Reference on EC 5.3.1.5 - xylose isomerase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Danno, G.
Studies on the D-glucose-isomerizing enzyme from Bacillus coagulans, strain HN-68. Part V. Comparative study on the three activities of D-glucose, D-xylose and D-ribose isomerization of the crystalline enzyme
Agric. Biol. Chem.
34
1805-1814
1970
Weizmannia coagulans, Weizmannia coagulans HN-68
-
Danno, G.
Studies on the D-glucose-isomerizing enzyme from Bacillus coagulans, strain HN-68. Part VI. The role of metal ions on the isomerization of D-glucose and D-xylose by the enzyme
Agric. Biol. Chem.
35
997-1006
1971
Weizmannia coagulans, Weizmannia coagulans HN-68
-
Danno, G.
Effect of sodium dodecyl sulfate on D-glucose-isomerizing enzyme from Bacillus coagulans, strain HN-68
Agric. Biol. Chem.
37
1849-1855
1973
Weizmannia coagulans, Weizmannia coagulans HN-68
-
Berman, H.M.; Rubin, B.H.; Carrell, H.L.; Glusker, J.P.
Crystallographic studies of D-xylose isomerase
J. Biol. Chem.
249
3983-3984
1974
Streptomyces sp.
Sanchez, S.; Smiley, K.L.
Properties of D-xylose isomerase from Streptomyces albus
Appl. Microbiol.
29
745-750
1975
Streptomyces albus, Streptomyces albus NRRL 5778
Yamanaka, K.
D-Xylose isomerase from Lactobacillus brevis
Methods Enzymol.
41B
466-471
1975
Levilactobacillus brevis
Hogue-Angeletti, R.A.
Subunit structure and amino acid composition of xylose isomerase from Streptomyces albus
J. Biol. Chem.
250
7814-7818
1975
Streptomyces albus
Yamanaka, K.; Takahara, N.
Purification and properties of D-xylose isomerase from Lactobacillus xylosus
Agric. Biol. Chem.
41
1909-1915
1977
Levilactobacillus brevis, Lactococcus lactis subsp. lactis
-
Suekane, M.; Tamura, M.; Tomimura, Ch.
Physico-chemical and enzymatic properties of purified glucose isomerases from Streptomyces olivochromogenes and Bacillus stearothermophilus
Agric. Biol. Chem.
42
909-917
1978
Geobacillus stearothermophilus, Streptomyces olivochromogenes
-
Chen, W.P.; Anderson, A.W.
Purification, immobilization, and some properties of glucose isomerase from Streptomyces flavogriseus
Appl. Environ. Microbiol.
38
1111-1119
1979
Streptomyces flavogriseus
Carrell, H.L.; Rubin, B.H.; Hurley, T.J.; Glusker, J.P.
X-ray crystal structure of D-xylose isomerase at 4-A resolution
J. Biol. Chem.
259
3230-3236
1984
Streptomyces rubiginosus
Schellenberg, G.D.; Sarthy, A.; Larson, A.E.; Backer, M.P.; Crabb, J.W.; Lidstrom, M.; Hall, B.D.; Furlong, C.E.
Xylose isomerase from Escherichia coli. Characterization of the protein and the structural gene
J. Biol. Chem.
259
6826-6832
1983
Escherichia coli
Vartak, H.G.; Srinivasan, M.C.; Powar, V.K.; Rele, M.V.; Khire, J.M.
Characterization of extracellular substrate specific glucose and xylose isomerases of Chainia
Biotechnol. Lett.
6
493-494
1984
Streptomyces sp.
-
Roman, G.N.; Jansen, N.B.; Hsiao, H.Y.; Tsao, G.T.
Kinetic studies of the enzymatic isomerization of xylose
Enzyme Microb. Technol.
7
129-133
1985
Bacillus sp. (in: Bacteria)
-
Stevis, P.E.; Ho, N.W.Y.
Overproduction of D-xylose isomerase in Escherichia coli by cloning the D-xylose isomerase gene
Enzyme Microb. Technol.
7
592-596
1985
Escherichia coli
-
Callens, M.; Kersters-Hilderson, H.; van Opstal, O.; de Bruyne, C.K.
Catalytic properties of D-xylose isomerase from Streptomyces violaceoruber
Enzyme Microb. Technol.
8
696-700
1986
Streptomyces violaceoruber
-
Kwon, H.J.; Kitada, M.; Horikoshi, K.
Purification and properties of the D-xylose isomerase from alkalophilic Bacillus No. KX-6
Agric. Biol. Chem.
51
1983-1989
1987
Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) No. KX-6
-
Farber, G.K.; Petsko, G.A.; Ringe, D.
The 3.0 A crystal structure of xylose isomerase from Streptomyces olivochromogenes
Protein Eng.
