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Information on EC 6.3.4.3 - formate-tetrahydrofolate ligase and Organism(s) Homo sapiens and UniProt Accession Q6UB35

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     6 Ligases
         6.3 Forming carbon-nitrogen bonds
             6.3.4 Other carbon-nitrogen ligases
                6.3.4.3 formate-tetrahydrofolate ligase
IUBMB Comments
In eukaryotes occurs as a trifunctional enzyme also having methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) and methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) activity.
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This record set is specific for:
Homo sapiens
UNIPROT: Q6UB35
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Word Map
The taxonomic range for the selected organisms is: Homo sapiens
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
fthfs, formyltetrahydrofolate synthetase, c1-thf synthase, mthfd, 10-formyltetrahydrofolate synthetase, c1-tetrahydrofolate synthase, 10-formyl-thf synthetase, methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohydrolase-formyltetrahydrofolate synthetase, methylenetetrahydrofolate dehydrogenase 1-like, n10-formyltetrahydrofolate synthetase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
10-CHO-THF synthase
-
C1-tetrahydrofolate synthase
-
C1-tetrahydrofolate synthetase
-
methylenetetrahydrofolate dehydrogenase 1-like
-
NAD-dependent methylenetetrahydrofolate dehydrogenase
-
10-formyl-THF synthetase
-
-
10-Formyltetrahydrofolate synthetase
C(1)-tetrahydrofolate synthase
-
a monofunctional 10-formyl-tetrahydrofolate synthetase lacking the 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methenyl-tetrahydrofolate cyclohydrolase activities typically found in the trifunctional cytoplasmic proteins
C1 synthase
-
C1-tetrahydrofolate synthase
-
-
C1-THF synthase
-
-
FHS
-
-
-
-
formate-tetrahydrofolate ligase
-
-
-
-
formate:tetrahydrofolate ligase (ADP-forming)
-
-
-
-
Formyl-THF synthetase
-
-
-
-
Formyltetrahydrofolate synthetase
FTHFS
-
-
-
-
methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohydrolase-formyltetrahydrofolate synthetase
-
MTHFD
-
-
MTHFD1
MTHFD1L
-
-
MTHFDIL
-
-
Synthetase, formyl tetrahydrofolate
-
-
-
-
Tetrahydrofolate formylase
-
-
-
-
Tetrahydrofolic formylase
-
-
-
-
THF synthase
-
-
THFS
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate
show the reaction diagram
the enzyme is not trifunctional showing only 10-formyl-THS synthetase activity, enzyme evolutionary considerations
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
formylation
SYSTEMATIC NAME
IUBMB Comments
formate:tetrahydrofolate ligase (ADP-forming)
In eukaryotes occurs as a trifunctional enzyme also having methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) and methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) activity.
CAS REGISTRY NUMBER
COMMENTARY hide
9023-66-9
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + formate + tetrahydrofolate
ADP + phosphate + 10-formyltetrahydrofolate
show the reaction diagram
(R,S)-tetrahydrofolate + ATP + formate
?
show the reaction diagram
-
-
-
r
ATP + (6R,S)-tetrahydrofolate pteroylpentaglutamate
ADP + phosphate + 10-formyltetrahydrofolate pteroylpentaglutamate
show the reaction diagram
-
-
-
-
?
ATP + (6R,S)-tetrahydrofolate pteroyltriglutamate
ADP + phosphate + 10-formyltetrahydrofolate pteroyltriglutamate
show the reaction diagram
-
-
-
-
?
ATP + formate + (6R,S)-tetrahydrofolate monoglutamate
ADP + phosphate + 10-formyltetrahydrofolate monoglutamate
show the reaction diagram
-
-
-
-
?
ATP + formate + tetrahydrofolate
?
show the reaction diagram
-
two different physiological roles: 1. Functions anabolically in most organisms to activate formate via the forward reaction, and brings it into the one-carbon metabolic pool as N10-formyltetrahydrofolate, 2. In purine-fermenting bacteria the enzyme probably functions catabolically in the terminal step of the purine degradative pathway. This reaction may be responsible for ATP production in these organisms
-
-
?
