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Information on EC 6.1.1.14 - glycine-tRNA ligase and Organism(s) Homo sapiens and UniProt Accession P41250

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Homo sapiens
UNIPROT: P41250 not found.
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The taxonomic range for the selected organisms is: Homo sapiens
The enzyme appears in selected viruses and cellular organisms
Synonyms
glyrs, glycyl-trna synthetase, glyrs2, glycyl trna synthetase, glyrs1, glycine-trna ligase, glycyl-trna synthetase 1, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Glycine--tRNA ligase
-
Glycyl translase
-
Glycyl-transfer ribonucleate synthetase
-
Glycyl-transfer ribonucleic acid synthetase
-
Glycyl-transfer RNA synthetase
-
Synthetase, glycyl-transfer ribonucleate
-
Glycine--tRNA ligase
-
-
-
-
Glycyl translase
-
-
-
-
Glycyl-transfer ribonucleate synthetase
-
-
-
-
Glycyl-transfer ribonucleic acid synthetase
-
-
-
-
Glycyl-transfer RNA synthetase
-
-
-
-
Glycyl-tRNA synthetase
GlyRS
GRS1
-
-
Synthetase, glycyl-transfer ribonucleate
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
esterification
-
Aminoacylation
-
esterification
Aminoacylation
PATHWAY SOURCE
PATHWAYS
-
-
SYSTEMATIC NAME
IUBMB Comments
glycine:tRNAGly ligase (AMP-forming)
-
CAS REGISTRY NUMBER
COMMENTARY hide
9037-62-1
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + glycine + tRNAGly
AMP + diphosphate + glycyl-tRNAGly
show the reaction diagram
ATP + glycine + tRNAGly
AMP + diphosphate + glycyl-tRNAGly
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
ATP + glycine + tRNAGly
AMP + diphosphate + glycyl-tRNAGly
show the reaction diagram
ATP + glycine + tRNAGly
AMP + diphosphate + glycyl-tRNAGly
show the reaction diagram
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.5
-
assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
37
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
peripheral
Manually annotated by BRENDA team
gene expression
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
of peripheral nerves
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
enzyme knockdown decreases the global level of neddylation and causes cell cycle abnormality
metabolism
the essential enzyme for protein synthesis also plays a critical role in neddylation by specifically binding to NEDD8 and enhancing neddylation. The enzyme preferentially binds and protects Ubc12N8 and E, and regulates cell cycle progression
malfunction
physiological function
-
glycyl-tRNA synthetase specifically binds to the poliovirus internal ribosome entry site to activate translation initiation
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
GARS_HUMAN
739
0
83166
Swiss-Prot
Mitochondrion (Reliability: 3)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
77530
-
x * 77530, calculation from nucleotide sequence
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 75000, SDS-PAGE
dimer
homodimer, crystal structure, overall structural organization of GlyRS, overview
homodimer
-
?
-
x * 77530, calculation from nucleotide sequence
dimer
-
homodimer, crystal structure
homodimer
-
-
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
apo form of full-length E71G mutant and tRNA-bound mutant complex E71G/C157R, vapor diffusion method, using 13-15% (w/v) PEG 6000, 0.1 M sodium citrate buffer (pH 5.5), and 0.1 M NaCl
purified recombinant soluble enzyme, hanging drop vapour diffusion method, 0.001 ml of 8 mg/ml protein in 10 mM HEPES, pH 7.0, with 20 mM NaCl is mixed with 0.001 ml of reservoir solution containing 10% PEG 6000, 0.1 HEPES pH 6.5, 0.01 Tris-HCl, pH 8.5, 0.5 NaCl and 0.1 magnesium acetate at room temperature, 2 days, X-ray diffraction structure determination and analysis at 3.0 A resolution
vapor diffusion method, using 0.2% (w/v) 4-diaminobutane, 0.2% (w/v) cystamine dihydrochloride, 0.2% (w/v) diloxanide furoate, 0.2% (w/v) sarcosine, 0.2% (w/v) spermine, and 0.02 M HEPES sodium (pH 6.8) at a 2:1:1 ratio
purified His-tagged wild-type and S581L mutant enzymes, sitting drop vapour diffusion nanocrystallization method, mutant S581L GlyRS from 20% PEG 3350, 0.2 M Na2SO4, 0.1 M Bis-Tris propane, pH 6.5, wild-type GlyRS from 20% PEG 3350, 0.2M sodium bromide, 0.1 M bis-Tris propane pH 8.5, X-ray diffraction structure determination and anaylsis at 2.8A and 3.1 A resolution, respectively
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
C157R
the activity of the mutant enzyme is 62% of wild type
E71G/C157R
the activity of the mutant enzyme is 20% of wild type
G240R
the GARS mutation does not impair transcription or translation, modeled in yeast the mutation causes growth defects and impaired viability
G526R
H418R
modeled in yeast the mutation causes growth defects and impaired viability
