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proteolytic degradation of proteins
proteolytic degradation of proteins
conserved metal-binding site HEXXH, selective degradation, mechanism
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proteolytic degradation of proteins
degradation of hydrophobic membrane-spanning segments of misfolded mitochondrial membrane proteins
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proteolytic degradation of proteins
enzyme shows overlapping substrate specificity with the ATP-dependent PIM1 protease located in the mitochondrial matrix
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proteolytic degradation of proteins
m-AAA protease shows overlapping substrate specificity with the i-AAA protease, enzyme degrades domains of substrate proteins exposed to the opposite membrane surface, active site contains the conserved motif HEXXH, a helical region is located at the extreme C-terminus of the subunit
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proteolytic degradation of proteins
mechanism, m-AAA protease shows overlapping substrate specificity with the i-AAA protease, intermolecular catalytic role of SRH domain at the C-terminus of the AAA domain, m-AAA protease shows overlapping substrate specificity with the i-AAA protease, enzyme degrades domains of substrate proteins exposed to the opposite membrane surface, active site contains the conserved motif HEXXH, a helical region is located at the extreme C-terminus of the subunit
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proteolytic degradation of proteins
overlapping substrate specificity with i-AAA protease EC 3.4.24.B19, mechanism, reaction involves an active extraction of transmembrane segments and transport of solvent-exposed domains across the membrane, inner membrane proteins, active site at the opposite membrane surface
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protein + H2O
peptides
-
-
?
apocytochrome P450scc + H2O
?
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bovine protein substrate from adrenal cortex mitochondrial inner membrane, imported in vitro into isolated yeast mitochondrial membrane, due to an N-terminal fusion to a heterologous transmembrane region
-
?
Ccp1 precursor + H2O
?
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i.e. cytochrome c peroxidase, natural substrate
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-
?
cytochrome c peroxidase + H2O
?
cytochrome c peroxidase 1 + H2O
?
hybrid protein + H2O
2 peptide fragments f2 and f3
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hybrid protein of subunit 2 of cytochrome oxidase residues 1-74, mouse dihydrofolate reductase, and mitochondrial presequence, residues 1-66, of subunit 9 of the ATPase of Neurospora crassa, in vitro import into the mitochondrion
product characterization
?
mitochondrial integral inner membrane protein Mgm1 + H2O
?
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-
-
-
?
mitochondrial integral inner membrane protein Yme2p + H2O
?
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wild-type and chimeric mutant containing the dihydrofolate reductase loosely folded mutant, not the one containing the wild-type dihydrofolate reductase, overview, unfolding of the substrate at one side of the membrane might be sufficient for proteolysis, in vitro synthesized protein substrate, imported into the mitochondria, spans the membrane once and exposes large domains at both membrane surfaces
-
?
protein Atp7 + H2O
?
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subunit of F1Fo-ATP synthase, peripheral membrane protein
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-
?
protein Cob + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox1 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox3 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 6 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 8 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 9 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
residues 1-74 of subunit 2 of cytochrome oxidase + H2O
?
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two-step procedure, in vitro import into the mitochondrion
-
?
additional information
?
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cytochrome c peroxidase + H2O
?
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-
-
-
?
cytochrome c peroxidase + H2O
?
-
the m-AAA protease is enriched in the inner boundary membrane of mitochondria. The membrane-anchored precursor form of cytochrome c peroxidase (pCcp1) is preferentially localized in this subdomain of the inner membrane. On processing by the m-AAA protease and rhomboid protease Pcp1, the mature Ccp1 is released and moves into the cristae space
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-
?
cytochrome c peroxidase 1 + H2O
?
-
mediates the ATP-dependent membrane dislocation of cytochrome c peroxidase 1 independent of its proteolytic activity, it thereby ensures the correct positioning of cytochrome c peroxidase 1 within the membrane bilayer allowing intramembrane cleavage by rhomboid
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-
?
cytochrome c peroxidase 1 + H2O
?
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cleaved at Ala29 in the middle of the hydrophobic segment by the inner membrane m-AAA protease complex
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-
?
MrpL32 + H2O
?