1
459-466
1987
Streptomyces olivochromogenes
Tucker, M.Y.; Tucker, M.P.; Himmel, M.E.; Grohmann, K.; Lastick, S.M.
Properties of genetically overproduced E. coli xylose isomerase
Biotechnol. Lett.
10
79-84
1988
Escherichia coli
-
Ghatge, M.; Mawal, Y.; Gaikwad, S.; Deshpande, V.
Immunoaffinity purification of glucose/xylose isomerase from Streptomyces
Appl. Biochem. Biotechnol.
31
11-20
1991
Streptomyces sp., Streptomyces sp. NCIM 2730
Khire, J.M.; Lachke, A.H.; Srinivasan, M.C.; Vartak, H.G.
Characterization of the purified extracellular D-xylose isomerase devoid of D-glucose isomerase from Chainia sp.
Appl. Biochem. Biotechnol.
23
41-52
1990
Streptomyces sp.
-
Liu, S.Y.; Wiegel, J.; Gherardine, F.C.
Purification and cloning of a thermostable xylose (glucose) isomerase with an acidic pH optimum from Thermoanaerobacterium strain JW/SL-YS 489
J. Bacteriol.
178
5938-5945
1996
Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium saccharolyticum B6A-RI, Thermoanaerobacterium saccharolyticum JW/SL-YS 489
Mrabet, N.T.
One-step purification of Actinoplanes missouriensis D-xylose isomerase by high-performance immobilized copper-affinity chromatography: functional analysis of surface histidine residues by site-directed mutagenesis
Biochemistry
31
2690-2702
1992
Actinoplanes missouriensis
Inyang, C.U.; Gebhart, U.; Obi, S.K.C.; Bisswanger, H.
Isolation and characterization of a D-glucose/xylose isomerase from a new thermophilic strain Streptomyces sp. (PLC)
Appl. Microbiol. Biotechnol.
43
632-638
1995
Streptomyces sp.
-
Lehmbacher, A.; Bisswanger, H.
Isolation and characterization of an extremely thermostable D-xylose isomerase from Thermus aquaticus HB8
J. Gen. Microbiol.
136
679-686
1990
Thermus aquaticus, Thermus aquaticus HB8
-
Kawai, Y.; Konishi, H.; Horitsu, H.; Sakurai, H.; Takamizawa, K.; Suzuki, T.; Kawai, K.
Purification and characterization of D-xylose isomerase from Bifidobacterium adolescentis
Biosci. Biotechnol. Biochem.
58
691-694
1994
Streptomyces phaeochromogenes, Bifidobacterium adolescentis
Hess, J.M.; Tchernajenko, V.; Vieille, C.; Zeikus, J.G.; Kelly, R.M.
Thermotoga neapolitana homotetrameric xylose isomerase is expressed as a catalytically active and thermostable dimer in Escherichia coli
Appl. Environ. Microbiol.
64
2357-2360
1998
Thermotoga neapolitana
Chauthaiwale, J.; Rao, M.
Production and purification of extracellular D-xylose isomerase from an alkaliphilic, thermophilic Bacillus sp.
Appl. Environ. Microbiol.
60
4495-4499
1994
Bacillus sp. (in: Bacteria)
Rangarajan, M.; Hartley, B.S.
Mechanism of D-fructose isomerization by Arthrobacter D-xylose isomerase
Biochem. J.
283
223-233
1992
Arthrobacter sp.
Kristo, P.; Saarelainen, R.; Fagerstrm, R.; Aho, S.; Korhola, M.
Protein purification, and cloning and characterization of the cDNA and gene for xylose isomerase of barley
Eur. J. Biochem.
237
240-246
1996
Hordeum vulgare
Lee, C.; Bagdasarian, M.; Meng, M.; Zeikus, J.G.
Catalytic mechanism of xylose (glucose) isomerase from Clostridium thermosulfurogenes. Characterization of the structural gene and function of active site histidine
J. Biol. Chem.
265
19082-19090
1990
Thermoanaerobacterium thermosulfurigenes
Jenkins, J.; Janin, J.; Rey, F.; Chiadmi, M.; van Tilbeurgh, H.; Lasters, I.; de Maeyer, M.; van Belle, D.; Wodak, S.J.; Lauwereys, M.; Stanssens, P.; Mrabet, N.T.; Snauwaert, J.; Matthyssens, G.; Lambeir, A.M.
Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites
Biochemistry
31
5449-5458
1992
Actinoplanes missouriensis
Van Tillbeurgh, H.; Jenkins, J.; Chiadmi, M.; Janin, J.; Wodak, S.J.; Mrabet, N.T.; Lambeir, A.M.
Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis
Biochemistry
31
5467-5471
1992
Actinoplanes missouriensis
Allen, K.N.; Lavie, A.; Petsko, G.A.; Ringe, D.
