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Literature summary for 3.6.1.23 extracted from

  • Barabas, O.; Nemeth, V.; Bodor, A.; Perczel, A.; Rosta, E.; Kele, Z.; Zagyva, I.; Szabadka, Z.; Grolmusz, V.I.; Wilmanns, M.; Vertessy, B.G.
    Catalytic mechanism of ?-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling (2013), Nucleic Acids Res., 41, 10542-10555.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
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Mason-Pfizer monkey virus

Crystallization (Commentary)

Crystallization (Comment) Organism
in complex with nucleotides. Reaction starts with dUTPase capturing and properly positioning two substrates: dUTP and the catalytic water molecule. the catalytic water molecule is placed near the alpha-phosphate group opposite from the leaving group. Hydrolysis is then initiated by nucleophilic attack of Wthe water on the alpha-phosphate along the line of the scissile bond (in-line attack). A symmetric phosphorane-like transition state structure is formed with significant bond order in both forming and breaking bonds. Bond breaking is concomitant with inversion of the alpha-phosphate configuration and diphosphate-Mg2+ escape. The dUMP product then relaxes by rotation of the alpha-phosphate group and establishes a configuration similar to the one observed for this moiety in the E-S complex Mason-Pfizer monkey virus

Organism

Organism UniProt Comment Textmining
Mason-Pfizer monkey virus O92810
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-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
alpha,beta-imido-dUTP + H2O
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Mason-Pfizer monkey virus dUMP + amino-diphosphate
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?
dUTP + H2O
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Mason-Pfizer monkey virus dUMP + diphosphate
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?

Synonyms

Synonyms Comment Organism
Pr95
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Mason-Pfizer monkey virus