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-
-
-
?
MrpL32 + H2O
?
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mitochondrial ribosomal protein, enzyme mediates processing of newly imported MrpL32. Maturation in vivo depends on enzyme
-
-
?
MrpL32 + H2O
?
-
mitochondrial ribosomal protein, enzyme mediates processing of newly imported MrpL32
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-
?
MrpL32 + H2O
?
-
in vivo substrate, m-AAA does not affect the stability of the protein but cleaves the N-terminal mitochondrial targeting sequence upon protein import into the mitochondrion
-
-
?
MrpL32 + H2O
?
-
m-AAA protease initiates proteolysis from the N-terminus of MrpL32. Oxidative stress impairs folding of MrpL32, resulting in its degradation by the m-AAA protease
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-
?
MrpL32 + H2O
?
-
MrpL32 receives processing by the m-AAA protease after import into the matrix
-
-
?
protein + H2O
peptides
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-
-
?
protein + H2O
peptides
-
-
-
?
protein + H2O
peptides
-
activity depends on oligomerisation
-
?
protein + H2O
peptides
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
product peptides in the matrix space are actively transported across the inner membrane by an ABC transporter Mdl1
?
protein + H2O
peptides
-
degradation of proteins exposing loops or domain at either sides of the mitochondrial inner membrane
-
?
protein + H2O
peptides
-
enzyme probably forms a pore-like structure facilitating the transport of hydrophilic parts of the substrate protein during its extraction, limited substrate recognition
product peptides in the matrix space are actively transported across the inner membrane by an ABC transporter Mdl1
?
protein + H2O
peptides
-
degradation of mislocalized proteins in the mitochodria
-
?
protein + H2O
peptides
-
enzyme is essential for cell viability, the enzyme affects the splicing of transcripts of mitochondrial genes encoding essential respiratory complexes and the ATP synthase, degradation of membrane proteins, essentially required as a membrane-integrated quality control, inactivation of AAA proteases cause severe defects in various organisms, including neurodegeneration in humans
-
?
protein + H2O
peptides
-
important role in the removal of non-assembled polypeptides from the inner membrane, inactivation of the enzyme is lethal, loss of activity causes respiration-deficiency, affects the splicing of transcripts of mitochondrial genes encoding essential respiratory chain subunits and controls the post-translational asembly of respiratory complexes and the ATP synthase, required as a membrane-integrated quality control to facilitate protein folding and to ensure the selective removal of non-native polypeptides
-
?
protein + H2O
peptides
-
quality control system to selectively remove non-assembled polypeptides and to prevent their possible deleterious accumulation in the membrane, enzyme is crucial for viability
-
?
additional information
?
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-
construction of several deletion mutants of Yme2p and investigation of their behaviour as substrates, overview, the folded intermembrane space domain of Yme2p prevents proteolysis but not protease binding at the opposite membrane side
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?
additional information
?
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Yta12p enzyme requires YTA10-12 complex formation for activity
-
?
additional information
?
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m-AAA protease ensures maturation of cytochrome c peroxidase 1 (Ccp1). The precursor of Ccp1 is dislocated from the inner mitochondrial membrane to allow cleavage by the rhomboid protease Pcp1. Dislocation depends on the ATPase but not the proteolytic activity of the m-AAA protease
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-
?
additional information
?
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Mgm1 is not a substrate of the enzyme
-
-
?
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
protein + H2O
peptides
-
-
?
Ccp1 precursor + H2O
?
-
i.e. cytochrome c peroxidase, natural substrate
-
-
?
cytochrome c peroxidase + H2O
?
-
the m-AAA protease is enriched in the inner boundary membrane of mitochondria. The membrane-anchored precursor form of cytochrome c peroxidase (pCcp1) is preferentially localized in this subdomain of the inner membrane. On processing by the m-AAA protease and rhomboid protease Pcp1, the mature Ccp1 is released and moves into the cristae space
-
-
?
cytochrome c peroxidase 1 + H2O
?
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cleaved at Ala29 in the middle of the hydrophobic segment by the inner membrane m-AAA protease complex
-
-
?
protein Atp7 + H2O
?
