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ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
the enzyme aminoacylates Escherichia coli tRNA as well as in vitro transcribed human mitochondrial tRNAs
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?
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
ATP + L-tyrosine + tRNATyr + A22G mutated tRNATyr transcript
?
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?
ATP + L-tyrosine + tRNATyr + G15A mutated tRNATyr transcript
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?
ATP + L-tyrosine + tRNATyr + U54C mutated tRNATyr transcript
?
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-
-
-
?
ATP + tyrosine + tRNATyr
AMP + Tyr-tRNATyr + diphosphate
additional information
?
-
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
-
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
-
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
-
-
-
r
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
-
2-step reaction mechanism, 1. activation of the amino acid by MgATP2- to form an enzyme-bound aminoacyl-adenylate intermediate, 2. transfer of the amino acid to the 3'-end of its cognate tRNATyr
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r
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
-
2-step reaction, 1. activation of L-tyrosine with ATP to form L-Tyr-AMP, 2. transfer of the tyrosyl-group to tRNATyr
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?
ATP + tyrosine + tRNATyr
AMP + Tyr-tRNATyr + diphosphate
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-
?
ATP + tyrosine + tRNATyr
AMP + Tyr-tRNATyr + diphosphate
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r
additional information
?
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the enzyme's C-terminal domain, an EMAP II-like protein, is active in angiogenesis pathways and stimulates immune cells, when cleaved off the enzyme, it stimulates blood vessel development
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?
additional information
?
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TyrRS deficiency is involved in the autosomal dominant intermediate Charcot-Marie-Tooth neuropathy type C disorder, overview
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?
additional information
?
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-
recombinant hTyrRS also synthesizes kyotorphin from tyrosine, arginine, and ATP, cf. EC 6.3.2.24
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?
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ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
ATP + tyrosine + tRNATyr
AMP + Tyr-tRNATyr + diphosphate
additional information
?
-
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
-
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + diphosphate + L-tyrosyl-tRNATyr
-
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
-
-
-
?
ATP + L-tyrosine + tRNATyr
AMP + L-Tyr-tRNATyr + diphosphate
-
-
-
r
ATP + tyrosine + tRNATyr
AMP + Tyr-tRNATyr + diphosphate
-
-
-
?
ATP + tyrosine + tRNATyr
AMP + Tyr-tRNATyr + diphosphate
-
-
-
r
additional information
?
-
-
the enzyme's C-terminal domain, an EMAP II-like protein, is active in angiogenesis pathways and stimulates immune cells, when cleaved off the enzyme, it stimulates blood vessel development
-
?
additional information
?
-
-
TyrRS deficiency is involved in the autosomal dominant intermediate Charcot-Marie-Tooth neuropathy type C disorder, overview
-
-
?
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Acidosis, Lactic
A novel homozygous YARS2 mutation causes severe myopathy, lactic acidosis, and sideroblastic anemia 2.
Acidosis, Lactic
A novel mutation in YARS2 causes myopathy with lactic acidosis and sideroblastic anemia.
Acidosis, Lactic
Mutation of the mitochondrial tyrosyl-tRNA synthetase gene, YARS2, causes myopathy, lactic acidosis, and sideroblastic anemia--MLASA syndrome.
Acidosis, Lactic
Phenotypic variability and identification of novel YARS2 mutations in YARS2 mitochondrial myopathy, lactic acidosis and sideroblastic anaemia.
Acidosis, Lactic
Two Novel Variants in YARS2 Gene Are Responsible for an Extended MLASA Phenotype with Pancreatic Insufficiency.
Anemia, Sideroblastic
A novel homozygous YARS2 mutation causes severe myopathy, lactic acidosis, and sideroblastic anemia 2.
Anemia, Sideroblastic
A novel mutation in YARS2 causes myopathy with lactic acidosis and sideroblastic anemia.
Anemia, Sideroblastic
Phenotypic variability and identification of novel YARS2 mutations in YARS2 mitochondrial myopathy, lactic acidosis and sideroblastic anaemia.
Anemia, Sideroblastic
Two Novel Variants in YARS2 Gene Are Responsible for an Extended MLASA Phenotype with Pancreatic Insufficiency.
Asthma
Association analysis of DTD1 gene variations with aspirin-intolerance in asthmatics.
Deafness
Contribution of a mitochondrial tyrosyl-tRNA synthetase mutation to the phenotypic expression of the deafness-associated tRNASer(UCN) 7511A>G mutation.
