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Information on EC 3.1.8.1 - aryldialkylphosphatase and Organism(s) Oryctolagus cuniculus and UniProt Accession Q9BGN0

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EC Tree
     3 Hydrolases
         3.1 Acting on ester bonds
             3.1.8 Phosphoric-triester hydrolases
                3.1.8.1 aryldialkylphosphatase
IUBMB Comments
Acts on organophosphorus compounds (such as paraoxon) including esters of phosphonic and phosphinic acids. Inhibited by chelating agents; requires divalent cations for activity. Previously regarded as identical with EC 3.1.1.2 arylesterase.
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This record set is specific for:
Oryctolagus cuniculus
UNIPROT: Q9BGN0
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Word Map
The taxonomic range for the selected organisms is: Oryctolagus cuniculus
The enzyme appears in selected viruses and cellular organisms
Synonyms
pon-1, serum paraoxonase, phosphotriesterase, organophosphorus hydrolase, dfpase, serum paraoxonase 1, pon 1, methyl parathion hydrolase, organophosphate hydrolase, hupon1, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A-esterase
-
-
-
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aryltriphosphatase
-
-
-
-
esterase B1
-
-
-
-
esterase E4
-
-
-
-
esterase, organophosphate
-
-
-
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esterase, paraoxon
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-
-
-
esterase, pirimiphos-methyloxon
-
-
-
-
HuPON1
-
-
-
-
OPA anhydrase
-
-
-
-
OPH
-
-
-
-
organophosphate hydrolase
-
-
-
-
organophosphorus acid anhydrase
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-
-
-
organophosphorus hydrolase
-
-
-
-
paraoxon hydrolase
-
-
-
-
paraoxonase
-
-
-
-
phosphotriesterase
-
-
-
-
pirimiphos-methyloxon esterase
-
-
-
-
PTE
-
-
-
-
serum paraoxonase 1
-
additional information
cf. EC 3.1.1.81
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
an aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of phosphoric triester
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
aryltriphosphate dialkylphosphohydrolase
Acts on organophosphorus compounds (such as paraoxon) including esters of phosphonic and phosphinic acids. Inhibited by chelating agents; requires divalent cations for activity. Previously regarded as identical with EC 3.1.1.2 arylesterase.
CAS REGISTRY NUMBER
COMMENTARY hide
117698-12-1
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
paraoxon + H2O
4-nitrophenol + diethyl phosphate
show the reaction diagram
-
-
-
?
chlorpyrifos-oxon + H2O
?
show the reaction diagram
-
-
-
-
?
diethyl paraoxon + H2O
?
show the reaction diagram
-
-
-
-
?
diethyl-paraoxon + H2O
diethyl phosphate + 4-nitrophenol
show the reaction diagram
diisopropyl fluorophosphate + H2O
?
show the reaction diagram
dimethyl paraoxon + H2O
?
show the reaction diagram
-
-
-
-
?
dimethyl-paraoxon + H2O
dimethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
paraoxon + H2O
4-nitrophenol + diethyl phosphate
show the reaction diagram
-
-
-
-
?
paraoxon + H2O
diethylphosphate + 4-nitrophenol
show the reaction diagram
sarin + H2O
?
show the reaction diagram
soman + H2O
?
show the reaction diagram
tabun + H2O
?
show the reaction diagram
-
efficient hydrolysis of tabun (100 nM) is observed with about 0.025-0.04 units of paraoxonase 1. Tabun hydrolysis with paraoxonase 1 is about 30-60times and about 200-260times more efficient than that with sarin and soman, respectively
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
diethyl-paraoxon + H2O
diethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
dimethyl-paraoxon + H2O
dimethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Cd2+
-
Ca2+ is required for catalytic activity and structural stability. Cd2+ or Zn2+ substitute for Ca2+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2-hydroxyquinoline
diethyl-paraoxon
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
HDL
modulation of substrate selectivity and catalytic stimulation by HDL
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.3
paraoxon
pH 8.0
0.889
diethyl paraoxon
-
in 20 mM Tris-HCl buffer, pH 7.4, 1 mM CaCl2, temperature not specified in the publication
additional information
additional information
Michaelis-Menten kinetics
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.001
paraoxon
pH 8.0
16.2
diethyl paraoxon
-
in 20 mM Tris-HCl buffer, pH 7.4, 1 mM CaCl2, temperature not specified in the publication
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.8
diethyl paraoxon
-
in 20 mM Tris-HCl buffer, pH 7.4, 1 mM CaCl2, temperature not specified in the publication
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.192 - 4.49
diethyl-paraoxon
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
malfunction
the impact of Y71 mutational substitutions on PON1's lactonase activity is minimal, whereas the kcat for the paraoxonase activity is negatively perturbed by up to 100fold, suggesting greater mutational robustness of the native activity. Additionally, while these substitutions modulate PON1's active site shape, volume, and loop flexibility, their largest effect is in altering the solvent accessibility of the active site by expanding the active site volume, allowing additional water molecules to enter. This effect is markedly more pronounced in the organophosphatase activity than the lactonase activity
physiological function
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
PON3_RABIT
354
0
39507
Swiss-Prot
Secretory Pathway (Reliability: 1)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
rabbit serum contains two major species of PON monomers (42300 Da and 39800 Da), SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