L129P
modeled in yeast the mutation causes growth defects and impaired viability
Q640A
the mutation reduces the enzymatic activity by more than 10fold
Q675A
the mutation reduces the enzymatic activity by more than 10fold
Q675N
the mutation reduces the enzymatic activity by more than 10fold
Q82N
the mutant shows slightly increased activity compared to the wild type enzyme
R283A
the mutants retain 2% glycylation activity compared to the wild type enzyme
R283K
the mutants retain 20% glycylation activity compared to the wild type enzyme
R548A
the mutant shows strongly reduced activity compared to the wild type enzyme
R596Q
the mutation causes systemic mitochondrial disease
R67A
the mutant shows reduced activity compared to the wild type enzyme
S281A
the mutant shows reduced activity compared to the wild type enzyme
S635L
the mutation causes systemic mitochondrial disease
S91A
the mutant shows reduced activity compared to the wild type enzyme
T617A
the mutation reduces the enzymatic activity by more than 10fold
T631A
the mutant shows reduced activity compared to the wild type enzyme
Y604F
A57V
-
found in a screen of 33 patients
D500N
G240R
G526R
G598A
H418R
I280F
L129P
P234KY
-
naturally occuring mutation in the catalytic domain, the mutation lies in a conserved region and causes Charcot-Marie-Tooth peripheral neuropathies
P244L
-
disease phenotype CMT2D
S581L
additional information
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
glutathione Sepharose column chromatography
recombinant C-terminally His6-tagged cytosolic enzyme from Escherichia coli strain BL21(DE3) by nickel affinity chromatography
Superdex 200 gel filtration
glutathione-Sepharose column chromatography, and gel filtration
-
recombinant His-tagged wild-type and mutant enzymes from Escherichia coli strain BL21(DE3) by nickel affinity chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
DNA sequence determination and analysis, chromosomal localization in region 7p15.1-p15.3, the gene contains only 1 transcriptional start point in 3 different cell lines, but 5 potential initiation codons, expression may be translationally regulated, N-terminal mitochondrial targeting sequence
expressed in Escherichia coli BL21(DE3) cells
gene GARS, allele-specific expression analysis, expression of wild-type enzyme in Escherichia coli strain BL21(DE3), expression of EGFP-tagged enzyme in COS-7 cells, wild-type GARS-EGFP associates with granules in both the cell body and neurite projections of 42% of EGFP-positive transfected MN-1 cells
gene GARS, lacking the mitochondrial-specific coding region, expression as C-terminally His6-tagged cytosolic enzyme in Escherichia coli strain BL21(DE3)
as a fusion protein with 13 kDa biotinylated tag with an apparent MW of 90 kDa
-
expressed in Escherichia coli Rosetta (DE3) cells
-
expressed in Saccharomyces cerevisiae grs1-deficient cells
-
expression in Escherichia coli
-
expression of CMT-causing mutant variants and wild-type enzymes in neuroblastoma cells that sprout primitive neurites
-
expression of His-tagged wild-type and mutant enzymes in Escherichia coli strain BL21(DE3)
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Freist, W.; Logan, D.T.; Gauss, D.H.
Glycyl-tRNA synthetase
Biol. Chem. Hoppe-Seyler
377
343-356
1996
Aliivibrio fischeri, Alcaligenes faecalis, Geobacillus stearothermophilus, Brevibacillus brevis, Bombyx mori, Bos taurus, Saccharomyces cerevisiae, Gallus gallus, Chlamydia trachomatis, Escherichia coli, eukaryota, Thermus thermophilus, Haemophilus influenzae, Homo sapiens, Staphylococcus aureus, Mus musculus, Mycoplasma genitalium, Rattus norvegicus, Salmonella enterica subsp. enterica serovar Typhimurium
Manually annotated by BRENDA team
Williams, J.; Osvath, S.; Khong, T.F.; Pearse.M.; Power, D.
Cloning, sequencing and bacterial expression of human glycine tRNA synthetase
Nucleic Acids Res.
23
1307-1310
1995
Homo sapiens
Manually annotated by BRENDA team
Ge, Q.; Trieu, E.P.; Targoff, I.N.
Primary structure and functional expression in human glycyl-tRNA synthetase, an autoantigen in myositis
J. Biol. Chem.
269
28790-28797
1994
Homo sapiens
Manually annotated by BRENDA team
Shiba, K.; Schimmel, P.; Motegi, H.; Noda, T.
Human glycyl-tRNA synthetase. Wide divergence of primary structure from bacterial counterpart and species-specific aminoacylation
J. Biol. Chem.
269
30049-30055
1994
Bombyx mori, Escherichia coli, Homo sapiens, Saccharomyces cerevisiae
Manually annotated by BRENDA team
Mudge, S.J.; Williams, J.H.; Eyre, H.J.; Sutherland, G.R.; Cowan, P.J.; Power, D.A.
Complex organisation of the 5'-end of the human glycine tRNA synthetase gene
Gene
209
45-50
1998
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Xie, W.; Schimmel, P.; Yang, X.L.
