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show all sequences of 1.1.1.107

Crystallization and preliminary X-ray analysis of SDR-type pyridoxal dehydrogenase from Mesorhizobium loti

Chu, H.N.; Kobayashi, J.; Yoshikane, Y.; Mikami, B.; Yagi, T.; Acta Crystallogr. Sect. F 66, 718-720 (2010)

Data extracted from this reference:

Cloned(Commentary)
Commentary
Organism
expression in Escherichia coli
Mesorhizobium loti
Crystallization (Commentary)
Crystallization
Organism
recombinant selenomethionine-substituted enzyme, crystallized by the sitting-drop vapour-diffusion method using PEG 4000 as precipitant, in the presence of 0.45 mM NAD+. The crystals diffract to 2.9 A resolution and belong to the monoclinic space group P21
Mesorhizobium loti
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
26000
-
x * 26000, SDS-PAGE
Mesorhizobium loti
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Mesorhizobium loti
Q988B7
-
-
Purification (Commentary)
Commentary
Organism
recombinant protein
Mesorhizobium loti
Specific Activity [micromol/min/mg]
Specific Activity Minimum [Ámol/min/mg]
Specific Activity Maximum [Ámol/min/mg]
Commentary
Organism
103.9
-
selenomethionine-substituted enzyme, 30░C, pH 9.2
Mesorhizobium loti
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
pyridoxal + NAD+
-
710764
Mesorhizobium loti
4-pyridoxolactone + NADH + H+
-
-
-
?
Subunits
Subunits
Commentary
Organism
?
x * 26000, SDS-PAGE
Mesorhizobium loti
Cofactor
Cofactor
Commentary
Organism
Structure
NAD+
-
Mesorhizobium loti
Cloned(Commentary) (protein specific)
Commentary
Organism
expression in Escherichia coli
Mesorhizobium loti
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
NAD+
-
Mesorhizobium loti
Crystallization (Commentary) (protein specific)
Crystallization
Organism
recombinant selenomethionine-substituted enzyme, crystallized by the sitting-drop vapour-diffusion method using PEG 4000 as precipitant, in the presence of 0.45 mM NAD+. The crystals diffract to 2.9 A resolution and belong to the monoclinic space group P21
Mesorhizobium loti
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
26000
-
x * 26000, SDS-PAGE
Mesorhizobium loti
Purification (Commentary) (protein specific)
Commentary
Organism
recombinant protein
Mesorhizobium loti
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [Ámol/min/mg]
Specific Activity Maximum [Ámol/min/mg]
Commentary
Organism
103.9
-
selenomethionine-substituted enzyme, 30░C, pH 9.2
Mesorhizobium loti
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
pyridoxal + NAD+
-
710764
Mesorhizobium loti
4-pyridoxolactone + NADH + H+
-
-
-
?
Subunits (protein specific)
Subunits
Commentary
Organism
?
x * 26000, SDS-PAGE
Mesorhizobium loti
Other publictions for EC 1.1.1.107
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [░C]
Temperature Range [░C]
Temperature Stability [░C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [░C] (protein specific)
Temperature Range [░C] (protein specific)
Temperature Stability [░C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
721873
Chu
The crystal structure of SDR-t ...
Mesorhizobium loti
Biosci. Biotechnol. Biochem.
75
388-390
2011
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3
3
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710764
Chu
Crystallization and preliminar ...
Mesorhizobium loti
Acta Crystallogr. Sect. F
66
718-720
2010
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1
1
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1
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4
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1
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1
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1
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688568
Nishimura
Determination of individual vi ...
Saccharomyces cerevisiae
J. Nutr. Sci. Vitaminol.
54
18-24
2008
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1
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2
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1
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2
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699047
Tamura
Synthesis of 4-pyridoxolactone ...
Escherichia coli, Escherichia coli JM109
J. Biosci. Bioeng.
106
460-465
2008
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-
1
-
-
-
-
-
-
-
-
-
-
30
-
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2
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2
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1
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1
1
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2
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2
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667329
Yokochi
Identification of a new tetram ...
Mesorhizobium loti
Arch. Biochem. Biophys.
452
1-8
2006
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-
1
-
-
-
-
2
1
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4
2
-
3
-
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1
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1
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4
1
1
1
3
2
1
1
-
1
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-
1
1
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-
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2
1
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4
2
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1
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1
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4
1
1
1
3
2
1
1
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654111
Yokochi
Crystallization and preliminar ...
Microbacterium luteolum
Acta Crystallogr. Sect. D
60
2061-2062
2004
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1
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656239
Yokochi
Molecular cloning, expression, ...
Microbacterium luteolum, Microbacterium luteolum YK-1
J. Biol. Chem.
279
37377-37384
2004
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1
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7
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2
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5
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1
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11
1
1
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2
4
2
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2
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1
2
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7
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2
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1
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11
1
1
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2
4
2
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655029
Trongpanich
Purification and characterizat ...
Microbacterium luteolum
Biosci. Biotechnol. Biochem.
66
543-548
2002
-
-
-
-
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3
3
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2
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4
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1
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1
4
2
1
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1
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2
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2
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3
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1
4
2
1
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1
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2
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80781
Burg
The bacterial oxidation of vit ...
Pseudomonas sp.
J. Biol. Chem.
244
2585-2589
1969
1
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11
2
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2
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1
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1
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4
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1
1
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1
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1
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1
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11
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2
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2
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1
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4
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1
1
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