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subunit of F1Fo-ATP synthase, peripheral membrane protein
-
-
?
protein Cob + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox1 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox3 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 6 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 8 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 9 + H2O
?
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degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
additional information
?
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MrpL32 + H2O
?
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-
-
-
?
MrpL32 + H2O
?
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mitochondrial ribosomal protein, enzyme mediates processing of newly imported MrpL32. Maturation in vivo depends on enzyme
-
-
?
MrpL32 + H2O
?
-
in vivo substrate, m-AAA does not affect the stability of the protein but cleaves the N-terminal mitochondrial targeting sequence upon protein import into the mitochondrion
-
-
?
MrpL32 + H2O
?
-
m-AAA protease initiates proteolysis from the N-terminus of MrpL32. Oxidative stress impairs folding of MrpL32, resulting in its degradation by the m-AAA protease
-
-
?
MrpL32 + H2O
?
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MrpL32 receives processing by the m-AAA protease after import into the matrix
-
-
?
protein + H2O
peptides
-
-
-
?
protein + H2O
peptides
-
degradation of proteins exposing loops or domain at either sides of the mitochondrial inner membrane
-
?
protein + H2O
peptides
-
degradation of mislocalized proteins in the mitochodria
-
?
protein + H2O
peptides
-
enzyme is essential for cell viability, the enzyme affects the splicing of transcripts of mitochondrial genes encoding essential respiratory complexes and the ATP synthase, degradation of membrane proteins, essentially required as a membrane-integrated quality control, inactivation of AAA proteases cause severe defects in various organisms, including neurodegeneration in humans
-
?
protein + H2O
peptides
-
important role in the removal of non-assembled polypeptides from the inner membrane, inactivation of the enzyme is lethal, loss of activity causes respiration-deficiency, affects the splicing of transcripts of mitochondrial genes encoding essential respiratory chain subunits and controls the post-translational asembly of respiratory complexes and the ATP synthase, required as a membrane-integrated quality control to facilitate protein folding and to ensure the selective removal of non-native polypeptides
-
?
protein + H2O
peptides
-
quality control system to selectively remove non-assembled polypeptides and to prevent their possible deleterious accumulation in the membrane, enzyme is crucial for viability
-
?
additional information
?
-
-
m-AAA protease ensures maturation of cytochrome c peroxidase 1 (Ccp1). The precursor of Ccp1 is dislocated from the inner mitochondrial membrane to allow cleavage by the rhomboid protease Pcp1. Dislocation depends on the ATPase but not the proteolytic activity of the m-AAA protease
-
-
?
additional information
?
-
-
Mgm1 is not a substrate of the enzyme
-
-
?
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Boeckmann, B.; Bairoch, A.; Apweiler, R.; Blatter, M.C.; Estreicher, A.; Gasteiger, E.; Martin M.J.; Michoud, K.; O'Donovan, C.; Phan, I.; Pilbout, S.; Schneider, M.
The SWISS-PROT protein knowledgebase and its supplement TrEMBL
Nucleic Acids Res.
31
365-370
2003
Saccharomyces cerevisiae (P40341)
brenda
Langer, T.; Kaser, M.; Klanner, C.; Leonhard, K.
AAA proteases of mitochondria: quality control of membrane proteins and regulatory functions during mitochondrial biogenesis
Biochem. Soc. Trans.
29
431-436
2001
eukaryota, Saccharomyces cerevisiae
brenda
Arnold, I.; Langer, T.
Membrane protein degradation by AAA proteases in mitochondria
Biochim. Biophys. Acta
1592
89-96
2002
Saccharomyces cerevisiae
brenda
Leonhard, K.; Herrmann, J.M.; Stuart, R.A.; Mannhaupt, G.; Neupert, W.; Langer, T.
AAA proteases with catalytic sites on opposite membrane surfaces comprise a proteolytic system for the ATP-dependent degradation of inner membrane proteins in mitochondria
EMBO J.
15
4218-4229
1996
Saccharomyces cerevisiae
brenda
Savel'ev, A.S.; Novikova, L.A.; Kovaleva, I.E.; Luzikov, V.N.; Neupert, W.; Langer, T.
