Reference on EC 5.4.99.25 - tRNA pseudouridine55 synthase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Becker, H.F.; Motorin, Y.; Planta, R.J.; Grosjean, H.
The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi 55 in both mitochondrial and cytoplasmatic tRNAs
Nucleic Acids Res.
25
4493-4499
1997
Saccharomyces cerevisiae (P48567), Saccharomyces cerevisiae
Ramamurthy, V.; Swann, S.; Spedaliere, C.; Mueller, E.
Role of cysteine residues in pseudouridine synhases of different families
Biochemistry
38
13106-13111
1999
Escherichia coli (P60340)
Hoang, C.; Ferre-D'Amare, A.R.
Cocrystal structure of a tRNA psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme
Cell
107
929-939
2001
Escherichia coli (P60340)
Chaudhuri, B.N.; Chan, S.; Perry, L.J.; Yeates, T.O.
Crystal structure of the apo forms of psi55 tRNA pseudouridine synthase from Mycobacterium tuberculosis. A hinge at the base of the catalytic cleft
J. Biol. Chem.
279
24585-24591
2004
Mycobacterium tuberculosis (P9WHP7), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WHP7)
Pan, H.; Agarwalla, S.; Moustakas, D.T.; Finer-Moore, J.; Stroud, R.M.
Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
Proc. Natl. Acad. Sci. USA
100
12648-12653
2003
Escherichia coli (P60340), Thermotoga maritima (Q9WZW0)
Phannachet, K.; Elias, Y.; Huang, R.H.
Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase
Biochemistry
44
15488-15494
2005
Thermotoga maritima (Q9WZW0), Thermotoga maritima
Hoang, C.; Hamilton, C.S.; Mueller, E.G.; Ferre-D'Amare, A.R.
Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain
Protein Sci.
14
2201-2206
2005
Escherichia coli (P60340)
Gurha, P.; Gupta, R.
Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA
RNA
14
2521-2527
2008
Methanocaldococcus jannaschii, Pyrococcus furiosus
Pienkowska, J.; Wrzesinski, J.; Szweykowska-Kulinska, Z.
A cell-free yellow lupin extract containing activities of pseudouridine 35 and 55 synthases
Acta Biochim. Pol.
45
745-754
1998
Lupinus luteus
Gu, X.; Yu, M.; Ivanetich, K.M.; Santi, D.V.
Molecular recognition of tRNA by tRNA pseudouridine 55 synthase
Biochemistry
37
339-343
1998
Escherichia coli
Spedaliere, C.J.; Hamilton, C.S.; Mueller, E.G.
Functional importance of motif I of pseudouridine synthases: mutagenesis of aligned lysine and proline residues
Biochemistry
39
9459-9465
2000
Escherichia coli (P60340)
Urbonavicius, J.; Durand, J.M.; Bjrk, G.R.
Three modifications in the D and T arms of tRNA influence translation in Escherichia coli and expression of virulence genes in Shigella flexneri
J. Bacteriol.
184
5348-5357
2002
Escherichia coli, Shigella flexneri
Kinghorn, S.M.; O'Byrne, C.P.; Booth, I.R.; Stansfield, I.
Physiological analysis of the role of truB in Escherichia coli: a role for tRNA modification in extreme temperature resistance
Microbiology
148
3511-3520
2002
Escherichia coli (P60340)
Roovers, M.; Hale, C.; Tricot, C.; Terns, M.P.; Terns, R.M.; Grosjean, H.; Droogmans, L.
Formation of the conserved pseudouridine at position 55 in archaeal tRNA
Nucleic Acids Res.
34
4293-4301
2006
Pyrococcus furiosus
Muller, S.; Fourmann, J.B.; Loegler, C.; Charpentier, B.; Branlant, C.
Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:PSI-synthase activities
Nucleic Acids Res.
35
5610-5624
2007
Pyrococcus abyssi (Q9V1A5)
Gurha, P.; Joardar, A.; Chaurasia, P.; Gupta, R.
Differential roles of archaeal box H/ACA proteins in guide RNA-dependent and independent pseudouridine formation
RNA Biol.
4
101-109
2007
Methanocaldococcus jannaschii
Spedaliere, C.J.; Mueller, E.G.
Not all pseudouridine synthases are potently inhibited by RNA containing 5-fluorouridine
RNA
10
192-199
2004
Escherichia coli (P60340), Escherichia coli
Nurse, K.; Wrzesinski, J.; Bakin, A.; Lane, B.G.; Ofengand, J.
Purification, cloning, and properties of the tRNA PSI 55 synthase from Escherichia coli
RNA
1
102-112
1995
Escherichia coli (P60340), Escherichia coli
Gutgsell, N.; Englund, N.; Niu, L.; Kaya, Y.; Lane, B.G.; Ofengand, J.
Deletion of the Escherichia coli pseudouridine synthase gene truB blocks formation of pseudouridine 55 in tRNA in vivo, does not affect exponential growth, but confers a strong selective disadvantage in competition with wild-type cells
RNA
6
1870-1881
2000
Escherichia coli (P60340)
Fourmann, J.B.; Tillault, A.S.; Blaud, M.; Leclerc, F.; Branlant, C.; Charpentier, B.
Comparative study of two box H/ACA ribonucleoprotein pseudouridine-synthases: relation between conformational dynamics of the guide RNA, enzyme assembly and activity
PLoS One
8
e70313
2013
Pyrococcus abyssi
Joardar, A.; Jana, S.; Fitzek, E.; Gurha, P.; Majumder, M.; Chatterjee K, Geisler M, Gupta R.
Role of forefinger and thumb loops in production of Psi54 and Psi55 in tRNAs by archaeal Pus10
RNA
19
1279-1294
2013
Methanocaldococcus jannaschii (Q60346), Methanocaldococcus jannaschii DSM 2661 (Q60346)
Yang, W.; Zhao, S.; Jin, L.; Guo, Z.; Zhang, S.; Zhang, H.; Wang, D.
Purification, crystallization and preliminary X-ray crystallographic study of the tRNA pseudouridine synthase TruB from Streptococcus pneumoniae
Acta Crystallogr. Sect. F
69
759-761
2013
Streptococcus pneumoniae (Q97QJ3), Streptococcus pneumoniae
Friedt, J.; Leavens, F.M.; Mercier, E.; Wieden, H.J.; Kothe, U.
An arginine-aspartate network in the active site of bacterial TruB is critical for catalyzing pseudouridine formation
Nucleic Acids Res.
42
3857-3870
2014
Escherichia coli
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