Reference on EC 3.2.1.81 - beta-agarase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Belas, R.; Bartlett, D.; Silverman, M.
Cloning and gene replacement mutagenesis of a Pseudomonas atlantica agarase gene
Appl. Environ. Microbiol.
54
30-37
1988
Pseudoalteromonas atlantica
Buttner, M.J.; Fearnley, I.M.; Bibb, M.J.
The agarase gene (dagA) od Streptomyces coelicolor A3(2): nucleotide sequence and transcriptional analysis
Mol. Gen. Genet.
209
101-109
1987
Streptomyces coelicolor
Bibb, M.J.; Jone, G.H.; Joseph, R.; Buttner, M.J.; Ward, J.M.
The agarase gene (dagA) of Streptomyces coelicolor A3(2): affinity purification and characterization of the cloned gene product
J. Gen. Microbiol.
133
2089-2096
1987
Streptomyces coelicolor
Fukasawa, S.; Kobayashi, H.
Properties of the agarase from a luminous bacterium, Vibrio harveyi
Agric. Biol. Chem.
51
269-270
1987
Flavobacterium flevense, Pseudomonas sp., Pseudoalteromonas atlantica, Vibrio harveyi, Pseudomonas sp. W7
-
Kendall, K.; Cullum, J.
Cloning and expression of an extracellular-agarase gene from Streptomyces coelicolor A3(2) in Streptomyces lividans 66
Gene
29
315-321
1984
Streptomyces coelicolor
Morrice, L.M.; McLean, M.W.; Long, W.F.; Williamson, F.B.
beta-Agarases I and II from Pseudomonas atlantica, substrate specificities
Eur. J. Biochem.
137
149-154
1983
Pseudoalteromonas atlantica
Morrice, L.M.; McLean, M.W.; Long, W.F.; Williamson, F.B.
beta-Agarases I and II from Pseudomonas atlantica, purifications and some properties
Eur. J. Biochem.
135
553-558
1983
Pseudoalteromonas atlantica
Malmqvist, M.
Purification and characterization of two different agarose-degrading enzymes
Biochim. Biophys. Acta
537
31-43
1978
Cytophaga sp., Pseudomonas-like bacterium
Van der Meulen, H.J.; Harder, W.
Production and characterization of the agarase of Cytophaga flevensis
Antonie van Leeuwenhoek
41
431-447
1975
Flavobacterium flevense
Duckworth, M.; Turvey, J.R.
The specificity of an agarase from a Cytophaga species
Biochem. J.
113
693-696
1969
Cytophaga sp.
Duckworth, M.; Turvey, J.R.
The action of a bacterial agarase on agarose, porphyran and alkali-treated porphyran
Biochem. J.
113
687-692
1969
Cytophaga sp.
Duckworth, M.; Turvey, J.R.
An extracellular agarase from a Cytophaga species
Biochem. J.
113
139-142
1969
Cytophaga sp.
Turvey, J.R.; Christison, J.
The hydrolysis of algal galactans by enzymes from a Cytophaga species
Biochem. J.
105
311-316
1967
Cytophaga sp.
Ha, J.C.; Kim, G.T.; Kim, S.K.; Oh, J.H.; Kong, I.S.
beta-Agarase from Pseudomonas sp. W7: purification and recombinant enzyme from Escherichia coli and the effects of salt on its activity
Biotechnol. Appl. Biochem.
26
1-6
1997
Pseudomonas sp., Pseudoalteromonas atlantica, Vibrio sp.
-
Sugano, Y.; Terada, I.; Arita, M.; Noma, M.; Matsumoto, T.
Purification and characterization of a new agarase from a marine bacterium, Vibrio sp. strain JT0107
Appl. Environ. Microbiol.
59
1549-1554
1993
Pseudoalteromonas atlantica, Streptomyces coelicolor, Vibrio sp.
Vera, J.; Alvarez, R.; Murano, E.; Slebe, J.C.; Leon, O.
Identification of a marine agrolytic Pseudoalteromonas isolate and characterization of its extracellular agarase
Appl. Environ. Microbiol.