Design, synthesis, and characterization of a potent xylose isomerase inhibitor, D-threonohydroxamic acid, and high-resolution X-ray crystallographic structure of the enzyme-inhibitor complex
Biochemistry
34
3742-3749
1995
Streptomyces olivochromogenes
Collyer, C.A.; Goldberg, J.D.; Viehmann, H.; Blow, D.M.; Ramsden, N.G.; Fleet, G.W.J.; Montgomery, F.J.; Grice, P.
Anomeric specificity of D-xylose isomerase
Biochemistry
31
12211-12218
1992
Arthrobacter sp.
Bhosale, S.H.; Rao, M.B.; Deshpande, V.V.
Molecular industrial aspects of glucose isomerase
Microbiol. Rev.
60
280-300
1996
Actinomyces olivocinereus, Actinoplanes missouriensis, Actinoplanes sp., Aerobacter levanicum, Aeromonas hydrophila, Arthrobacter sp., Bacillus licheniformis, Brevibacterium helvolum, Brevibacterium pentosoaminoacidicum, Citrobacter freundii, Citrobacter intermedius, Corynebacterium sp., Desemzia incerta, Enterobacter cloacae, Escherichia coli, Gordonia rubripertincta, Klebsiella aerogenes, Lactiplantibacillus pentosus, Lactiplantibacillus plantarum, Lactobacillus gayonii, Lactobacillus lycopersici, Lactobacillus mannitopoeus, Lentilactobacillus buchneri, Leuconostoc mesenteroides, Limosilactobacillus fermentum, Microbacterium arborescens, Microbispora rosea, Micromonospora coerulea, Mycobacterium sp., Nocardia asteroides, Nocardiopsis dassonvillei, Paracolobacterium aerogenoides, Priestia megaterium, Pseudonocardia sp., Sarcina sp., Sphingomonas paucimobilis, Streptococcus venuceus, Streptomyces achromogenes, Streptomyces bikiniensis, Streptomyces bobili, Streptomyces californicus, Streptomyces echinatus, Streptomyces flaveus, Streptomyces flavovirens, Streptomyces fradiae, Streptomyces glaucescens, Streptomyces griseofuscus, Streptomyces griseolus, Streptomyces griseus, Streptomyces matensis, Streptomyces nivens, Streptomyces olivaceus, Streptomyces olivochromogenes, Streptomyces phaeochromogenes, Streptomyces platensis, Streptomyces roseochromogenus, Streptomyces rubiginosus, Streptomyces venezuelae, Streptomyces virginiae, Streptomyces wedmorensis, Streptosporangium album, Streptosporangium vulgare, Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacterium thermosulfurigenes, Thermopolyspora sp., Thermus thermophilus, Weizmannia coagulans, Xanthomonas sp., Zymomonas mobilis
Siddiqui, K.S.; Loviny-Anderton, T.; Rangarajan, M.; Hartley, B.S.
Arthrobacter D-xylose isomerase: chemical modification of carboxy groups and protein engineering of pH optimum
Biochem. J.
296
685-691
1993
Arthrobacter sp.
Varsani, L.; Cui, T.; Rangarajan, M.; Hartley, B.S.; Goldberg, J.; Collyer, C.; Blow, D.M.
Arthrobacter D-xylose isomerase: protein-engineered subunit interfaces
Biochem. J.
291
575-583
1993
Arthrobacter sp.
Lloyd, L.F.; Gallay, O.S.; Akins, J.; Zeikus, J.G.
Crystallization and preliminary X-ray diffraction studies of xylose isomerase from Thermoanaerobium thermosulfurigenes strain 4B
J. Mol. Biol.
240
504-506
1994
Thermoanaerobacterium thermosulfurigenes
Lavie, A.; Allen, K.N.; Petsko, G.A.; Ringe, D.
X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis
Biochemistry
33
5469-5480
1994
Streptomyces olivochromogenes
Henrick, K.; Collyer, C.A.; Blow, D.M.
Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitor xylitol and D-sorbitol at 2.5 A and 2.3 A resolution, respectively
J. Mol. Biol.
208
129-157
1989
Arthrobacter sp.
Lehmacher, A.; Bisswanger, H.
Comparative kinetics of D-xylose and D-glucose isomerase activities of the D-xylose isomerase from Thermus aquaticus HB8
Biol. Chem. Hoppe-Seyler
371
527-536
1990
Thermus aquaticus, Thermus aquaticus HB8
Smith, C.A.; Rangarajan, M.; Hartley, B.S.
D-Xylose (D-glucose) isomerase from Arthrobacter strain N.R.R.L. B3728
Biochem. J.
277
255-261
1991
Arthrobacter sp.
Kitada, M.; Dobashi, Y.; Horikoshi, K.
Enzymatic properties of D-xylose isomerase from a thermophilic alkalophile, Bacillus TX-3
Agric. Biol. Chem.
