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Information on EC 3.4.24.B18 - m-AAA protease and Organism(s) Saccharomyces cerevisiae and UniProt Accession P40341

for references in articles please use BRENDA:EC3.4.24.B18
preliminary BRENDA-supplied EC number
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EC Tree
     3 Hydrolases
         3.4 Acting on peptide bonds (peptidases)
             3.4.24 Metalloendopeptidases
                3.4.24.B18 m-AAA protease
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This record set is specific for:
Saccharomyces cerevisiae
UNIPROT: P40341
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Word Map
The taxonomic range for the selected organisms is: Saccharomyces cerevisiae
The enzyme appears in selected viruses and cellular organisms
Reaction Schemes
proteolytic degradation of proteins
Synonyms
afg3l2, paraplegin, yme1l, m-aaa protease, afg3l1, aaa protease, yta10, yta12, yta12p, mitochondrial aaa protease, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
mitochondrial respiratory chain complexes assembly protein RCA1
-
TAT-binding homolog 12
-
m-AAA protease
-
-
mitochondrial AAA protease
-
-
Yta10
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
proteolytic degradation of proteins
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of peptide bond
-
hydrolysis of peptide bond
-
-
CAS REGISTRY NUMBER
COMMENTARY hide
213390-44-4
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
protein + H2O
peptides
show the reaction diagram
-
-
?
apocytochrome P450scc + H2O
?
show the reaction diagram
-
bovine protein substrate from adrenal cortex mitochondrial inner membrane, imported in vitro into isolated yeast mitochondrial membrane, due to an N-terminal fusion to a heterologous transmembrane region
-
?
Ccp1 precursor + H2O
?
show the reaction diagram
-
i.e. cytochrome c peroxidase, natural substrate
-
-
?
cytochrome c peroxidase + H2O
?
show the reaction diagram
cytochrome c peroxidase 1 + H2O
?
show the reaction diagram
hybrid protein + H2O
2 peptide fragments f2 and f3
show the reaction diagram
-
hybrid protein of subunit 2 of cytochrome oxidase residues 1-74, mouse dihydrofolate reductase, and mitochondrial presequence, residues 1-66, of subunit 9 of the ATPase of Neurospora crassa, in vitro import into the mitochondrion
product characterization
?
mitochondrial integral inner membrane protein Mgm1 + H2O
?
show the reaction diagram
-
-
-
-
?
mitochondrial integral inner membrane protein Yme2p + H2O
?
show the reaction diagram
-
wild-type and chimeric mutant containing the dihydrofolate reductase loosely folded mutant, not the one containing the wild-type dihydrofolate reductase, overview, unfolding of the substrate at one side of the membrane might be sufficient for proteolysis, in vitro synthesized protein substrate, imported into the mitochondria, spans the membrane once and exposes large domains at both membrane surfaces
-
?
MrpL32 + H2O
?
show the reaction diagram
protein + H2O
peptides
show the reaction diagram
protein Atp7 + H2O
?
show the reaction diagram
-
subunit of F1Fo-ATP synthase, peripheral membrane protein
-
-
?
protein Cob + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox1 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox3 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 6 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 8 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 9 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
residues 1-74 of subunit 2 of cytochrome oxidase + H2O
?
show the reaction diagram
-
two-step procedure, in vitro import into the mitochondrion
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
protein + H2O
peptides
show the reaction diagram
-
-
?
Ccp1 precursor + H2O
?
show the reaction diagram
-
i.e. cytochrome c peroxidase, natural substrate
-
-
?
cytochrome c peroxidase + H2O
?
show the reaction diagram
-
the m-AAA protease is enriched in the inner boundary membrane of mitochondria. The membrane-anchored precursor form of cytochrome c peroxidase (pCcp1) is preferentially localized in this subdomain of the inner membrane. On processing by the m-AAA protease and rhomboid protease Pcp1, the mature Ccp1 is released and moves into the cristae space
-
-
?
cytochrome c peroxidase 1 + H2O
?
show the reaction diagram
-
cleaved at Ala29 in the middle of the hydrophobic segment by the inner membrane m-AAA protease complex
-
-
?
MrpL32 + H2O
?
show the reaction diagram
protein + H2O
peptides
show the reaction diagram
protein Atp7 + H2O
?
show the reaction diagram
-
subunit of F1Fo-ATP synthase, peripheral membrane protein
-
-
?
protein Cob + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox1 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein Cox3 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 6 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 8 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
protein F0 subunit 9 + H2O
?
show the reaction diagram
-
degradation of membrane proteins, essentially required as a membrane-integrated quality control
-
?
additional information
?
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Zn2+
-
dependent on
additional information
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
prohibitin
-
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
no activity at 25°C, unfolding of Yme2p at 37°C triggers its proteolytic breakdown
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
metabolism
-
the m-AAA protease dislocates transmembrane segments from the mitochondrial inner membrane. The presence of the m-AAA protease increases the hydrophobicity required for a transmembrane segment to remain in the membrane. The m-AAA protease is a central component of the mitochondrial protein quality control system, being able to extract and degrade misfolded polypeptides from the inner membrane
physiological function
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
the enzyme is part of a supercomplex in the inner mitochondrial membrane with a native MW of approximately 2000 kDa, assembling with the prohibitin complex
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
-
x * 70000-80000, subunits Yta10 and Yta12 in equimolar amounts
heterooligomer
-
-
oligomer
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
3.4 A cryo-EM structure. The ATPase domains engage substrates through a double spiral staircase of tyrosines. The enzyme contains three co-existing nucleotide states, and the spiral staircase organization links nucleotide state to pore loop conformation. A hinge-like glycine linker accommodates ATPase rearrangements above a flat protease ring
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D634A
-
catalytically inactive
D689A
-
catalytically inactive
E388Q/E448Q
-
an ATP hydrolysis-deficient m-AAA protease variant. The mutant effectively traps ATP and keeps m-AAA protease subunits in one nucleotide conformation
E559Q
E559Q/E614Q
-
inactive
E614Q
additional information
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
metal chelating chromatography
-
Ni-NTA agarose column chromatography and Superose 6 gel filtration
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Boeckmann, B.; Bairoch, A.; Apweiler, R.; Blatter, M.C.; Estreicher, A.; Gasteiger, E.; Martin M.J.; Michoud, K.; O'Donovan, C.; Phan, I.; Pilbout, S.; Schneider, M.