Crystallization and preliminary X-ray analysis of a native human tRNA synthetase whose allelic variants are associated with Charcot-Marie-Tooth disease
Acta Crystallogr. Sect. F
62
1243-1246
2006
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Cader, M.Z.; Ren, J.; James, P.A.; Bird, L.E.; Talbot, K.; Stammers, D.K.
Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy
FEBS Lett.
581
2959-2964
2007
Homo sapiens
Manually annotated by BRENDA team
Antonellis, A.; Lee-Lin, S.Q.; Wasterlain, A.; Leo, P.; Quezado, M.; Goldfarb, L.G.; Myung, K.; Burgess, S.; Fischbeck, K.H.; Green, E.D.
Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons
J. Neurosci.
26
10397-10406
2006
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Nangle, L.A.; Zhang, W.; Xie, W.; Yang, X.L.; Schimmel, P.
Charcot-Marie-Tooth disease-associated mutant tRNA synthetases linked to altered dimer interface and neurite distribution defect
Proc. Natl. Acad. Sci. USA
104
11239-11244
2007
Homo sapiens
Manually annotated by BRENDA team
Xie, W.; Nangle, L.A.; Zhang, W.; Schimmel, P.; Yang, X.L.
Long-range structural effects of a Charcot-Marie-Tooth disease-causing mutation in human glycyl-tRNA synthetase
Proc. Natl. Acad. Sci. USA
104
9976-9981
2007
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Dierick, I.; Baets, J.; Irobi, J.; Jacobs, A.; De Vriendt, E.; Deconinck, T.; Merlini, L.; Van den Bergh, P.; Rasic, V.M.; Robberecht, W.; Fischer, D.; Morales, R.J.; Mitrovic, Z.; Seeman, P.; Mazanec, R.; Kochanski, A.; Jordanova, A.; Auer-Grumbach, M.; Helderman-van den Enden, A.T.; Wokke, J.H.
Relative contribution of mutations in genes for autosomal dominant distal hereditary motor neuropathies: a genotype-phenotype correlation study
Brain
131
1217-1227
2008
Homo sapiens
Manually annotated by BRENDA team
Motley, W.W.; Talbot, K.; Fischbeck, K.H.
GARS axonopathy: not every neurons cup of tRNA
Trends Neurosci.
33
59-66
2010
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Blumen, S.; Drory, V.; Sadeh, M.; El-Ad, B.; Soimu, U.; Groozman, G.; Bouchard, J.; Goldfarb, L.
Mutational analysis of glycyl-tRNA synthetase (GARS) gene in Hirayama disease
Amyotroph. Lateral Scler.
11
237-239
2010
Homo sapiens
Manually annotated by BRENDA team
Andreev, D.E.; Hirnet, J.; Terenin, I.M.; Dmitriev, S.E.; Niepmann, M.; Shatsky, I.N.
Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation
Nucleic Acids Res.
40
5602-5614
2012
Homo sapiens
Manually annotated by BRENDA team
McMillan, H.J.; Schwartzentruber, J.; Smith, A.; Lee, S.; Chakraborty, P.; Bulman, D.E.; Beaulieu, C.L.; Majewski, J.; Boycott, K.M.; Geraghty, M.T.
Compound heterozygous mutations in glycyl-tRNA synthetase are a proposed cause of systemic mitochondrial disease
BMC Med. Genet.
15
36
2014
Homo sapiens (P41250)
Manually annotated by BRENDA team
Qin, X.; Hao, Z.; Tian, Q.; Zhang, Z.; Zhou, C.; Xie, W.
Cocrystal structures of glycyl-tRNA synthetase in complex with tRNA suggest multiple conformational states in glycylation
J. Biol. Chem.
289
20359-20369
2014
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Deng, X.; Qin, X.; Chen, L.; Jia, Q.; Zhang, Y.; Zhang, Z.; Lei, D.; Ren, G.; Zhou, Z.; Wang, Z.; Li, Q.; Xie, W.
Large conformational changes of insertion 3 in human glycyl-tRNA synthetase (hGlyRS) during catalysis
J. Biol. Chem.
291
5740-5752
2016
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Mo, Z.; Zhang, Q.; Liu, Z.; Lauer, J.; Shi, Y.; Sun, L.; Griffin, P.R.; Yang, X.L.
Neddylation requires glycyl-tRNA synthetase to protect activated E2
Nat. Struct. Mol. Biol.
23
730-737
2016
Homo sapiens (P41250), Homo sapiens
Manually annotated by BRENDA team
Chien, C.I.; Chen, Y.W.; Wu, Y.H.; Chang, C.Y.; Wang, T.L.; Wang, C.C.
Functional substitution of a eukaryotic glycyl-tRNA synthetase with an evolutionarily unrelated bacterial cognate enzyme
PLoS ONE
9
e94659
2014
Arabidopsis thaliana, Homo sapiens, Saccharomyces cerevisiae, Thermus thermophilus
Manually annotated by BRENDA team