53
1461-1468
1989
Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) TX-3
-
Chang, C.; Song, H.K.; Park, B.C.; Lee, D.S.; Suh, S.W.
A thermostable xylose isomerase from Thermus caldophilus: biochemical characterization, crystallization and preliminary X-ray analysis
Acta Crystallogr. Sect. D
55
294-296
1999
Thermus caldophilus
Zhu, X.; Teng, M.; Niu, L.; Xu, C.; Wang, Y.
Structure of xylose isomerase from Streptomyces diastaticus no. 7 strain M1033 at 1.85 A resolution
Acta Crystallogr. Sect. D
56
129-136
2000
Streptomyces diastaticus No. 7, Streptomyces diastaticus No. 7 M1033
-
Pawar, S.A.; Deshpande, V.V.
Characterization of acid-induced unfolding intermediates of glucose/xylose isomerase
Eur. J. Biochem.
267
6331-6338
2000
Streptomyces sp., Streptomyces sp. NCIM 2730
Lonn, A.; Gardonyi, M.; van Zyl, W.; Hahn-Hagerdal, B.; Otero, R.C.
Cold adaptation of xylose isomerase from Thermus thermophilus through random PCR mutagenesis. Gene cloning and protein characterization
Eur. J. Biochem.
269
157-163
2002
Thermus thermophilus
Chang, C.; Park, B.C.; Lee, D.S.; Suh, S.W.
A thermostable xylose isomerase from Thermus thermophilus: biochemical characterization, crystallization, and preliminary X-ray analyses
J. Biochem. Mol. Biol.
31
600-603
1998
Thermus thermophilus
-
Vuolanto, A.; Uotila, S.; Leisola, M.; Visuri, K.
Solubility and crystallization of xylose isomerase from Streptomyces rubiginosus
J. Crystal Growth
257
403-411
2003
Streptomyces rubiginosus
-
Cha, J.
Contribution of second metal binding site for metal specificity of D-xylose isomerase
J. Microbiol. Biotechnol.
9
757-763
1999
Streptomyces rubiginosus
-
Chang, C.; Park, B.C.; Lee, D.S.; Suh, S.W.
Crystal structures of thermostable xylose isomerases from Thermus caldophilus and Thermus thermophilus: Possible structural determinants of thermostability
J. Mol. Biol.
288
623-634
1999
Thermus thermophilus, Thermus caldophilus
Sapunova, L.I.; Parakhnya, E.V.; Kazakevich, I.O.; Lobanok, A.G.
Biosynthesis and some properties of the xylose (glucose) isomerases of Streptomyces viridobrunneus GI-97 and Streptomyces sp. 1 and 32
Microbiology
68
270-275
1999
Streptomyces sp. 1, Streptomyces sp. 32, Streptomyces viridobrunneus
-
Cha, J.; Batt, C.A.
Lowering the pH optimum of D-xylose isomerase: the effect of mutations of the negatively charged residues
Mol. Cells
8
374-382
1998
Streptomyces rubiginosus
Straatsma, J.; Vellenga, K.; Witt, H.G.J.de; Joosten, G.E.
Isomerization of glucose to fructose. 2. Optimization of reaction conditions in the production of high fructose syrup by isomerization of glucose catalyzed by a whole cell immobilized glucose isomerase catalyst
Ind. Eng. Chem. Process Des. Dev.
22
356-361
1983
Streptomyces phaeochromogenes, Actinoplanes missouriensis, Weizmannia coagulans, Streptomyces rubiginosus
-
Hanson, B.L.; Langan, P.; Katz, A.K.; Li, X.; Harp, J.M.; Glusker, J.P.; Schoenborn, B.P.; Bunick, G.J.
A preliminary time-of-flight neutron diffraction study of Streptomyces rubiginosus D-xylose isomerase
Acta Crystallogr. Sect. D
60
241-249
2004
Streptomyces rubiginosus
Joo, G.J.; Shin, J.H.; Heo, G.Y.; Kwak, Y.Y.; Choi, J.H.; Rhee, I.K.
Purification and characterization of a thermostable xylose (glucose) isomerase from Streptomyces chibaensis J-59
Agric. Chem. Biotechnol.
44
113-118
2001
Streptomyces corchorusii, Streptomyces corchorusii J-59
-
Park, J.H.; Batt, C.A.
Restoration of a defective Lactococcus lactis xylose isomerase
Appl. Environ. Microbiol.
70
4318-4325
2004
Lactococcus lactis, Lactococcus lactis IO-1 (Xyl+), Lactococcus lactis 210 (Xyl-)
Fenn, T.D.; Ringe, D.; Petsko, G.A.
Xylose isomerase in substrate and inhibitor michaelis states: atomic resolution studies of a metal-mediated hydride shift
Biochemistry
43
6464-6474
2004
Streptomyces olivochromogenes (P15587), Streptomyces olivochromogenes
Santa, H.; Kammonen, J.; Lehtonen, O.; Karimaki, J.; Pastinen, O.; Leisola, M.; Turunen, O.
