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Information on EC 3.5.1.88 - peptide deformylase and Organism(s) Oryza sativa and UniProt Accession Q5VNN5

for references in articles please use BRENDA:EC3.5.1.88
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EC Tree
     3 Hydrolases
         3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
             3.5.1 In linear amides
                3.5.1.88 peptide deformylase
IUBMB Comments
Requires Fe(II). Also requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Differs in substrate specifity from EC 3.5.1.31 (formylmethionine deformylase).
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This record set is specific for:
Oryza sativa
UNIPROT: Q5VNN5
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Word Map
The taxonomic range for the selected organisms is: Oryza sativa
The enzyme appears in selected viruses and cellular organisms
Synonyms
peptide deformylase, hspdf, pdf-1, polypeptide deformylase, pdf1a, hppdf, pdf1b, pdf-2, atdef2, vp16 pdf, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
peptide deformylase
-
peptide deformylase 1B
-
deformylase, peptide N-formylmethionine
-
-
-
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hydrolase, aminoacyl-transfer ribonucleate
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-
-
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PDF
-
-
-
-
peptide deformylase
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peptide deformylase 1A
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Polypeptide deformylase
-
-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
deformylation
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hydrolysis of amide bond
-
-
-
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deformylation
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SYSTEMATIC NAME
IUBMB Comments
formyl-L-methionyl peptide amidohydrolase
Requires Fe(II). Also requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Differs in substrate specifity from EC 3.5.1.31 (formylmethionine deformylase).
CAS REGISTRY NUMBER
COMMENTARY hide
369636-51-1
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37289-08-0
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9032-86-4
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9054-98-2
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
additional information
?
-
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
UniProt
Manually annotated by BRENDA team
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
protoplasts are prepared
protoplasts are prepared
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
into the pGEM vector, a GFP cassette is added in frame
into the pGEM vector, a GFP cassette is added in frame
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Moon, S.; Giglione, C.; Lee, D.Y.; An, S.; Jeong, D.H.; Meinnel, T.; An, G.
Rice peptide deformylase PDF1B is crucial for development of chloroplasts
Plant Cell Physiol.
49
1536-1546
2008
Oryza sativa (B6RGY0), Oryza sativa (Q5VNN5), Oryza sativa
Manually annotated by BRENDA team