ATP + formate + tetrahydrofolate
ADP + phosphate + 10-formyltetrahydrofolate
show the reaction diagram
formate + ATP + tetrahydrofolate
10-formyltetrahydrofolate + ADP + phosphate
show the reaction diagram
synthetase activity of MTHFD1
-
-
?
tetrahydrofolate + formate + ATP
10-formyltetrahydrofolate + ADP + phosphate
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
ATP + formate + tetrahydrofolate
ADP + phosphate + 10-formyltetrahydrofolate
show the reaction diagram
ATP + formate + tetrahydrofolate
?
show the reaction diagram
-
two different physiological roles: 1. Functions anabolically in most organisms to activate formate via the forward reaction, and brings it into the one-carbon metabolic pool as N10-formyltetrahydrofolate, 2. In purine-fermenting bacteria the enzyme probably functions catabolically in the terminal step of the purine degradative pathway. This reaction may be responsible for ATP production in these organisms
-
-
?
ATP + formate + tetrahydrofolate
ADP + phosphate + 10-formyltetrahydrofolate
show the reaction diagram
-
-
-
?
formate + ATP + tetrahydrofolate
10-formyltetrahydrofolate + ADP + phosphate
show the reaction diagram
synthetase activity of MTHFD1
-
-
?
tetrahydrofolate + formate + ATP
10-formyltetrahydrofolate + ADP + phosphate
show the reaction diagram
additional information
?
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
K+
-
activates at 100-200 mM, inhibitory above 200 mM
Mg2+
-
-
NH4+
-
activates, maximal at 100 mM
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Heminordihydroguaiaretic acid
-
-
nordihydroguaiaretic acid
-
-
Norisoguaiacin
-
-
pteroylpentaglutamate
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.5
(6R,S)-tetrahydrofolate monoglutamate
-
above, recombinant enzyme, 30°C
0.0036
(6R,S)-tetrahydrofolate pteroylpentaglutamate
-
recombinant enzyme, 30°C
0.016
(6R,S)-tetrahydrofolate pteroyltriglutamate
-
recombinant enzyme, 30°C
0.0286 - 0.2
ATP
0.0367 - 11.8
formate
0.333 - 0.364
tetrahydrofolate
additional information
additional information
-
steady-state kinetics, recombinant enzyme
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
16
(6R,S)-tetrahydrofolate monoglutamate
-
above, recombinant enzyme, 30°C
2.6
(6R,S)-tetrahydrofolate pteroylpentaglutamate
-
recombinant enzyme, 30°C
10
(6R,S)-tetrahydrofolate pteroyltriglutamate
-
recombinant enzyme, 30°C
additional information
additional information
-
the Kcat/Km tetrahydrofolate values are 0.03 s/M for the monoglutamate and 0.71 s/M for the pentaglutatmate substrates
-
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0338 - 0.0364
ADP
0.0296 - 0.0328
pteroylpentaglutamate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
23
synthetase activity of the wild type enzyme
23.8
synthetase activity of the mutant R653Q
additional information
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
30
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
high transcript levels
Manually annotated by BRENDA team
higher expression level
Manually annotated by BRENDA team
high expression level of MTHFD1L
Manually annotated by BRENDA team
high expression level of MTHFD1L
Manually annotated by BRENDA team
low expression level
Manually annotated by BRENDA team
higher expression level
Manually annotated by BRENDA team
low expression level
Manually annotated by BRENDA team
high expression level of MTHFD1L
Manually annotated by BRENDA team
high expression level of MTHFD1L
Manually annotated by BRENDA team
OSCC cell. The p53 pathway might contribute to the abnormal expression of MTHFD1L in OSCC
Manually annotated by BRENDA team
high expression level
Manually annotated by BRENDA team
high transcript levels
Manually annotated by BRENDA team
higher expression level
Manually annotated by BRENDA team
-
-
Manually annotated by BRENDA team
-
low expression
Manually annotated by BRENDA team
-
-
Manually annotated by BRENDA team
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
metabolism
the folate cycle is an important metabolic pathway that fulfills a number of cancer-specific nutrient demands. Folate (folic acid), or vitamin B9, is commonly found in Western diets and dietary supplements. A 1-carbon (1C) unit from serine is transferred to tetrahydrofolate (THF) by serine hydroxymethyl transferases (SHMTs) to form 5,10-methylenetetrahydrofolate (CH2-THF). The 1C unit is then transferred from one position of THF to another, thus creating the folate cycle. The folate cycle is composed of the cytoplasmic and mitochondrial compartments. The cytoplasmic compartment is carried out by methylenetetrahydrofolate dehydrogenase, cyclohydrolase, and formyltetrahydrofolate synthetase 1 (MTHFD1), while the mitochondrial compartment is carried out by MTHFD2/2L and methylenetetrahydrofolate dehydrogenase 1-like (MTHFD1L). MTHFD1 is a cytoplasmic trifunctional enzyme with CH2-THF dehydrogenase (EC 1.5.1.5), 5,10-methenyl-tetrahydrofolate (CH+-THF, EC 3.5.4.9) cyclohydrolase, and 10-formyl-tetrahydrofolate (10-CHO-THF, EC 6.3.4.3) synthase activities