Stochastic boundary molecular dynamics simulation of L-ribose in the active site of Actinoplanes missouriensis xylose isomerase and its Val135Asn mutant with improved reaction rate
Biochim. Biophys. Acta
1749
65-73
2005
Actinoplanes missouriensis (P12851), Actinoplanes missouriensis
Vilonen, K.M.; Vuolanto, A.; Jokela, J.; Leisola, M.S.; Krause, A.O.
Enhanced glucose to fructose conversion in acetone with xylose isomerase stabilized by crystallization and cross-linking
Biotechnol. Prog.
20
1555-1560
2004
Streptomyces rubiginosus
Epting, K.L.; Vieille, C.; Zeikus, J.G.; Kelly, R.M.
Influence of divalent cations on the structural thermostability and thermal inactivation kinetics of class II xylose isomerases
FEBS J.
272
1454-1464
2005
Bacillus licheniformis, Thermoanaerobacterium thermosulfurigenes, Escherichia coli, Thermotoga neapolitana
Voronovsky, A.Y.; Ryabova, O.B.; Verba, O.V.; Ishchuk, O.P.; Dmytruk, K.V.; Sibirny, A.A.
Expression of xylA genes encoding xylose isomerases from Escherichia coli and Streptomyces coelicolor in the methylotrophic yeast Hansenula polymorpha
FEMS Yeast Res.
5
1055-1062
2005
Escherichia coli, Streptomyces coelicolor
Kuyper, M.; Hartog, M.M.P.; Toirkens, M.J.; Almering, M.J.H.; Winkler, A.A.; van Dijken, J.P.; Pronk, J.T.
Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation
FEMS Yeast Res.
5
399-409
2005
Piromyces sp.
Joo, G.J.; Shin, S.; Heo, G.Y.; Kim, Y.M.; Rhee, I.K.
Molecular cloning and expression of a thermostable xylose (glucose) isomerase gene, xylA, from Streptomyces chibaensis J-59
J. Microbiol.
43
34-37
2005
Streptomyces corchorusii, Streptomyces corchorusii J-59
Karimaki, J.; Parkkinen, T.; Santa, H.; Pastinen, O.; Leisola, M.; Rouvinen, J.; Turunen, O.
Engineering the substrate specificity of xylose isomerase
Protein Eng. Des. Sel.
17
861-869
2004
Actinoplanes missouriensis, Streptomyces rubiginosus (P24300), Streptomyces rubiginosus
Karhumaa, K.; Hahn-Haegerdal, B.; Gorwa-Grauslund, M.F.
Investigation of limiting metabolic steps in the utilization of xylose by recombinant Saccharomyces cerevisiae using metabolic engineering
Yeast
22
359-368
2005
Saccharomyces cerevisiae
van Maris, A.J.; Winkler, A.A.; Kuyper, M.; de Laat, W.T.; van Dijken, J.P.; Pronk, J.T.
Development of efficient xylose fermentation in Saccharomyces cerevisiae: xylose isomerase as a key component
Adv. Biochem. Eng. Biotechnol.
108
179-204
2007
Thermus thermophilus, no activity in Saccharomyces cerevisiae, Piromyces sp.
Sapunova, L.I.; Lobanok, A.G.; Kazakevich, I.O.; Shlyakhotko, E.A.; Evtushenkov, A.N.
Biosynthetic features and properties of xylose isomerases from Arthrobacter nicotianae, Escherichia coli, and Erwinia carotovora subsp. atroseptica
Appl. Biochem. Microbiol.
42
246-251
2006
Escherichia coli, Escherichia coli HB101xylA, Glutamicibacter nicotianae, Glutamicibacter nicotianae BIM B-5, Pectobacterium atrosepticum, Pectobacterium atrosepticum jn42xylA
Kawaguchi, H.; Vertes, A.A.; Okino, S.; Inui, M.; Yukawa, H.
Engineering of a xylose metabolic pathway in Corynebacterium glutamicum
Appl. Environ. Microbiol.
72
3418-3428
2006
Escherichia coli
Yanase, H.; Sato, D.; Yamamoto, K.; Matsuda, S.; Yamamoto, S.; Okamoto, K.
Genetic engineering of Zymobacter palmae for production of ethanol from xylose
Appl. Environ. Microbiol.
73
2592-2599
2007
Escherichia coli
Meilleur, F.; Snell, E.H.; van der Woerd, M.J.; Judge, R.A.; Myles, D.A.
A quasi-Laue neutron crystallographic study of D-xylose isomerase
Eur. Biophys. J.
35
601-609
2006
Streptomyces rubiginosus
Snell, E.H.; van der Woerd, M.J.; Damon, M.; Judge, R.A.; Myles, D.A.; Meilleur, F.
