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Literature summary for 4.1.1.20 extracted from

  • Kim, J.
    Diaminopimelate decarboxylase from Arabidopsis contains motifs for pyridoxal-5'-phosphate and substrate (2006), Asian J. Plant Sci., 5, 260-265.
No PubMed abstract available
Search for more literature for 4.1.1.20

Cloned(Commentary)

Cloned (Comment) Organism
gene DAPDC1, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, overview Arabidopsis thaliana
gene DAPDC2, localization on chromosome V, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, overview Arabidopsis thaliana

Localization

Localization Comment Organism GeneOntology No. Textmining
chloroplast the enzyme contains a transit peptide-like sequence at the N-terminus Arabidopsis thaliana 9507
-

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
53600
-
 x * 53600, about, sequence calculation Arabidopsis thaliana

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
diaminopimelate Arabidopsis thaliana
-
 L-lysine + CO2
-
 ?
diaminopimelate Arabidopsis thaliana a step in the lysine biosynthetic pathway, overview L-lysine + CO2
-
 ?

Organism

Organism UniProt Comment Textmining
Arabidopsis thaliana Q949X7 precursor DAPDC1; gene DAPDC1
-
Arabidopsis thaliana Q94A94 DAPDC2; gene DAPDC2
-

Source Tissue

Source Tissue Comment Organism Textmining
flower
-
 Arabidopsis thaliana
-
leaf
-
 Arabidopsis thaliana
-
additional information DAPDC1 spatial expression pattern in various tissues, overview Arabidopsis thaliana
-
root
-
 Arabidopsis thaliana
-
stem
-
 Arabidopsis thaliana
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
diaminopimelate
-
 Arabidopsis thaliana L-lysine + CO2
-
 ?
diaminopimelate a step in the lysine biosynthetic pathway, overview Arabidopsis thaliana L-lysine + CO2
-
 ?

Subunits

Subunits Comment Organism
? x * 53600, about, sequence calculation Arabidopsis thaliana

Synonyms

Synonyms Comment Organism
DAPDC
-
 Arabidopsis thaliana

Cofactor

Cofactor Comment Organism Structure
pyridoxal 5'-phosphate
-
 Arabidopsis thaliana
pyridoxal 5'-phosphate dependent on, the DAPDC1 protein contains a PLP binding consensus site, overview Arabidopsis thaliana

pI Value

Organism Comment pI Value Maximum pI Value
Arabidopsis thaliana sequence calculation
-
 6.54