physiological function
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
C1TM_HUMAN
978
0
105790
Swiss-Prot
Mitochondrion (Reliability: 2)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
102000
-
2 * 102000, homodimer, sequence calculation
107000
-
recombinant mitochondrial C1-THF synthase without the presequence but with the V5 epitope tag, SDS-PAGE
143000
-
recombinant mitochondrial isozyme, gel filtration
35000
-
recombinant short isoform, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
G1958A
-
the mutation is not associated with depression in postmenopausal women
R653Q
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
thermolability is reduced by magnesium adenosine triphosphate and eliminated by the substrate analog folate pentaglutamate, suggesting that folate status may modulate impact of the variant R653Q
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant enzyme is partially purified from HEK-293 cells by subcellular fractionation
by anion-exchange chromatography
recombinant maltose-binding protein fusion mitochondrial isozyme from Escherichia coli by metal affinity chromatography and gel filtration, the MBP-tag is cleaved off by TEV protease
-
TALON cobalt metal affinity resin chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in CHO cells and Saccharomyces cerevisiae
gene DKFZp586G1517, DNA and amino acid sequence determination and analysis, overexpression of mitochondrial enzyme in HEK-293 cells, unlabeled or FLAG-tagged, stimulates cell growth
expressed in CHO cells and Escherichia coli
-
expressed in Escherichia coli
-
expression in Escherichia coli, localization of the interdomain region of the trifunctional enzyme by site-directed mutagenesis
-
expression of the mitochondrial isozyme as maltose-binding protein fusion protein in Escherichia coli, overexpression in yeast
-
the wild type and R653Q mutant pBKeDCS constructs are transformed into Escherichia coli BL21 DE3 to express the full-length protein
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
MTHFD1L is transcriptionally activated by NRF2, a master regulator of redox homeostasis. MTHFD1L is a transcription target of nuclear factor (erythroid-derived 2)-like 2 (NRF2), a transcription factor that acts as the central regulator for redox homeostasis. NRF2 expression is tightly regulated by kelch-like ECH-associated protein 1 (KEAP1), a negative regulator that targets NRF2 for proteosomal degradation
the expression of MTHFD1L is significantly affected by the mTORC1-4EBP1-eIF4E axis
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
drug development
MTHFD1L overexpression is closely associated with aggressive clinicopathological features of hepatocellular carcinoma (HCC) including the presence of tumor microsatellite formation, venous invasion, and more advanced tumor stages. The enzyme MTHFD1L is a potential target in cancer therapy. Inhibition of the folate cycle sensitizes HCC cells to sorafenib treatment in vitro and in vivo
medicine
MTHFD1L may be involved in OSCC progression via the c-MYC gene and p53 signaling and may serve as a target and orientation for tumor therapy
pharmacology
the enzyme might be a target for colorectal cancer therapy
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Schegg, K.M.; Welch jr., W.
The effect of nordihydroguaiaretic acid and related lignans on formyltetrahydrofolate synthetase and carboxylesterase
Biochim. Biophys. Acta
788
167-180
1984
Bos taurus, Cavia porcellus, Homo sapiens, Mus musculus, Rattus norvegicus
Manually annotated by BRENDA team
Buttlaire, D.H.
Purification and properties of formyltetrahydrofolate synthetase
Methods Enzymol.
66
585-599
1980
Clostridium acidi-urici, Clostridium cylindrosporum, Escherichia coli, Gallus gallus, Homo sapiens, Micrococcus aerogenes, Moorella thermoacetica, Neurospora crassa, Oryctolagus cuniculus, Ovis aries, Pigeon, Pisum sativum, Priestia megaterium, Proteus vulgaris, Saccharomyces cerevisiae, Spinacia oleracea, Veillonella parvula
Manually annotated by BRENDA team
Hum, D.W.; MacKenzie, R.E.
Expression of active domains of a human folate-dependent trifunctional enzyme in Escherichia coli
Protein Eng.