Optimizing crystal volume for neutron diffraction: D-xylose isomerase
Eur. Biophys. J.
35
621-632
2006
Streptomyces rubiginosus
Dmytruk, O.V.; Voronovsky, A.Y.; Abbas, C.A.; Dmytruk, K.V.; Ishchuk, O.P.; Sibirny, A.A.
Overexpression of bacterial xylose isomerase and yeast host xylulokinase improves xylose alcoholic fermentation in the thermotolerant yeast Hansenula polymorpha
FEMS Yeast Res.
8
165-173
2008
Escherichia coli, no activity in Hansenula polymorpha, Escherichia coli DH5-alpha, no activity in Hansenula polymorpha CBS4732s leu2-2
Karhumaa, K.; Sanchez, R.G.; Hahn-Hagerdal, B.; Gorwa-Grauslund, M.
Comparison of the xylose reductase-xylitol dehydrogenase and the xylose isomerase pathways for xylose fermentation by recombinant Saccharomyces cerevisiae
Microb. Cell Fact.
6
5-15
2007
Piromyces sp.
Katz, A.K.; Li, X.; Carrell, H.L.; Hanson, B.L.; Langan, P.; Coates, L.; Schoenborn, B.P.; Glusker, J.P.; Bunick, G.J.
Locating active-site hydrogen atoms in D-xylose isomerase: time-of-flight neutron diffraction
Proc. Natl. Acad. Sci. USA
103
8342-8347
2006
Streptomyces rubiginosus (P24300), Streptomyces rubiginosus
Meijnen, J.P.; de Winde, J.H.; Ruijssenaars, H.J.
Engineering Pseudomonas putida S12 for efficient utilization of D-xylose and L-arabinose
Appl. Environ. Microbiol.
74
5031-5037
2008
Escherichia coli
Madhavan, A.; Tamalampudi, S.; Srivastava, A.; Fukuda, H.; Bisaria, V.S.; Kondo, A.
Alcoholic fermentation of xylose and mixed sugars using recombinant Saccharomyces cerevisiae engineered for xylose utilization
Appl. Microbiol. Biotechnol.
82
1037-1047
2009
Orpinomyces sp. (B7SLY1)
Madhavan, A.; Tamalampudi, S.; Ushida, K.; Kanai, D.; Katahira, S.; Srivastava, A.; Fukuda, H.; Bisaria, V.S.; Kondo, A.
Xylose isomerase from polycentric fungus Orpinomyces: gene sequencing, cloning, and expression in Saccharomyces cerevisiae for bioconversion of xylose to ethanol
Appl. Microbiol. Biotechnol.
82
1067-78
2008
Orpinomyces sp. (B7SLY1)
Kovalevsky, A.Y.; Katz, A.K.; Carrell, H.L.; Hanson, L.; Mustyakimov, M.; Fisher, S.Z.; Coates, L.; Schoenborn, B.P.; Bunick, G.J.; Glusker, J.P.; Langan, P.
Hydrogen location in stages of an enzyme-catalyzed reaction: time-of-flight neutron structure of D-xylose isomerase with bound D-xylulose
Biochemistry
47
7595-7597
2008
Streptomyces rubiginosus (P24300)
Ravikumar, S.; Srikumar, K.
Xerophytic Cereus pterogonus xylose isomerase is a thermostable enzyme
Chem. Nat. Compd.
44
213-215
2008
Deamia testudo
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Malek, K.; Coppens, M.O.
Molecular simulations of solute transport in xylose isomerase crystals
J. Phys. Chem. B
112
1549-1554
2008
Streptomyces rubiginosus (P24300)
Sapunova, L.I.; Tamkovich, I.O.; Lobanok, A.G.
Catabolite repression of xylose isomerase synthesis in Arthrobacter ureafaciens
Microbiology
77
268-274
2008
Paenarthrobacter ureafaciens
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Ding, M.; Teng, Y.; Yin, Q.; Chen, W.; Zhao, F.
Identification, expression, and characterization of the highly conserved D-xylose isomerase in animals
Acta Biochim. Biophys. Sin.
41
116-122
2009
Ciona intestinalis
Brat, D.; Boles, E.; Wiedemann, B.
Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae
Appl. Environ. Microbiol.
75
2304-2311
2009
Piromyces sp., Lachnoclostridium phytofermentans
Lopes, M.S.; Gomez, J.G.; Silva, L.F.
Cloning and overexpression of the xylose isomerase gene from Burkholderia sacchari and production of polyhydroxybutyrate from xylose
Can. J. Microbiol.
55
1012-1015
2009
Paraburkholderia sacchari (B6VCW7), Paraburkholderia sacchari, Paraburkholderia sacchari IPT101 (B6VCW7)
Xu, W.; Yan, M.; Xu, L.; Ding, L.; Ouyang, P.