64
4378-4383
1998
Pseudoalteromonas antarctica
Parro, V.; Vives, C.; Godia, F.; Mellado, R.P.
Overproduction and purification of an agarase of bacterial origin
J. Biotechnol.
58
59-66
1997
Streptomyces coelicolor
Leon, O.; Quintana, L.; Peruzzo, P.; Slebe, J.C.
Purification and properties of an extracellular agarase from Alteromonas sp. strain C-1
Appl. Environ. Microbiol.
58
4060-4063
1992
Alteromonas sp.
Sugano, Y.; Nagae, H.; Inagaki, K.; Yamamoto, T.; Terada, I.; Yamazaki, Y.
Production and characteristics of some new beta-agarases from a marine bacterium Vibrio sp. strain JT0107
J. Ferment. Bioeng.
6
549-554
1995
Vibrio sp.
-
Kirimura, K.; Masuda, N.; Iwasaki,Y.; Nakagawa, H.; Kobayashi, R.; Usami, S.
Purification and characterization of a novel beta-agarase from an alkalophilic bacterium, Alteromonas sp. E-1
J. Biosci.
87
436-441
1999
Alteromonas sp., Alteromonas sp. E-1
Ohta, Y.; Hatada, Y.; Nogi, Y.; Miyazaki, M.; Li, Z.; Akita, M.; Hidaka, Y.; Goda, S.; Ito, S.; Horikoshi, K.
Enzymatic properties and nucleotide and amino acid sequences of a thermostable beta-agarase from a novel species of deep-sea Microbulbifer
Appl. Microbiol. Biotechnol.
64
505-514
2004
Microbulbifer sp., Microbulbifer sp. JAMB-A94
Whitehead, L.A.; Stosz, S.K.; Weiner, R.M.
Characterization of the agarase system of a multiple carbohydrate degrading marine bacterium
Cytobios
106 Suppl 1
99-117
2001
Saccharophagus degradans, Saccharophagus degradans 2-40 / ATCC 43961
Allouch, J.; Jam, M.; Helbert, W.; Barbeyron, T.; Kloareg, B.; Henrissat, B.; Czjzek, M.
The three-dimensional structures of two beta-agarases
J. Biol. Chem.
278
47171-47180
2003
Zobellia galactanivorans (G0L322), Zobellia galactanivorans (Q9RGX8), Zobellia galactanivorans
Suzuki, H.; Sawai, Y.; Suzuki, T.; Kawai, K.
Purification and characterization of an extracellular beta-agarase from Bacillus sp. MK03
J. Biosci. Bioeng.
95
328-334
2003
Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) MK03
Yoon, S.C.; Lee, J.H.; Ahn, S.H.; Lee, E.M.; Park, E.M.; Kong, I.S.
Purification and comparison of properties of the C-terminus truncated agarase of Pseudomonas sp. W7
J. Microbiol. Biotechnol.
13
767-772
2003
Pseudomonas sp., Pseudomonas sp. W7
-
Allouch, J.; Helbert, W.; Henrissat, B.; Czjzek, M.
Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double-helical agarose. [Erratum to document cited in CA141:067260]
Structure
12
905
2004
Zobellia galactanivorans
-
Wang, J.; Mou, H.; Jiang, X.; Guan, H.
Characterization of a novel beta-agarase from marine Alteromonas sp. SY37-12 and its degrading products
Appl. Microbiol. Biotechnol.
71
833-839
2005
Alteromonas sp., Alteromonas sp. SY37-12
Jam, M.; Flament, D.; Allouch, J.; Potin, P.; Thion, L.; Kloareg, B.; Czjzek, M.; Helbert, W.; Michel, G.; Barbeyron, T.
The endo-beta-agarases AgaA and AgaB from the marine bacterium Zobellia galactanivorans: two paralogue enzymes with different molecular organizations and catalytic behaviours
Biochem. J.
385
703-713
2005
Zobellia galactanivorans
Ohta, Y.; Nogi, Y.; Miyazaki, M.; Li, Z.; Hatada, Y.; Ito, S.; Horikoshi, K.
