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Information on EC 4.1.1.43 - phenylpyruvate decarboxylase and Organism(s) Saccharomyces cerevisiae and UniProt Accession Q06408

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EC Tree
     4 Lyases
         4.1 Carbon-carbon lyases
             4.1.1 Carboxy-lyases
                4.1.1.43 phenylpyruvate decarboxylase
IUBMB Comments
The enzyme from the bacterium Azospirillum brasilense also acts on some other substrates, including (indol-3-yl)pyruvate, with much lower efficiency. However, it only possesses classical Michaelis-Menten kinetics with phenylpyruvate. Aliphatic 2-oxo acids longer that 2-oxohexanoate are not substrates. cf. EC 4.1.1.74, indolepyruvate decarboxylase.
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Saccharomyces cerevisiae
UNIPROT: Q06408
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Word Map
The taxonomic range for the selected organisms is: Saccharomyces cerevisiae
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota
Synonyms
aro10, phenylpyruvate decarboxylase, ydr380w, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
phenylpyruvate decarboxylase
-
Decarboxylase, phenylpyruvate
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
decarboxylation
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
phenylpyruvate carboxy-lyase (phenylacetaldehyde-forming)
The enzyme from the bacterium Azospirillum brasilense also acts on some other substrates, including (indol-3-yl)pyruvate, with much lower efficiency. However, it only possesses classical Michaelis-Menten kinetics with phenylpyruvate. Aliphatic 2-oxo acids longer that 2-oxohexanoate are not substrates. cf. EC 4.1.1.74, indolepyruvate decarboxylase.
CAS REGISTRY NUMBER
COMMENTARY hide
37289-45-5
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
2-oxo-4-phenylbutanoic acid
?
show the reaction diagram
9% activity compared to phenylpyruvate
-
-
?
2-oxobutanoic acid
?
show the reaction diagram
0.2% activity compared to phenylpyruvate
-
-
?
2-oxohexanoic acid
?
show the reaction diagram
6% activity compared to phenylpyruvate
-
-
?
2-oxopentanoic acid
?
show the reaction diagram
1% activity compared to phenylpyruvate
-
-
?
3-methyl-2-oxobutanoic acid
?
show the reaction diagram
1% activity compared to phenylpyruvate
-
-
?
3-methyl-2-oxopentanoic acid
?
show the reaction diagram
2% activity compared to phenylpyruvate
-
-
?
4-hydroxyphenylpyruvate
4-hydroxyphenylacetaldehyde + CO2
show the reaction diagram
63% activity compared to phenylpyruvate
-
-
?
4-methyl-2-oxopentanoic acid
?
show the reaction diagram
6% activity compared to phenylpyruvate
-
-
?
4-methylthio-2-oxobutanoic acid
?
show the reaction diagram
6% activity compared to phenylpyruvate
-
-
?
benzoylformic acid
?
show the reaction diagram
0.2% activity compared to phenylpyruvate
-
-
?
indole-3-pyruvate
indoleacetaldehyde + CO2
show the reaction diagram
preferred substrate, 100% activity
-
-
?
Phenylpyruvate
Phenylacetaldehyde + CO2
show the reaction diagram
preferred substrate, 100% activity
-
-
?
pyruvic acid
?
show the reaction diagram
0.02% activity compared to phenylpyruvate
-
-
?