Engineering the activity of thermophilic xylose isomerase by site-directed mutation at subunit interfaces
Enzyme Microb. Technol.
44
77-83
2009
Thermus thermophilus (P26997)
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Kim, S.; Yun, J.; Kim, S.; Seo, J.; Park, J.
Production of xylitol from D-xylose and glucose with recombinant Corynebacterium glutamicum
Enzyme Microb. Technol.
46
366-371
2010
no activity in Corynebacterium glutamicum, Scheffersomyces stipitis
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Bellissimi, E.; van Dijken, J.P.; Pronk, J.T.; van Maris, A.J.
Effects of acetic acid on the kinetics of xylose fermentation by an engineered, xylose-isomerase-based Saccharomyces cerevisiae strain
FEMS Yeast Res.
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358-364
2009
Piromyces sp.
Nakata, T.; Miyafuji, H.; Saka, S.
Ethanol production with ?-xylosidase, xylose isomerase, and Saccharomyces cerevisiae from the hydrolysate of Japanese beech after hot-compressed water treatment
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289-294
2009
Saccharomyces cerevisiae
Rozanov, A.; Zagrebelnyc, S.; Beklemishchev, A.
Cloning of Escherichia coli K12 xylose isomerase (glucose isomerase) and studying the enzymatic properties of its expression product
Prikl. Biokhim. Mikrobiol.
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38-44
2009
Escherichia coli K-12
Xu, W.; Shao, R.; Li, Y.; Yan, M.; Ouyang, P.
Study on the substrate specificity of xylose isomerase N91D mutant from Thermus thermophilus HB8 by molecular simulation
Adv. Mater. Res.
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2011
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
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Ravikumar, S.; Vikramathithan, J.; Srikumar, K.
Purification and characterization of a novel thermostable xylose isomerase from Opuntia vulgaris Mill
Appl. Biochem. Biotechnol.
164
593-603
2011
Opuntia ficus-indica, Opuntia vulgaris
Sapunova, L.; Tamkovich, I.; Lobanok, A.
Some aspects of xylose isomerase constitutive biosynthesis in Arthrobacter nicotianae
Appl. Biochem. Microbiol.
46
400-404
2010
Glutamicibacter nicotianae, Glutamicibacter nicotianae BIM V-5
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Ha, S.J.; Kim, S.R.; Choi, J.H.; Park, M.S.; Jin, Y.S.
Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction in vitro
Appl. Microbiol. Biotechnol.
92
77-84
2011
Bacteroides stercoris, Bacteroides stercoris HJ-15
Fan, L.; Zhang, Y.; Qu, W.; Wang, J.; Shao, W.
Cloning and analysis of the xylAB operon and characterization of xylose isomerase from Thermoanaerobacter ethanolicus
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593-598
2011
Thermoanaerobacter ethanolicus (D2DK62), Thermoanaerobacter ethanolicus, Thermoanaerobacter ethanolicus JW200 (ATCC 31550) (D2DK62)
Harris, J.M.; Epting, K.L.; Kelly, R.M.
N-terminal fusion of a hyperthermophilic chitin-binding domain to xylose isomerase from Thermotoga neapolitana enhances kinetics and thermostability of both free and immobilized enzymes
Biotechnol. Prog.
26
993-1000
2010
Thermotoga neapolitana, Thermotoga neapolitana 5068
Umemoto, Y.; Shibata, T.; Araki, T.
D-Xylose isomerase from a marine bacterium, Vibrio sp. strain XY-214, and D-xylulose production from beta-1,3-xylan
Mar. Biotechnol.
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Vibrio sp. (C7G532), Vibrio sp. XY-214 (C7G532)
Ravikumar, S.; Shyamala, S.; Muthuraman, P.; Srikumar, K.
Isolation, purification, and characterization of thermophilic T80 isoenzyme of xylose isomerase from the xerophyte Cereus pterogonus
Prep. Biochem. Biotechnol.
41
122-137
2011
Deamia testudo
Kovalevsky, A.Y.; Hanson, L.; Fisher, S.Z.; Mustyakimov, M.; Mason, S.A.; Forsyth, V.T.; Blakeley, M.P.; Keen, D.A.; Wagner, T.; Carrell, H.L.; Katz, A.K.; Glusker, J.P.; Langan, P.
Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: a joint x-ray and neutron diffraction study
Structure
18
688-699
2010
Streptomyces rubiginosus (P24300)
Cho, J.W.; Han, B.G.; Park, S.Y.; Kim, S.J.; Kim, M.D.; Lee, B.I.