Enzymatic properties and nucleotide and amino acid sequences of a thermostable beta-agarase from the novel marine isolate, JAMB-A94
Biosci. Biotechnol. Biochem.
68
1073-1081
2004
Microbulbifer sp., Microbulbifer sp. JAMB-A94
Ohta, Y.; Hatada, Y.; Ito, S.; Horikoshi, K.
High-level expression of a neoagarobiose-producing beta-agarase gene from Agarivorans sp. JAMB-A11 in Bacillus subtilis and enzymic properties of the recombinant enzyme
Biotechnol. Appl. Biochem.
41
183-191
2005
Agarivorans sp., Agarivorans sp. JAMB-A11
Ohta, Y.; Hatada, Y.; Nogi, Y.; Li, Z.; Zhang, H.; Ito, S.; Horikoshi, K.
Thermostable beta-agarase from a deep-sea Microbulbifer isolate
J. Appl. Glycosci.
51
203-210
2004
Microbulbifer sp., Microbulbifer sp. JAMB-A94
-
Allouch, J.; Helbert, W.; Henrissat, B.; Czjzek, M.
Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double-helical agarose
Structure
12
623-632
2004
Zobellia galactanivorans (G0L322), Zobellia galactanivorans, Zobellia galactanivorans Dsij (G0L322)
Dong, J.; Hashikawa, S.; Konishi, T.; Tamaru, Y.; Araki, T.
Cloning of the novel gene encoding beta-agarase C from a marine bacterium, Vibrio sp. strain PO-303, and characterization of the gene product
Appl. Environ. Microbiol.
72
6399-6401
2006
Vibrio sp. (Q0KKW9), Vibrio sp.
Zhang, W.W.; Sun, L.
Cloning, characterization, and molecular application of a beta-agarase gene from Vibrio sp. strain V134
Appl. Environ. Microbiol.
73
2825-2831
2007
Vibrio sp., Vibrio sp. V143
Dong, J.; Tamaru, Y.; Araki, T.
A unique beta-agarase, AgaA, from a marine bacterium, Vibrio sp. strain PO-303
Appl. Microbiol. Biotechnol.
74
1248-1255
2007
Vibrio sp. (Q0KKW9)
Fu, X.T.; Lin, H.; Kim, S.M.
Purification and characterization of a novel beta-agarase, AgaA34, from Agarivorans albus YKW-34
Appl. Microbiol. Biotechnol.
78
265-273
2008
Agarivorans albus, Agarivorans albus YKW-34
Dong, J.; Tamaru, Y.; Araki, T.
Molecular cloning, expression, and characterization of a beta-agarase gene, agaD, from a marine bacterium, Vibrio sp. strain PO-303
Biosci. Biotechnol. Biochem.
71
38-46
2007
Vibrio sp.
Lee, D.G.; Park, G.T.; Kim, N.Y.; Lee, E.J.; Jang, M.K.; Shin, Y.G.; Park, G.S.; Kim, T.M.; Lee, J.H.; Lee, J.H.; Kim, S.J.; Lee, S.H.
Cloning, expression, and characterization of a glycoside hydrolase family 50 beta-agarase from a marine Agarivorans isolate
Biotechnol. Lett.
28
1925-1932
2006
Agarivorans sp., Agarivorans sp. JA-1
Lee, D.G.; Jang, M.K.; Lee, O.H.; Kim, N.Y.; Ju, S.A.; Lee, S.H.
Over-production of a glycoside hydrolase family 50 beta-agarase from Agarivorans sp. JA-1 in Bacillus subtilis and the whitening effect of its product
Biotechnol. Lett.
30
911-918
2008
Agarivorans sp., Agarivorans sp. JA-1
Li, J.; Han, F.; Lu, X.; Fu, X.; Ma, C.; Chu, Y.; Yu, W.
A simple method of preparing diverse neoagaro-oligosaccharides with beta-agarase
Carbohydr. Res.
342
1030-1033
2007
Pseudoalteromonas sp. (Q8GB62)
Henshaw, J.; Horne-Bitschy, A.; van Bueren, A.L.; Money, V.A.; Bolam, D.N.; Czjzek, M.; Ekborg, N.A.; Weiner, R.M.; Hutcheson, S.W.; Davies, G.J.; Boraston, A.B.; Gilbert, H.J.