4
493-500
1991
Homo sapiens
Manually annotated by BRENDA team
Hol, F.A.; van der Put, N.M.; Geurds, M.P.; Heil, S.G.; Trijbels, F.J.; Hamel, B.C.; Mariman, E.C.; Blom, H.J.
Molecular genetic analysis of the gene encoding the trifunctional enzyme MTHFD (methylenetetrahydrofolate-dehydrogenase, methenyltetrahydrofolate-cyclohydrolase, formyltetrahydrofolate synthetase) in patients with neural tube defects
Clin. Genet.
53
119-125
1998
Homo sapiens
Manually annotated by BRENDA team
Prasannan, P.; Pike, S.; Peng, K.; Shane, B.; Appling, D.R.
Human mitochondrial C1-tetrahydrofolate synthase: gene structure, tissue distribution of the mRNA, and immunolocalization in Chinese hamster ovary calls
J. Biol. Chem.
278
43178-43187
2003
Homo sapiens (Q6UB35), Homo sapiens
Manually annotated by BRENDA team
Walkup, A.S.; Appling, D.R.
Enzymatic characterization of human mitochondrial C1-tetrahydrofolate synthase
Arch. Biochem. Biophys.
442
196-205
2005
Homo sapiens
Manually annotated by BRENDA team
Sugiura, T.; Nagano, Y.; Inoue, T.; Hirotani, K.
A novel mitochondrial C1-tetrahydrofolate synthetase is upregulated in human colon adenocarcinoma
Biochem. Biophys. Res. Commun.
315
204-211
2004
Homo sapiens (Q6UB35), Homo sapiens
Manually annotated by BRENDA team
Parle-McDermott, A.; Kirke, P.N.; Mills, J.L.; Molloy, A.M.; Cox, C.; OLeary, V.B.; Pangilinan, F.; Conley, M.; Cleary, L.; Brody, L.C.; Scott, J.M.
Confirmation of the R653Q polymorphism of the trifunctional C1-synthase enzyme as a maternal risk for neural tube defects in the Irish population
Eur. J. Hum. Genet.
14
768-772
2006
Homo sapiens (P11586)
Manually annotated by BRENDA team
Prasannan, P.; Appling, D.R.
Human mitochondrial C(1)-tetrahydrofolate synthase: Submitochondrial localization of the full-length enzyme and characterization of a short isoform
Arch. Biochem. Biophys.
481
86-93
2008
Homo sapiens, Rattus norvegicus
Manually annotated by BRENDA team
Slopien, R.; Jasniewicz, K.; Meczekalski, B.; Warenik-Szymankiewicz, A.; Lianeri, M.; Jagodzinski, P.P.
Polymorphic variants of genes encoding MTHFR, MTR, and MTHFD1 and the risk of depression in postmenopausal women in Poland
Maturitas
61
252-255
2008
Homo sapiens
Manually annotated by BRENDA team
Christensen, K.E.; Rohlicek, C.V.; Andelfinger, G.U.; Michaud, J.; Bigras, J.L.; Richter, A.; Mackenzie, R.E.; Rozen, R.
The MTHFD1 p.Arg653Gln variant alters enzyme function and increases risk for congenital heart defects
Hum. Mutat.
30
212-220
2009
Homo sapiens (P11586)
Manually annotated by BRENDA team
Christensen, K.E.; Mackenzie, R.E.
Mitochondrial methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase, and formyltetrahydrofolate synthetases
Vitam. Horm.
79
393-410
2008
Homo sapiens, Saccharomyces cerevisiae (P07245), Saccharomyces cerevisiae (P09440)
Manually annotated by BRENDA team
Lee, D.; Xu, I.M.; Chiu, D.K.; Lai, R.K.; Tse, A.P.; Lan Li, L.; Law, C.T.; Tsang, F.H.; Wei, L.L.; Chan, C.Y.; Wong, C.M.; Ng, I.O.; Wong, C.C.
Folate cycle enzyme MTHFD1L confers metabolic advantages in hepatocellular carcinoma
J. Clin. Invest.
127
1856-1872
2017
Homo sapiens (Q6UB35)
Manually annotated by BRENDA team
Zhao, L.; Cheng, Z.; Lu, Z.; Jin, J.
NAD-dependent methylenetetrahydrofolate dehydrogenase inhibits oral squamous cell carcinoma cell proliferation and promotes apoptosis
Transl. Cancer Res.
10
1457-1469
2021
Homo sapiens (Q6UB35)
Manually annotated by BRENDA team