Extensively Drug-Resistant Tuberculosis
Identification of an anti-TB compound targeting the tyrosyl-tRNA synthetase.
Infections
Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors.
Leishmaniasis
Twin Attributes of Tyrosyl-tRNA Synthetase of Leishmania donovani: A HOUSEKEEPING PROTEIN TRANSLATION ENZYME AND A MIMIC OF HOST CHEMOKINE.
Liver Diseases
Novel partial loss-of-function variants in the tyrosyl-tRNA synthetase 1 (YARS1) gene involved in multisystem disease.
Malaria
Malaria parasite tyrosyl-tRNA synthetase secretion triggers pro-inflammatory responses.
Mitochondrial Diseases
A novel homozygous YARS2 mutation causes severe myopathy, lactic acidosis, and sideroblastic anemia 2.
Muscular Diseases
A novel homozygous YARS2 mutation causes severe myopathy, lactic acidosis, and sideroblastic anemia 2.
Muscular Diseases
A novel mutation in YARS2 causes myopathy with lactic acidosis and sideroblastic anemia.
Muscular Diseases
Mutation of the mitochondrial tyrosyl-tRNA synthetase gene, YARS2, causes myopathy, lactic acidosis, and sideroblastic anemia--MLASA syndrome.
Muscular Diseases
Phenotypic variability and identification of novel YARS2 mutations in YARS2 mitochondrial myopathy, lactic acidosis and sideroblastic anaemia.
Muscular Diseases
Two Novel Variants in YARS2 Gene Are Responsible for an Extended MLASA Phenotype with Pancreatic Insufficiency.
Myocardial Infarction
Different angiogenesis effect of mini-TyrRS/mini-TrpRS by systemic administration of modified siRNAs in rats with acute myocardial infarction.
Myocardial Infarction
Effect of mini-tyrosyl-tRNA synthetase/mini-tryptophanyl-tRNA synthetase on ischemic angiogenesis in rats: proliferation and migration of endothelial cells.
Myocardial Infarction
Natural aminoacyl tRNA synthetase fragment enhances cardiac function after myocardial infarction.
Neoplasms
The novel fragment of tyrosyl tRNA synthetase, mini-TyrRS, is secreted to induce an angiogenic response in endothelial cells.
Optic Atrophy, Hereditary, Leber
Leber's Hereditary Optic Neuropathy Arising From the Synergy Between ND1 3635G>A Mutation and Mitochondrial YARS2 Mutations.
Optic Nerve Diseases
Leber's Hereditary Optic Neuropathy Arising From the Synergy Between ND1 3635G>A Mutation and Mitochondrial YARS2 Mutations.
Parasitic Diseases
Leishmania donovani tyrosyl-tRNA synthetase structure in complex with a tyrosyl adenylate analog and comparisons with human and protozoan counterparts.
Starvation
Confirmation of the antibacterial mode of action of SB-219383, a novel tyrosyl tRNA synthetase inhibitor from a Micromonospora sp.
Thrombocytopenia
Recombinant human tyrosyl-tRNA synthetase, a novel thrombopoietic agent.
Thrombocytopenia
Tyrosyl-tRNA synthetase stimulates thrombopoietin-independent hematopoiesis accelerating recovery from thrombocytopenia.
Tuberculosis
Identification of an anti-TB compound targeting the tyrosyl-tRNA synthetase.
Tuberculosis
Structural states of the flexible catalytic loop of M. tuberculosis tyrosyl-tRNA synthetase in different enzyme-substrate complexes.
Tuberculosis
[A model of three-dimensional structure of Mycobacterium tuberculosis tyrosyl-tRNA synthetase]
tyrosine-trna ligase deficiency
An animal model for mitochondrial tyrosyl-tRNA synthetase deficiency reveals links between oxidative phosphorylation and retinal function.