Family 6 carbohydrate binding modules in beta-agarases display exquisite selectivity for the non-reducing termini of agarose chains
J. Biol. Chem.
281
17099-17107
2006
Saccharophagus degradans
Ma, C.; Lu, X.; Shi, C.; Li, J.; Gu, Y.; Ma, Y.; Chu, Y.; Han, F.; Gong, Q.; Yu, W.
Molecular cloning and characterization of a novel beta-agarase, AgaB, from marine Pseudoalteromonas sp. CY24
J. Biol. Chem.
282
3747-3754
2007
Pseudoalteromonas sp. CY24 (A1A3Y9)
Zhang, L.; Lu, X.; Han, F.; Ma, C.; Yu, W.
Purification and refolding of a novel beta-agarase from inclusion body of E. coli
J. Ocean Univ. China
6
80-84
2007
Escherichia coli, Pseudoalteromonas sp. CY24
-
Lakshmikanth, M.; Manohar, S.; Souche, Y.; Lalitha, J.
Extracellular beta-agarase LSL-1 producing neoagarobiose from a newly isolated agar-liquefying soil bacterium, Acinetobacter sp., AG LSL-1
World J. Microbiol. Biotechnol.
22
1087-1094
2006
Acinetobacter sp., Acinetobacter sp. AG LSL-1
-
Shi, C.; Lu, X.; Ma, C.; Ma, Y.; Fu, X.; Yu, W.
Enhancing the thermostability of a novel beta-agarase AgaB through directed evolution
Appl. Biochem. Biotechnol.
151
51-59
2008
Pseudoalteromonas sp. CY24
Dong, J.; Tamaru, Y.; Araki, T.
A unique beta-agarase, AgaA, from a marine bacterium, Vibrio sp. strain PO-303
Appl. Environ. Microbiol.
74
1248-1255
2007
Vibrio sp.
Kazlowski, B.; Pan, C.L.; Ko, Y.T.
Separation and quantification of neoagaro- and agaro-oligosaccharide products generated from agarose digestion by beta-agarase and HCl in liquid chromatography systems
Carbohydr. Res.
343
2443-2450
2008
Pseudoalteromonas atlantica
Hu, Z.; Lin, B.K.; Xu, Y.; Zhong, M.Q.; Liu, G.M.
Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105
J. Appl. Microbiol.
106
181-190
2009
Agarivorans sp. HZ105
Fu, W.; Han, B.; Duan, D.; Liu, W.; Wang, C.
Purification and characterization of agarases from a marine bacterium Vibrio sp. F-6
J. Ind. Microbiol. Biotechnol.
35
915-922
2008
Vibrio sp., Vibrio sp. F-6
Fu, X.T.; Pan, C.H.; Lin, H.; Kim, S.M.
Gene cloning, expression, and characterization of a beta-agarase, AgaB34, from Agarivorans albus YKW-34
J. Microbiol. Biotechnol.
19
257-264
2009
Agarivorans albus (A8W969), Agarivorans albus YKW-34 (A8W969), Agarivorans albus YKW-34
Hehemann, J.H.; Michel, G.; Barbeyron, T.; Czjzek, M.
Expression, purification and preliminary X-ray diffraction analysis of the catalytic module of a beta-agarase from the flavobacterium Zobellia galactanivorans
Acta Crystallogr. Sect. F
66
413-417
2010
Zobellia galactanivorans (Q9RGX8), Zobellia galactanivorans
Kim, H.T.; Lee, S.; Lee, D.; Kim, H.S.; Bang, W.G.; Kim, K.H.; Choi, I.G.
Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40: an exo-type beta-agarase producing neoagarobiose
Appl. Microbiol. Biotechnol.
86
227-234
2010
Saccharophagus degradans, Saccharophagus degradans 2-40 / ATCC 43961
Lu, X.; Chu, Y.; Wu, Q.; Gu, Y.; Han, F.; Yu, W.
Cloning, expression and characterization of a new agarase-encoding gene from marine Pseudoalteromonas sp.