The SWISS-PROT protein knowledgebase and its supplement TrEMBL
Nucleic Acids Res.
31
365-370
2003
Saccharomyces cerevisiae (P40341)
Manually annotated by BRENDA team
Langer, T.; Kaser, M.; Klanner, C.; Leonhard, K.
AAA proteases of mitochondria: quality control of membrane proteins and regulatory functions during mitochondrial biogenesis
Biochem. Soc. Trans.
29
431-436
2001
eukaryota, Saccharomyces cerevisiae
Manually annotated by BRENDA team
Arnold, I.; Langer, T.
Membrane protein degradation by AAA proteases in mitochondria
Biochim. Biophys. Acta
1592
89-96
2002
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Leonhard, K.; Herrmann, J.M.; Stuart, R.A.; Mannhaupt, G.; Neupert, W.; Langer, T.
AAA proteases with catalytic sites on opposite membrane surfaces comprise a proteolytic system for the ATP-dependent degradation of inner membrane proteins in mitochondria
EMBO J.
15
4218-4229
1996
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Savel'ev, A.S.; Novikova, L.A.; Kovaleva, I.E.; Luzikov, V.N.; Neupert, W.; Langer, T.
ATP-dependent proteolysis in mitochondria. m-AAA protease and PIM1 protease exert overlapping substrate specificities and cooperate with the mtHsp70 system
J. Biol. Chem.
273
20596-20602
1998
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Leonhard, K.; Guiard, B.; Pellecchia, G.; Tzagoloff, A.; Neupert, W.; Langer, T.
Membrane protein degradation by AAA proteases in mitochondria: extraction of substrates from either membrane surface
Mol. Cell
5
629-638
2000
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Nolden, M.; Ehses, S.; Koppen, M.; Bernacchia, A.; Rugarli, E.I.; Langer, T.
The m-AAA protease defective in hereditary spastic paraplegia controls ribosome assembly in mitochondria
Cell
123
277-289
2005
Saccharomyces cerevisiae, Mus musculus
Manually annotated by BRENDA team
Korbel, D.; Wurth, S.; Kaeser, M.; Langer, T.
Membrane protein turnover by the m-AAA protease in mitochondria depends on the transmembrane domains of its subunits
EMBO Rep.
5
698-703
2004
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Tatsuta, T.; Augustin, S.; Nolden, M.; Friedrichs, B.; Langer, T.
m-AAA protease-driven membrane dislocation allows intramembrane cleavage by rhomboid in mitochondria
EMBO J.
26
325-335
2007
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Rugarli, E.I.; Langer, T.
Translating m-AAA protease function in mitochondria to hereditary spastic paraplegia
Trends Mol. Med.
12
262-269
2006
Saccharomyces cerevisiae, Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Suppanz, I.E.; Wurm, C.A.; Wenzel, D.; Jakobs, S.
The m-AAA protease processes cytochrome c peroxidase preferentially at the inner boundary membrane of mitochondria
Mol. Biol. Cell
20
572-580
2009
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Gerdes, F.; Tatsuta, T.; Langer, T.
Mitochondrial AAA proteases - Towards a molecular understanding of membrane-bound proteolytic machines
Biochim. Biophys. Acta
1823
49-55
2012
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Bonn, F.; Tatsuta, T.; Petrungaro, C.; Riemer, J.; Langer, T.
Presequence-dependent folding ensures MrpL32 processing by the m-AAA protease in mitochondria
EMBO J.
30
2545-2556
2011
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Lee, S.; Augustin, S.; Tatsuta, T.; Gerdes, F.; Langer, T.; Tsai, F.T.
Electron cryomicroscopy structure of a membrane-anchored mitochondrial AAA protease
J. Biol. Chem.
286
4404-4411
2011
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Botelho, S.C.; Tatsuta, T.; von Heijne, G.; Kim, H.
Dislocation by the m-AAA protease increases the threshold hydrophobicity for retention of transmembrane helices in the inner membrane of yeast mitochondria
J. Biol. Chem.
288
4792-4798
2013
Saccharomyces cerevisiae, Saccharomyces cerevisiae W303-1A
Manually annotated by BRENDA team
Lee, S.; Lee, H.; Yoo, S.; Kim, H.
Molecular insights into the m-AAA protease-mediated dislocation of transmembrane helices in the mitochondrial inner membrane
J. Biol. Chem.
292
20058-20066
2017
Saccharomyces cerevisiae, Saccharomyces cerevisiae W303-1A
Manually annotated by BRENDA team
Puchades, C.; Rampello, A.; Shin, M.; Giuliano, C.; Wiseman, R.; Glynn, S.; Lander, G.
Atomic structure of the mitochondrial inner membrane AAA+ protease YME1 reveals the mecanism of substrate processing
Science
358
6363
2017
Saccharomyces cerevisiae (B3LL85), Saccharomyces cerevisiae RM11-1a (B3LL85)
Manually annotated by BRENDA team