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1.6
A22G mutated tRNATyr transcript
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0.8
G15A mutated tRNATyr transcript
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2.2
U54C mutated tRNATyr transcript
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additional information
additional information
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0.00052
tRNATyr
pH 7.6, 37°C, native Escherichia coli tRNATyr
0.0048
tRNATyr
pH 7.6, 37°C, human mitochondrial tRNATyr
3
ATP
-
pH 7.5, 25°C, mutant S225A and mutant K231A
4
ATP
-
pH 7.5, 25°C, wild-type enzyme and mutant S224A
4.1
ATP
-
pH 7.5, 25°C, mutant S226A
22
K+
-
pH 7.5, 25°C, mutant S226A
24
K+
-
pH 7.5, 25°C, mutant S224A
30
K+
-
pH 7.5, 25°C, mutant S225A
32
K+
-
pH 7.5, 25°C, wild-type enzyme
0.0003
L-tyrosine
-
30°C, purified recombinant His-tagged enzyme
0.021
L-tyrosine
-
pH 7.5, 25°C, mutant S225A
0.03
L-tyrosine
-
pH 7.5, 25°C, mutant K231A
0.034
L-tyrosine
-
pH 7.5, 25°C, wild-type enzyme
0.042
L-tyrosine
-
pH 7.5, 25°C, mutant S226A
0.05
L-tyrosine
-
pH 7.5, 25°C, mutant S224A
0.0009
tRNATyr
-
30°C, purified recombinant His-tagged enzyme
additional information
additional information
-
fluorescence emission measurement for determination of steady-state kinetics for the His-tagged and the non-His-tagged recombinant enzyme
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additional information
additional information
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the C-terminal His-tag of the recombinant enzyme has little effect on the catalytic activity
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E196K
-
naturally occuring mutation in the autosomal dominant intermediate Charcot-Marie-Tooth neuropathy type C disorder, the mutant enzyme shows reduced activity and specific distribution in the cell compared to the wild-type enzyme, no functional complementation of a Saccharomyces cerevisiae TYS1 mutant strain, the mutant shows altered distribution in neuronal cells compared to the wild-type enzyme when recombinantly expressed
G41R
-
naturally occuring mutation in the autosomal dominant intermediate Charcot-Marie-Tooth neuropathy type C disorder, the mutant enzyme shows reduced activity and specific distribution in the cell compared to the wild-type enzyme, partial functional complementation of a Saccharomyces cerevisiae TYS1 mutant strain, the mutant shows altered distribution in neuronal cells compared to the wild-type enzyme when recombinantly expressed
K231A
-
site-directed mutagenesis, no effect on the catalytic activity of the enzyme
M252A
-
site-directed mutagenesis, the mutant is fully active in ATP/diphosphate exchange, indicating that the site for tyrosyl-adenylate formation remains unperturbed upon mutation, tRNA mutant U73 is no more charged by mt-TyrRS upon Met252Ala mutation, the weak tyrosylation activity of tRNATyr with G73 is completely abolished, mutating Met252 shows only faint effects on wild-type and mutants mt-tRNATyr charging as compared to the wild-type enzyme
mini-TyrRS_D173A
binding pocket variant, retains cytokine function
mini-TyrRS_TyrRS(ELQ)
the surface helix encodes an ELR motif that functions like the ELR tripeptide in CXC cytokines, substitution of Arg93 to generate ELQ
mini-TyrRS_TyrRS(EYR)
the surface helix encodes an ELR motif that functions like the ELR tripeptide in CXC cytokines, substitution of Leu92 to generate EYR
mini-TyrRS_TyrRS(NLR)
the surface helix encodes an ELR motif that functions like the ELR tripeptide in CXC cytokines, substitution of Glu91 to generate NLR
mini-TyrRS_Y39A
binding pocket variant, retains cytokine function
mini-TyrRS_Y39A/D173A
binding pocket variant, retains cytokine function
Q202A
-
site-directed mutagenesis, the mutant is fully active in ATP/diphosphate exchange, indicating that the site for tyrosyl-adenylate formation remains unperturbed upon mutation, the weak tyrosylation activity of tRNATyr with G73 is completely abolished, mutating Gln202 shows only faint effects on wild-type and mutants mt-tRNATyr charging as compared to the wild-type enzyme
S200A
-
site-directed mutagenesis, the mutant is fully active in ATP/diphosphate exchange, indicating that the site for tyrosyl-adenylate formation remains unperturbed upon mutation, replacing Ser200 with Glu completely abolishes tyrosylation activity of wild-type and mutated tRNATyr transcripts
S224A
-
site-directed mutagenesis, 7.5fold decrease of the forward rate constant
S225A
-
site-directed mutagenesis, no effect on the catalytic activity of the enzyme