Biotechnol. Lett.
31
1565-1570
2009
Pseudoalteromonas sp. CY24 (Q8GB62)
Jang, M.K.; Lee, S.W.; Lee, D.G.; Kim, N.Y.; Yu, K.H.; Jang, H.J.; Kim, S.; Kim, A.; Lee, S.H.
Enhancement of the thermostability of a recombinant beta-agarase, AgaB, from Zobellia galactanivorans by random mutagenesis
Biotechnol. Lett.
32
943-949
2010
Zobellia galactanivorans, Zobellia galactanivorans KCTC 12921
Oh, C.; Nikapitiya, C.; Lee, Y.; Whang, I.; Kim, S.J.; Kang, D.H.; Lee, J.
Cloning, purification and biochemical characterization of beta agarase from the marine bacterium Pseudoalteromonas sp. AG4
J. Ind. Microbiol. Biotechnol.
37
483-494
2010
Pseudoalteromonas sp. AG4 (D7NPL0)
Long, M.; Yu, Z.; Xu, X.
A novel beta-agarase with high pH stability from marine Agarivorans sp. LQ48
Mar. Biotechnol.
12
62-69
2010
Agarivorans sp. LQ48 (C9WIW7)
Fu, X.T.; Kim, S.M.
Agarase: review of major sources, categories, purification method, enzyme characteristics and applications
Mar. drugs
8
200-218
2010
Alteromonas sp., Flavobacterium flevense, Cytophaga sp., Pseudoalteromonas antarctica, Pseudomonas sp., Pseudomonas sp. (Q9KK55), Vibrio sp., Vibrio sp. (A1E2B6), Agarivorans sp., Agarivorans sp. (A1E2A6), Agarivorans sp. (C9WIW7), Bacillus sp. MK03, Vibrio sp. PO-303 (A5A6R7), Agarivorans albus (A8W969), Zobellia galactanivorans (G0L322), Zobellia galactanivorans (Q9RGX8), Saccharophagus degradans (Q21HB4), Saccharophagus degradans (Q21HC5), Saccharophagus degradans (Q21LJ2), Saccharophagus degradans 2-40 (Q21HB9), Saccharophagus degradans 2-40 (Q21LJ1), Microbulbifer thermotolerans (Q6F4N4), Alteromonas sp. C-1, Pseudoalteromonas antarctica N-1, Pseudomonas sp. SK38, Pseudomonas sp. W7 (Q9KK55), Vibrio sp. JT0107, Agarivorans sp. JA-1 (A1E2A6), Microbulbifer thermotolerans JAMB-A94 (Q6F4N4), Vibrio sp. V134 (A1E2B6), Agarivorans albus YKW-34 (A8W969), Saccharophagus degradans 2-40 / ATCC 43961 (Q21HB4), Saccharophagus degradans 2-40 / ATCC 43961 (Q21HC5), Saccharophagus degradans 2-40 / ATCC 43961 (Q21LJ2), Alteromonas sp. SY37-12
Ren, A.; Xia, Z.X.; Yu, W.; Zhou, J.
Expression, crystallization and preliminary X-ray analysis of an anomeric inverting agarase from Pseudoalteromonas sp. CY24
Acta Crystallogr. Sect. F
66
1635-1639
2010
Pseudoalteromonas sp.
Saraswathi, S.; Vasanthabharathi, V.; Kalaiselvi, V.; Jayalakshmi, S.
Characterization and optimization of agarase from an estuarine Bacillus subtilis
Afr. J. Microbiol. Res.
5
2960-2968
2011
Bacillus subtilis
-
Liao, L.; Xu, X.W.; Jiang, X.W.; Cao, Y.; Yi, N.; Huo, Y.Y.; Wu, Y.H.; Zhu, X.F.; Zhang, X.Q.; Wu, M.
Cloning, expression, and characterization of a new beta-agarase from Vibrio sp. strain CN41
Appl. Environ. Microbiol.
77
7077-7079
2011
Vibrio sp. (G3CHF0), Vibrio sp. CN41 (G3CHF0)
Temuujin, U.; Chi, W.J.; Lee, S.Y.; Chang, Y.K.; Hong, S.K.
Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2): an endo-type beta-agarase producing neoagarotetraose and neoagarohexaose
Appl. Microbiol. Biotechnol.
92
749-759
2011
Streptomyces coelicolor, Streptomyces coelicolor A3(2)
Jonnadula, R.; Ghadi, S.
Purification and characterization of beta-agarase from seaweed decomposing bacterium Microbulbifer sp. strain CMC-5
Biotechnol. Bioprocess Eng.
16
513-519
2011
Microbulbifer sp., Microbulbifer sp. CMC-5 (MTCC 9889)
-
Yang, J.I.; Chen, L.C.; Shih, Y.Y.; Hsieh, C.; Chen, C.Y.; Chen, W.M.; Chen, C.C.
Cloning and characterization of beta-agarase AgaYT from Flammeovirga yaeyamensis strain YT
J. Biosci. Bioeng.
112
225-232
2011
Flammeovirga yaeyamensis (G0ZDR5), Flammeovirga yaeyamensis, Flammeovirga yaeyamensis YT (G0ZDR5)
Rhee, Y.J.; Han, C.R.; Kim, W.C.; Jun, D.Y.; Rhee, I.K.; Kim, Y.H.
Isolation of a novel freshwater agarolytic Cellvibrio sp. KY-YJ-3 and characterization of its extracellular beta-agarase
J. Microbiol. Biotechnol.
20
1378-1385
2010
Cellvibrio sp., Cellvibrio sp. KY-YJ-3
Oh, Y.H.; Jung, C.; Lee, J.
Isolation and characterization of a novel agarase-producing Pseudoalteromonas spp. bacterium from the guts of spiny turban shells
J. Microbiol. Biotechnol.
21
818-821
2011
Pseudoalteromonas sp.
Minegishi, H.; Shimane, Y.; Echigo, A.; Ohta, Y.; Hatada, Y.; Kamekura, M.; Maruyama, T.; Usami, R.
Thermophilic and halophilic beta-agarase from a halophilic archaeon Halococcus sp. 197A
Extremophiles
17
931-939
2013
Halococcus sp., Halococcus sp. 197A
Ariga, O.; Inoue, T.; Kubo, H.; Minami, K.; Nakamura, M.; Iwai, M.; Moriyama, H.; Yanagisawa, M.; Nakasaki, K.
Cloning of agarase gene from non-marine agarolytic bacterium Cellvibrio sp.
J. Microbiol. Biotechnol.
22
1237-1244
2012
Cellvibrio sp. (B3IXL6), Cellvibrio sp., Cellvibrio sp. OA-2007 (B3IXL6)
Lee, D.G.; Jeon, M.J.; Lee, S.H.
Cloning, expression, and characterization of a glycoside hydrolase family 118 beta-agarase from Agarivorans sp. JA-1
J. Microbiol. Biotechnol.
22
1692-1697
2012
Agarivorans sp. (K7WTF8), Agarivorans sp. JA-1 (K7WTF8)
Li, J.; Hu, Q.; Li, Y.; Xu, Y.
Purification and characterization of cold-adapted beta-agarase from an antarctic psychrophilic strain
Braz. J. Microbiol.
46
683-690
2015
Pseudoalteromonas sp. NJ21
Li, R.K.; Chen, Z.; Ying, X.J.; Ng, T.B.; Ye, X.Y.
A novel GH16 beta-agarase isolated from a marine bacterium, Microbulbifer sp. BN3 and its characterization and high-level expression in Pichia pastoris
Int. J. Biol. Macromol.
119
1164-1170
2018
Microbulbifer sp. BN3
An, K.; Shi, X.; Cui, F.; Cheng, J.; Liu, N.; Zhao, X.; Zhang, X.H.
Characterization and overexpression of a glycosyl hydrolase family 16 beta-agarase YM01-1 from marine bacterium Catenovulum agarivorans YM01T
Protein Expr. Purif.
143
1-8
2018
Catenovulum agarivorans (A0A286PT85), Catenovulum agarivorans YM01 (A0A286PT85), Catenovulum agarivorans YM01
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