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
Chlorocyclohexane and chlorobenzene degradation
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-
Citrate cycle (TCA cycle)
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-
citric acid cycle
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-
CO2 fixation into oxaloacetate (anaplerotic)
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-
PWYQT-4429
creatine phosphate biosynthesis
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-
PWY-6158
cyanate degradation
D-Amino acid metabolism
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-
denitrification
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dissimilatory sulfate reduction I (to hydrogen sufide))
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-
DISSULFRED-PWY
Drug metabolism - other enzymes
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-
Entner-Doudoroff pathway I
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-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis IV (engineered)
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PWY-7126
Fe(II) oxidation
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PWY-6692
formaldehyde assimilation II (assimilatory RuMP Cycle)
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-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
Fructose and mannose metabolism
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-
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
glutamate and glutamine metabolism
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-
Glutathione metabolism
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-
glutathione-peroxide redox reactions
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PWY-4081
glycerol degradation to butanol
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-
PWY-7003
glycolate and glyoxylate degradation
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-
glycolate and glyoxylate degradation I
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-
GLYCOLATEMET-PWY
glycolate and glyoxylate degradation II
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-
GLYOXDEG-PWY
glycolate and glyoxylate degradation III
-
-
PWY-6649
glycolysis
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-
Glycolysis / Gluconeogenesis
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-
glycolysis I (from glucose 6-phosphate)
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-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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-
PWY-5484
glycolysis III (from glucose)
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-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
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-
P341-PWY
Glyoxylate and dicarboxylate metabolism
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-
glyoxylate assimilation
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-
PWY-5744
glyoxylate cycle
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-
GLYOXYLATE-BYPASS
guanosine nucleotides degradation I
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-
PWY-6607
guanosine nucleotides degradation II
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-
PWY-6606
guanosine nucleotides degradation III
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-
PWY-6608
heterolactic fermentation
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-
P122-PWY
incomplete reductive TCA cycle
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-
P42-PWY
inosine 5'-phosphate degradation
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-
PWY-5695
L-alanine degradation II (to D-lactate)
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-
ALACAT2-PWY
L-arginine biosynthesis I (via L-ornithine)
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-
ARGSYN-PWY
L-arginine biosynthesis II (acetyl cycle)
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-
ARGSYNBSUB-PWY
L-arginine biosynthesis III (via N-acetyl-L-citrulline)
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-
PWY-5154
L-arginine biosynthesis IV (archaea)
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-
PWY-7400
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
-
-
PWY0-823
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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-
ARGDEG-III-PWY
L-arginine degradation V (arginine deiminase pathway)
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-
ARGDEGRAD-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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-
PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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-
PWY-6344
L-aspartate degradation II (aerobic)
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-
PWY-8291
L-aspartate degradation III (anaerobic)
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-
PWY-8294
L-citrulline biosynthesis
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-
CITRULBIO-PWY
L-citrulline degradation
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-
CITRULLINE-DEG-PWY
L-glutamate degradation I
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-
GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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-
P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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-
PWY-8190
L-glutamine biosynthesis I
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-
GLNSYN-PWY
Lysine degradation
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-
Metabolic pathways
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-
methylaspartate cycle
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
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-
FERMENTATION-PWY
Monobactam biosynthesis
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-
NAD metabolism
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-
NAD salvage (plants)
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-
PWY-5381
NAD salvage pathway III (to nicotinamide riboside)
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-
NAD-BIOSYNTHESIS-II
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADPH to cytochrome c oxidase via plastocyanin
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-
PWY-8271
Nicotinate and nicotinamide metabolism
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-
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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-
PWY-381
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitric oxide biosynthesis II (mammals)
-
-
PWY-4983
nitrifier denitrification
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-
PWY-7084
nitrite-dependent anaerobic methane oxidation
-
-
PWY-6523
Nitrogen metabolism
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-
nocardicin A biosynthesis
-
-
PWY-7797
non-pathway related
-
-
nucleoside and nucleotide degradation (archaea)
-
-
PWY-5532
Other types of O-glycan biosynthesis
-
-
Oxidative phosphorylation
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-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
Pentose and glucuronate interconversions
-
-
Pentose phosphate pathway
-
-
pentose phosphate pathway
-
-
pentose phosphate pathway (non-oxidative branch) I
-
-
NONOXIPENT-PWY
pentose phosphate pathway (non-oxidative branch) II
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-
PWY-8178
pentose phosphate pathway (partial)
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-
P21-PWY
phenol degradation
-
-
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
photorespiration II
-
-
PWY-8362
photorespiration III
-
-
PWY-8363
Photosynthesis
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-
photosynthesis
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-
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
polyamine pathway
-
-
procollagen hydroxylation and glycosylation
-
-
PWY-7894
Purine metabolism
-
-
purine metabolism
-
-
putrescine biosynthesis I
-
-
PWY-40
putrescine biosynthesis II
-
-
PWY-43
putrescine biosynthesis III
-
-
PWY-46
pyrimidine deoxyribonucleosides degradation
-
-
PWY-7181
Pyrimidine metabolism
-
-
pyrimidine metabolism
-
-
pyrimidine ribonucleosides degradation
-
-
PWY0-1295
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
Rubisco shunt
-
-
PWY-5723
selenate reduction
-
-
PWY-6932
Selenocompound metabolism
-
-
spermidine biosynthesis III
-
-
PWY-6834
Styrene degradation
-
-
succinate to chytochrome c oxidase via cytochrome c6
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-
PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
sulfate activation for sulfonation
-
-
PWY-5340
sulfate reduction
-
-
sulfite oxidation III
-
-
PWY-5278
Sulfur metabolism
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-
superoxide radicals degradation
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-
DETOX1-PWY
superpathway of glucose and xylose degradation
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-
PWY-6901
superpathway of ornithine degradation
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-
ORNDEG-PWY
Taurine and hypotaurine metabolism
-
-
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
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-
REDCITCYC
TCA cycle VII (acetate-producers)
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-
PWY-7254
Thiamine metabolism
-
-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
tunicamycin biosynthesis
-
-
PWY-7821
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
UMP biosynthesis I
-
-
PWY-5686
UMP biosynthesis II
-
-
PWY-7790
UMP biosynthesis III
-
-
PWY-7791
urea cycle
UTP and CTP dephosphorylation I
-
-
PWY-7185
vitamin K-epoxide cycle
Xylene degradation
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-
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
a small part of the plume
Manually annotated by BRENDA team
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
top
LINKS TO OTHER DATABASES (specific for Riftia pachyptila)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA