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Literature summary for 1.8.99.2 extracted from
- Homology modeling of dissimilatory APS reductases (AprBA) of sulfur-oxidizing and sulfate-reducing prokaryotes (2008), PLoS ONE, 3, e1514.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Pyrobaculum aerophilum |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Thermodesulfobacterium commune |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Thermodesulfovibrio yellowstonii |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Allochromatium vinosum |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfovibrio vulgaris |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfovibrio desulfuricans |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfobulbus sp. |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Olavius algarvensis |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Syntrophobacter fumaroxidans |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulforamulus reducens |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Thiobacillus denitrificans |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Caldivirga maquilingensis |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Chlorobaculum tepidum |
| full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Candidatus Pelagibacter ubique |
Metals/Ions
| Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|
| Iron | contains two [4Fe-4S] centers | Pyrobaculum aerophilum |  |
| Iron | contains two [4Fe-4S] centers | Thermodesulfobacterium commune | |
| Iron | contains two [4Fe-4S] centers | Thermodesulfovibrio yellowstonii | |
| Iron | contains two [4Fe-4S] centers | Desulfotalea psychrophila | |
| Iron | contains two [4Fe-4S] centers | Allochromatium vinosum | |
| Iron | contains two [4Fe-4S] centers | Desulfovibrio vulgaris | |
| Iron | contains two [4Fe-4S] centers | Desulfovibrio desulfuricans | |
| Iron | contains two [4Fe-4S] centers | Desulfobulbus sp. | |
| Iron | contains two [4Fe-4S] centers | Olavius algarvensis | |
| Iron | contains two [4Fe-4S] centers | Syntrophobacter fumaroxidans | |
| Iron | contains two [4Fe-4S] centers | Desulforamulus reducens | |
| Iron | contains two [4Fe-4S] centers | Thiobacillus denitrificans | |
| Iron | contains two [4Fe-4S] centers | Caldivirga maquilingensis | |
| Iron | contains two [4Fe-4S] centers | Chlorobaculum tepidum | |
| Iron | contains two [4Fe-4S] centers | Candidatus Pelagibacter ubique | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Allochromatium vinosum | O33996 | - |
- |
| Caldivirga maquilingensis | - |
- |
- |
| Candidatus Pelagibacter ubique | - |
HTCC1062 | - |
| Candidatus Pelagibacter ubique HTCC1062 | - |
HTCC1062 | - |
| Chlorobaculum tepidum | Q8KE28 | - |
- |
| Desulfobulbus sp. | - |
- |
- |
| Desulfobulbus sp. MLMS-1 | - |
- |
- |
| Desulforamulus reducens | - |
- |
- |
| Desulforamulus reducens MI-1 | - |
- |
- |
| Desulfotalea psychrophila | - |
- |
- |
| Desulfovibrio desulfuricans | Q9L768 | ATCC 29577 | - |
| Desulfovibrio vulgaris | Q72DT3 | str. Hildenborough | - |
| Desulfovibrio vulgaris Hildenborough | Q72DT3 | str. Hildenborough | - |
| Olavius algarvensis | B5QSJ0 | Delta1 symbiont | - |
| Pyrobaculum aerophilum | - |
- |
- |
| Syntrophobacter fumaroxidans | A0LH39 | beta-subunit | - |
| Thermodesulfobacterium commune | - |
- |
- |
| Thermodesulfovibrio yellowstonii | - |
- |
- |
| Thiobacillus denitrificans | Q5VLA6 | alpha-subunit; ATCC 25259 | - |
| Thiobacillus denitrificans | Q5VLA7 | beta-subunit; ATCC 25259 | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Pyrobaculum aerophilum | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Thermodesulfobacterium commune | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Thermodesulfovibrio yellowstonii | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfotalea psychrophila | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Allochromatium vinosum | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfovibrio vulgaris | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfovibrio desulfuricans | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfobulbus sp. | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Olavius algarvensis | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Syntrophobacter fumaroxidans | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulforamulus reducens | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Thiobacillus denitrificans | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Caldivirga maquilingensis | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Chlorobaculum tepidum | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Candidatus Pelagibacter ubique | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Candidatus Pelagibacter ubique HTCC1062 | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulforamulus reducens MI-1 | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfovibrio vulgaris Hildenborough | ? | - |
? | |
| additional information | full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation | Desulfobulbus sp. MLMS-1 | ? | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| AprBA | - |
Pyrobaculum aerophilum |
| AprBA | - |
Thermodesulfobacterium commune |
| AprBA | - |
Thermodesulfovibrio yellowstonii |
| AprBA | - |
Desulfotalea psychrophila |
| AprBA | - |
Allochromatium vinosum |
| AprBA | - |
Desulfovibrio vulgaris |
| AprBA | - |
Desulfovibrio desulfuricans |
| AprBA | - |
Desulfobulbus sp. |
| AprBA | - |
Olavius algarvensis |
| AprBA | - |
Syntrophobacter fumaroxidans |
| AprBA | - |
Desulforamulus reducens |
| AprBA | - |
Thiobacillus denitrificans |
| AprBA | - |
Caldivirga maquilingensis |
| AprBA | - |
Chlorobaculum tepidum |
| AprBA | - |
Candidatus Pelagibacter ubique |
| dissimilatory APS reductase | - |
Pyrobaculum aerophilum |
| dissimilatory APS reductase | - |
Thermodesulfobacterium commune |
| dissimilatory APS reductase | - |
Thermodesulfovibrio yellowstonii |
| dissimilatory APS reductase | - |
Desulfotalea psychrophila |
| dissimilatory APS reductase | - |
Allochromatium vinosum |
| dissimilatory APS reductase | - |
Desulfovibrio vulgaris |
| dissimilatory APS reductase | - |
Desulfovibrio desulfuricans |
| dissimilatory APS reductase | - |
Desulfobulbus sp. |
| dissimilatory APS reductase | - |
Olavius algarvensis |
| dissimilatory APS reductase | - |
Syntrophobacter fumaroxidans |
| dissimilatory APS reductase | - |
Desulforamulus reducens |
| dissimilatory APS reductase | - |
Thiobacillus denitrificans |
| dissimilatory APS reductase | - |
Caldivirga maquilingensis |
| dissimilatory APS reductase | - |
Chlorobaculum tepidum |
| dissimilatory APS reductase | - |
Candidatus Pelagibacter ubique |
Cofactor
| Cofactor | Comment | Organism | Structure |
|---|---|---|---|
| FAD | - |
Pyrobaculum aerophilum | |
| FAD | - |
Thermodesulfobacterium commune | |
| FAD | - |
Thermodesulfovibrio yellowstonii | |
| FAD | - |
Desulfotalea psychrophila | |
| FAD | - |
Allochromatium vinosum | |
| FAD | - |
Desulfovibrio vulgaris | |
| FAD | - |
Desulfovibrio desulfuricans | |
| FAD | - |
Desulfobulbus sp. | |
| FAD | - |
Olavius algarvensis | |
| FAD | - |
Syntrophobacter fumaroxidans | |
| FAD | - |
Desulforamulus reducens | |
| FAD | - |
Thiobacillus denitrificans | |
| FAD | - |
Caldivirga maquilingensis | |
| FAD | - |
Chlorobaculum tepidum | |
| FAD | - |
Candidatus Pelagibacter ubique | |
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