Overexpression, crystallization and preliminary X-ray crystallographic analysis of a putative xylose isomerase from Bacteroides thetaiotaomicron
Acta Crystallogr. Sect. F
69
1127-1130
2013
Bacteroides thetaiotaomicron (Q8A9M2), Bacteroides thetaiotaomicron, Bacteroides thetaiotaomicron DSM 2079 (Q8A9M2)
Dos Reis, C.V.; Bernardes, A.; Polikarpov, I.
Expression, purification, crystallization and preliminary X-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase
Acta Crystallogr. Sect. F
69
588-591
2013
Bifidobacterium adolescentis (A1A0H0), Bifidobacterium adolescentis
Lee, S.M.; Jellison, T.; Alper, H.S.
Directed evolution of xylose isomerase for improved xylose catabolism and fermentation in the yeast Saccharomyces cerevisiae
Appl. Environ. Microbiol.
78
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2012
Piromyces sp.
Toteva, M.M.; Silvaggi, N.R.; Allen, K.N.; Richard, J.P.
Binding energy and catalysis by D-xylose isomerase: kinetic, product, and X-ray crystallographic analysis of enzyme-catalyzed isomerization of (R)-glyceraldehyde
Biochemistry
50
10170-10181
2011
Streptomyces rubiginosus (P24300)
de Figueiredo Vilela, L.; de Mello, V.M.; Reis, V.C.; Bon, E.P.; Goncalves Torres, F.A.; Neves, B.C.; Eleutherio, E.C.
Functional expression of Burkholderia cenocepacia xylose isomerase in yeast increases ethanol production from a glucose-xylose blend
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Burkholderia cenocepacia
Staudigl, P.; Haltrich, D.; Peterbauer, C.K.
L-arabinose isomerase and D-xylose isomerase from Lactobacillus reuteri: Characterization, coexpression in the food grade host Lactobacillus plantarum, and application in the conversion of D-galactose and D-glucose
J. Agric. Food Chem.
62
1617-1624
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Limosilactobacillus reuteri, Limosilactobacillus reuteri DSM Z 17509
Patel, D.H.; Cho, E.J.; Kim, H.M.; Choi, I.S.; Bae, H.J.
Engineering of the catalytic site of xylose isomerase to enhance bioconversion of a non-preferential substrate
Protein Eng. Des. Sel.
25
331-336
2012
Thermus thermophilus (P26997), Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579 (P26997)
Waltman, M.; Yang, Z.; Langan, P.; Graham, D.; Kovalevsky, A.
Engineering acidic Streptomyces rubiginosus D-xylose isomerase by rational enzyme design
Protein Eng.
27
59-64
2014
Streptomyces rubiginosus
Vieille, C.; Sriprapundh, D.; Savchenko, A.; Kang, S.; Krishnamurthy, H.; Gregory Zeikus, J.
Thermostability mechanisms in enzymes from Thermotoga neapolitana and Pyrococcus furiosus
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245-249
2001
Thermotoga neapolitana (P45687)
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Munshi, P.; Snell, E.H.; van der Woerd, M.J.; Judge, R.A.; Myles, D.A.; Ren, Z.; Meilleur, F.
Neutron structure of the cyclic glucose-bound xylose isomerase E186Q mutant
Acta Crystallogr. Sect. D
70
414-420
2014
Streptomyces rubiginosus (P24300)
Dekker, K.; Sugiura, A.; Yamagata, H.; Sakaguchi, K.; Udaka, S.
Efficient production of thermostable Thermus thermophilus xylose isomerase in Escherichia coli and Bacillus brevis
Appl. Microbiol. Biotechnol.
36
727-732
1992
Thermus thermophilus
Sasaki, Y.; Takagi, T.; Motone, K.; Kuroda, K.; Ueda, M.
Enhanced direct ethanol production by cofactor optimization of cell surface-displayed xylose isomerase in yeast
Biotechnol. Prog.
33
1068-1076
2017
Clostridium cellulovorans (D9SR73), Clostridium cellulovorans, Clostridium cellulovorans DSM 3052 (D9SR73)
Verhoeven, M.; Lee, M.; Kamoen, L.; Van Den Broek, M.; Janssen, D.; Daran, J.; Van Maris, A.; Pronk, J.
Mutations in PMR1 stimulate xylose isomerase activity and anaerobic growth on xylose of engineered Saccharomyces cerevisiae by influencing manganese homeostasis
Sci. Rep.
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46155
2017
Piromyces sp. E2 (Q9P8C9)
Langan, P.; Sangha, A.K.; Wymore, T.; Parks, J.M.; Yang, Z.K.; Hanson, B.L.; Fisher, Z.; Mason, S.A.; Blakeley, M.P.; Forsyth, V.T.; Glusker, J.P.; Carrell, H.L.; Smith, J.C.; Keen, D.A.; Graham, D.E.; Kovalevsky, A.
L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase X-ray/neutron crystallographic and molecular simulation study
Structure
22
1287-1300
2014
Streptomyces rubiginosus (P24300)
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