Phenylpyruvate
Phenylacetaldehyde + CO2
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
Phenylpyruvate
Phenylacetaldehyde + CO2
show the reaction diagram
-
first step in the Ehrlich pathway
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
thiamine diphosphate
dependent on
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.09
2-oxo-4-phenylbutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
5.5 - 7.6
2-oxobutanoic acid
0.17 - 1
2-oxohexanoic acid
0.37 - 2.1
2-oxopentanoic acid
8.5
3-methyl-2-oxobutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
3.1
3-methyl-2-oxopentanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.09
4-hydroxyphenylpyruvate
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.9
4-methyl-2-oxopentanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.64
4-methylthio-2-oxobutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.03
Indole-3-pyruvate
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.054 - 0.8
phenylpyruvate
5.5 - 25
Pyruvic acid
0.062 - 0.48
phenylpyruvate
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.7
2-oxo-4-phenylbutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.04 - 3.9
2-oxobutanoic acid
0.41 - 8.8
2-oxohexanoic acid
0.39 - 5.2
2-oxopentanoic acid
19
3-methyl-2-oxobutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
11
3-methyl-2-oxopentanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
11
4-hydroxyphenylpyruvate
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
10
4-methyl-2-oxopentanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
7.7
4-methylthio-2-oxobutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.14 - 5.4
Indole-3-pyruvate
0.85 - 20
phenylpyruvate
0.064 - 0.45
Pyruvic acid
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
19
2-oxo-4-phenylbutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.007 - 0.52
2-oxobutanoic acid
0.42 - 13
2-oxohexanoic acid
0.4 - 3.7
2-oxopentanoic acid
2.2
3-methyl-2-oxobutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
3.5
3-methyl-2-oxopentanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
125
4-hydroxyphenylpyruvate
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
11
4-methyl-2-oxopentanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
12
4-methylthio-2-oxobutanoic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.35
benzoylformic acid
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
200
Indole-3-pyruvate
wild type enzyme, in 100 mM KPO4 buffer (pH 7.0), 1 mM MgSO4, 0.5 mM thiamine diphosphate, at pH 7.0 and 30°C
0.03 - 200
phenylpyruvate
0.003 - 0.07
Pyruvic acid
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
57000
x * 57000, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 57000, SDS-PAGE
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
E545L
the mutant shows 730fold decrease in kcat (phenylpyruvate) and 38fold decrease in kcat (indole-3-pyruvate) compared to the wild type enzyme
I335Y
compared to the wild type enzyme, the mutant exhibits 0.6% catalytic efficiency with phenylpyruvate, 33% catalytic efficiency with 2-oxohexanoic acid, 213% catalytic efficiency with 2-oxopentanoic acid, 1.7% catalytic efficiency with 2-oxobutanoic acid, and 7% catalytic efficiency with pyruvic acid
I335Y/M624W
compared to the wild type enzyme, the mutant exhibits 0.02% catalytic efficiency with phenylpyruvate, 2.3% catalytic efficiency with 2-oxohexanoic acid, 25% catalytic efficiency with 2-oxopentanoic acid, no activity with 2-oxobutanoic acid, and 59% catalytic efficiency with pyruvic acid
M624W
compared to the wild type enzyme, the mutant exhibits 3.4% catalytic efficiency with phenylpyruvate, 32% catalytic efficiency with 2-oxohexanoic acid, 131% catalytic efficiency with 2-oxopentanoic acid, 1.4% catalytic efficiency with 2-oxobutanoic acid, and 152% catalytic efficiency with pyruvic acid
Q448W
compared to the wild type enzyme, the mutant exhibits 45% catalytic efficiency with phenylpyruvate, 16% catalytic efficiency with 2-oxohexanoic acid, 231% catalytic efficiency with 2-oxopentanoic acid, 62% catalytic efficiency with 2-oxobutanoic acid, and 130% catalytic efficiency with pyruvic acid
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
Ni-NTA column chromatography
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli BL21(DE3)pLysS cells
expressed in Escherichia coli
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
synthesis
-
overexpression of phenylpyruvate decarboxylase ARO10 and alcoholdehydrogenase ADH2 genes of Saccharomyces cerevisiae in Kluyveromyces marxianus results in synthesis of 1 g/l 2-phenylethanol
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Vuralhan, Z.; Morais, M.A.; Tai, S.L.; Piper, M.D.; Pronk, J.T.
Identification and characterization of phenylpyruvate decarboxylase genes in Saccharomyces cerevisiae
Appl. Environ. Microbiol.
69
4534-4541
2003
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Hwang, J.Y.; Park, J.; Seo, J.H.; Cha, M.; Cho, B.K.; Kim, J.; Kim, B.G.
Simultaneous synthesis of 2-phenylethanol and L-homophenylalanine using aromatic transaminase with yeast Ehrlich pathway
Biotechnol. Bioeng.
102
1323-1329
2008
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Kneen, M.; Stan, R.; Yep, A.; Tyler, R.; Saehuan, C.; McLeish, M.
Characterization of a thiamin diphosphate-dependent phenylpyruvate decarboxylase from Saccharomyces cerevisiae
FEBS J.
278
1842-1853
2011
Saccharomyces cerevisiae (Q06408), Saccharomyces cerevisiae
Manually annotated by BRENDA team
Kim, T.; Lee, S.; Oh, M.
Biosynthesis of 2-phenylethanol from glucose with genetically engineered Kluyveromyces marxianus
Enzyme Microb. Technol.
61-62
44-47
2014
Saccharomyces cerevisiae, Saccharomyces cerevisiae YPH499
-
Manually annotated by BRENDA team