S226A
-
site-directed mutagenesis, 60fold decrease of the forward rate constant
TyrRS_153-156delVKQV
-
dominant-intermediate Charcot-Marie-Tooth neuropathy associated mutation
TyrRS_E196K
-
dominant-intermediate Charcot-Marie-Tooth neuropathy associated mutation
TyrRS_G41R
-
dominant-intermediate Charcot-Marie-Tooth neuropathy associated mutation
additional information
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disrupted function and axonal distribution of the mutant enzyme in autosomal dominant intermediate Charcot-Marie-Tooth neuropathy type C, a common disorder of the peripheral nervous system, caused by demyelination or axonal degeneration or a combination of both, mutant families analysis, mutation analysis, phenotype, overview
additional information
two closely related, internally deleted, splice variants of homodimeric human tyrosyl-tRNA synthetase (TyrRS) are analyzed, in spite of both variants ablating a portion of the catalytic core and dimer-interface contacts of native TyrRS, each folded into a distinct stable structure. The internal deletion of TyrRSE2-4 splice variant gives an alternative, neomorphic dimer interface orthogonal to that of native TyrRS. One splice variant, TyrRSE2-4, is largely dimeric while the other is mostly monomeric. TyrRS SVs are specifically enriched in lymphocytes and lung tissue
additional information
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two closely related, internally deleted, splice variants of homodimeric human tyrosyl-tRNA synthetase (TyrRS) are analyzed, in spite of both variants ablating a portion of the catalytic core and dimer-interface contacts of native TyrRS, each folded into a distinct stable structure. The internal deletion of TyrRSE2-4 splice variant gives an alternative, neomorphic dimer interface orthogonal to that of native TyrRS. One splice variant, TyrRSE2-4, is largely dimeric while the other is mostly monomeric. TyrRS SVs are specifically enriched in lymphocytes and lung tissue
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overexpression in Escherichia coli
DNA and amino acid sequence determination of wild-type and mutant enzymes, localization of the gene encoding the enzyme on chromosome 1p34-p35, functional complementation of a Saccharomyces cerevisiae TYS1 mutant strain, overview, transient expression of EGFP-tagged wild-type and mutant enzymes in murine neuroblastoma N2a cells
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expression of His-tagged full-length wild-type and truncated mutant enzymes in Escherichia coli
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expression of the enzyme as His-tagged protein in Escherichia coli strain BL21(DE3)
-
expression of wild-type and mutant enzymes as His-tagged proteins in Escherichia coli
-
gene TyrS, DNA sequence determination, overexpression as His-tagged enzyme in Escherichia coli BL21
-
mutant human mini-TyrRS constructs are generated using QuikChange site-directed mutagenesis kit and using a plasmid encoding the gene for wild-type human mini-TyrRS as the template for PCR mutagenesis reactions, all proteins are expressed with a C-terminal His-tag to facilitate purification
recombinant expression of N-terminally His6-tagged enzyme in Escherichia coli strain BL21(DE3)
-
tyrS, DNA and amino acid sequence determination and analysis, analysis of two closely related, internally deleted, splice variants of homodimeric human tyrosyl-tRNA synthetase (TyrRS). Detection of the TyrRS transcripts in the cytoplasmic and polyribosomal RNA is carried out by PCR using primers targeting the 5'-UTR/exon1 and exon5/exon6 regions of the TyrRS gene (FP and RP2). Recombinant expression of splice variants in Jurkat T, THP-1, or HEK-293T cells, and recombinant expression of splice variants as thioredoxin-His-tagged proteins in Escherichia coli strain BL21(DE3), removal of the tag by protease-3C, followed by gel filtration
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Ewalt, K.L.; Schimmel, P.
Activation of angiogenic signaling pathways by two human tRNA synthetases
Biochemistry
41
13344-13349
2002
Homo sapiens
brenda
Austin, J.; First, E.A.
Catalysis of tyrosyl-adenylate formation by the human tyrosyl-tRNA synthetase
J. Biol. Chem.
277
14812-14820
2002
Homo sapiens
brenda
Austin, J.; First, E.A.
Comparison of the catalytic roles played by the KMSKS motif in the human and Bacillus stearothermophilus trosyl-tRNA synthetases
J. Biol. Chem.
277
28394-28399
2002
Geobacillus stearothermophilus, Homo sapiens
brenda
Jia, J.; Li, B.; Jin, Y.; Wang, D.