ATP-dependent proteolysis in mitochondria. m-AAA protease and PIM1 protease exert overlapping substrate specificities and cooperate with the mtHsp70 system
J. Biol. Chem.
273
20596-20602
1998
Saccharomyces cerevisiae
brenda
Leonhard, K.; Guiard, B.; Pellecchia, G.; Tzagoloff, A.; Neupert, W.; Langer, T.
Membrane protein degradation by AAA proteases in mitochondria: extraction of substrates from either membrane surface
Mol. Cell
5
629-638
2000
Saccharomyces cerevisiae
brenda
Nolden, M.; Ehses, S.; Koppen, M.; Bernacchia, A.; Rugarli, E.I.; Langer, T.
The m-AAA protease defective in hereditary spastic paraplegia controls ribosome assembly in mitochondria
Cell
123
277-289
2005
Saccharomyces cerevisiae, Mus musculus
brenda
Korbel, D.; Wurth, S.; Kaeser, M.; Langer, T.
Membrane protein turnover by the m-AAA protease in mitochondria depends on the transmembrane domains of its subunits
EMBO Rep.
5
698-703
2004
Saccharomyces cerevisiae
brenda
Tatsuta, T.; Augustin, S.; Nolden, M.; Friedrichs, B.; Langer, T.
m-AAA protease-driven membrane dislocation allows intramembrane cleavage by rhomboid in mitochondria
EMBO J.
26
325-335
2007
Saccharomyces cerevisiae
brenda
Rugarli, E.I.; Langer, T.
Translating m-AAA protease function in mitochondria to hereditary spastic paraplegia
Trends Mol. Med.
12
262-269
2006
Saccharomyces cerevisiae, Homo sapiens, Mus musculus
brenda
Suppanz, I.E.; Wurm, C.A.; Wenzel, D.; Jakobs, S.
The m-AAA protease processes cytochrome c peroxidase preferentially at the inner boundary membrane of mitochondria
Mol. Biol. Cell
20
572-580
2009
Saccharomyces cerevisiae
brenda
Gerdes, F.; Tatsuta, T.; Langer, T.
Mitochondrial AAA proteases - Towards a molecular understanding of membrane-bound proteolytic machines
Biochim. Biophys. Acta
1823
49-55
2012
Saccharomyces cerevisiae
brenda
Bonn, F.; Tatsuta, T.; Petrungaro, C.; Riemer, J.; Langer, T.
Presequence-dependent folding ensures MrpL32 processing by the m-AAA protease in mitochondria
EMBO J.
30
2545-2556
2011
Saccharomyces cerevisiae
brenda
Lee, S.; Augustin, S.; Tatsuta, T.; Gerdes, F.; Langer, T.; Tsai, F.T.
Electron cryomicroscopy structure of a membrane-anchored mitochondrial AAA protease
J. Biol. Chem.
286
4404-4411
2011
Saccharomyces cerevisiae
brenda
Botelho, S.C.; Tatsuta, T.; von Heijne, G.; Kim, H.
Dislocation by the m-AAA protease increases the threshold hydrophobicity for retention of transmembrane helices in the inner membrane of yeast mitochondria
J. Biol. Chem.
288
4792-4798
2013
Saccharomyces cerevisiae, Saccharomyces cerevisiae W303-1A
brenda
Lee, S.; Lee, H.; Yoo, S.; Kim, H.
Molecular insights into the m-AAA protease-mediated dislocation of transmembrane helices in the mitochondrial inner membrane
J. Biol. Chem.
292
20058-20066
2017
Saccharomyces cerevisiae, Saccharomyces cerevisiae W303-1A
brenda
Puchades, C.; Rampello, A.; Shin, M.; Giuliano, C.; Wiseman, R.; Glynn, S.; Lander, G.
Atomic structure of the mitochondrial inner membrane AAA+ protease YME1 reveals the mecanism of substrate processing
Science
358
6363
2017
Saccharomyces cerevisiae (B3LL85), Saccharomyces cerevisiae RM11-1a (B3LL85)
brenda