Expression, purification, and characterization of human tyrosyl-tRNA synthetase
Protein Expr. Purif.
27
104-108
2003
Homo sapiens
brenda
Bonnefond, L.; Fender, A.; Rudinger-Thirion, J.; Giege, R.; Florentz, C.; Sissler, M.
Toward the full set of human mitochondrial aminoacyl-tRNA synthetases: characterization of AspRS and TyrRS
Biochemistry
44
4805-4816
2005
Homo sapiens (Q9Y2Z4), Homo sapiens
brenda
Jordanova, A.; Irobi, J.; Thomas, F.P.; Van Dijck, P.; Meerschaert, K.; Dewil, M.; Dierick, I.; Jacobs, A.; De Vriendt, E.; Guergueltcheva, V.; Rao, C.V.; Tournev, I.; Gondim, F.A.; DHooghe, M.; Van Gerwen, V.; Callaerts, P.; Van Den Bosch, L.; Timmermans, J.P.; Robberecht, W.; Gettemans, J.; The, T.h.e.v.
Disrupted function and axonal distribution of mutant tyrosyl-tRNA synthetase in dominant intermediate Charcot-Marie-Tooth neuropathy
Nat. Genet.
38
197-202
2006
Homo sapiens
brenda
Bonnefond, L.; Frugier, M.; Touze, E.; Lorber, B.; Florentz, C.; Giege, R.; Sauter, C.; Rudinger-Thirion, J.
Crystal structure of human mitochondrial tyrosyl-tRNA synthetase reveals common and idiosyncratic features
Structure
15
1505-1516
2007
Homo sapiens
brenda
Bonnefond, L.; Florentz, C.; Giege, R.; Rudinger-Thirion, J.
Decreased aminoacylation in pathology-related mutants of mitochondrial tRNATyr is associated with structural perturbations in tRNA architecture
RNA
14
641-648
2008
Homo sapiens
brenda
Kapoor, M.; Otero, F.J.; Slike, B.M.; Ewalt, K.L.; Yang, X.L.
Mutational separation of aminoacylation and cytokine activities of human tyrosyl-tRNA synthetase
Chem. Biol.
16
531-539
2009
Homo sapiens (P54577), Homo sapiens
brenda
Storkebaum, E.; Leitao-Goncalves, R.; Godenschwege, T.; Nangle, L.; Mejia, M.; Bosmans, I.; Ooms, T.; Jacobs, A.; Van Dijck, P.; Yang, X.L.; Schimmel, P.; Norga, K.; Timmerman, V.; Callaerts, P.; Jordanova, A.
Dominant mutations in the tyrosyl-tRNA synthetase gene recapitulate in Drosophila features of human Charcot-Marie-Tooth neuropathy
Proc. Natl. Acad. Sci. USA
106
11782-11787
2009
Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens
brenda
Vo, M.N.; Yang, X.L.; Schimmel, P.
Dissociating quaternary structure regulates cell-signaling functions of a secreted human tRNA synthetase
J. Biol. Chem.
286
11563-11568
2011
Homo sapiens
brenda
Savytskyi, O.V.; Yesylevskyy, S.O.; Kornelyuk, A.I.
Asymmetric structure and domain binding interfaces of human tyrosyl-tRNA synthetase studied by molecular dynamics simulations
J. Mol. Recognit.
26
113-120
2013
Homo sapiens (P54577), Homo sapiens
brenda
Ling, Z.; Yanling, Z.; Zhe, F.; Kui, C.; Xiushi, Z.; Min, Y.; Wei, M.
Recombinant human tyrosyl-tRNA synthetase, a novel thrombopoietic agent
Eur. J. Pharmacol.
738
293-300
2014
Homo sapiens
brenda
Wei, Z.; Xu, Z.; Liu, X.; Lo, W.S.; Ye, F.; Lau, C.F.; Wang, F.; Zhou, J.J.; Nangle, L.A.; Yang, X.L.; Zhang, M.; Schimmel, P.
Alternative splicing creates two new architectures for human tyrosyl-tRNA synthetase
Nucleic Acids Res.
44
1247-1255
2016
Homo sapiens (P54577), Homo sapiens
brenda
Tsukahara, T.; Yamagishi, S.; Neyama, H.; Ueda, H.
Tyrosyl-tRNA synthetase A potential kyotorphin synthetase in mammals
Peptides
101
60-68
2018
Homo sapiens
brenda