enzyme PON1 is a six-bladed beta-propeller with a flexible loop (residues 70-81) covering the active site
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
glycoprotein
-
at least 2 N-linked sugar chains, contains sialic acid residues
additional information
-
the deduced rabbit amino acid sequence contains five potential N-glycosylation sites, whereas the human sequence predicts four possible N-glycosylation sites
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D269N
site-directed mutagenesis, the mutant possesses measurable lactonase and paraoxonase activity
D270X
site-directed mutagenesis, mutation of the residue stabilizes the PON1-paraoxon substrate binding reducing the leaving group elimination rate. Effects of Asn270 mutation on enzymatic structure, overview
E53Q
site-directed mutagenesis, the mutant possesses measurable lactonase and paraoxonase activity
H115W/T332S
site-directed mutagenesis, the mutant shows highly increased activity with diethyl-paraoxon compared to wild-type
H115W/T332S/V346A
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
H115W/V346A
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
I74A
site-directed mutagenesis, the mutant shows highly reduced activity with diethyl-paraoxon compared to wild-type
I74F
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
I74F/H115W
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
I74F/H115W/T332S
site-directed mutagenesis, the mutant shows very highly increased activity with diethyl-paraoxon compared to wild-type
I74F/H115W/V346A
site-directed mutagenesis, the mutant shows highly increased activity with diethyl-paraoxon compared to wild-type
I74F/T332S
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
I74F/T332S/V346A
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
I74F/V346A
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
I74L
site-directed mutagenesis, the mutant shows unaltered activity with diethyl-paraoxon compared to wild-type
I74V
site-directed mutagenesis, the mutant shows slightly reduced activity with diethyl-paraoxon compared to wild-type
I74W
site-directed mutagenesis, the mutant shows unaltered activity with diethyl-paraoxon compared to wild-type
L69A
site-directed mutagenesis, the mutant shows highly reduced activity with diethyl-paraoxon compared to wild-type
L69I
site-directed mutagenesis, the mutant shows slightly increased activity with diethyl-paraoxon compared to wild-type
T332A
site-directed mutagenesis, the mutant shows highly increased activity with diethyl-paraoxon compared to wild-type
T332S
site-directed mutagenesis, the mutant shows highly increased activity with diethyl-paraoxon compared to wild-type
T332S/V346A
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
T332V
site-directed mutagenesis, almost inactive mutant
V346A
site-directed mutagenesis, the mutant shows increased activity with diethyl-paraoxon compared to wild-type
V346L
Y71A
site-directed mutagenesis, the mutant shows an increased active site volume compared to the wild-type
Y71F
site-directed mutagenesis, the mutant shows an increased active site volume compared to the wild-type
Y71G
site-directed mutagenesis, the mutant shows reduced lactonase and paraoxonase activities compared to the wild-type enzyme, the mutant shows an increased active site volume compared to the wild-type
Y71M
site-directed mutagenesis, the mutant shows reduced lactonase and paraoxonase activities compared to the wild-type enzyme, the mutant shows an increased active site volume compared to the wild-type
Y71W
site-directed mutagenesis, the mutant shows an increased active site volume compared to the wild-type
Y71X
site-saturation library screening. The impact of Y71 mutational substitutions on PON1's lactonase activity is minimal, whereas the kcat for the paraoxonase activity is negatively perturbed by up to 100fold, suggesting greater mutational robustness of the native activity. Additionally, while these substitutions modulate PON1's active site shape, volume, and loop flexibility, their largest effect is in altering the solvent accessibility of the active site by expanding the active site volume, allowing additional water molecules to enter. This effect is markedly more pronounced in the organophosphatase activity than the lactonase activity. Differential effect of mutating Y71 on the native and promiscuous activities of PON1, detailed overview
additional information
modulating the active site hydrophobicity is a key element in facilitating the evolution of organophosphatase activity. Molecular dynamics simulations of wild-type and mutant PON1 enzymes, detailed overview
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
Cibacron Blue 3GA-agarose column chromatography, DEAE-Sepharose column chromatography, gel filtration, and Sepharose CL-6B column chromatography
-
DEAE-Sepharose column chromatography, Concanavalin A-Sepharose column chromatography, and Sepharose CL-6B gel filtration
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
gene PON1, phylogenetic analysis
gene PON1, recombinant expression of wild-type and mutant enzymes in Escherichia coli strain Origami B (DE3)
RENATURED/Commentary
ORGANISM
UNIPROT
LITERATURE
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Furlong, C.E.; Richter, R.J.; Chapline, C.; Crabb, J.W.
Purification of rabbit and human serum paraoxonase
Biochemistry
30
10133-10140
1991
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Hassett, C.; Richter, R.J.; Humbert, R.; Chapline, C.; Crabb, J.W.; Omiecinski, C.J.; Furlong, C.E.
Characterization of cDNA clones encoding rabbit and human serum paraoxonase: the mature protein retains its signal sequence
Biochemistry
30
10141-10149
1991
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Kuo, C.L.; La Du, B.N.
Comparison of purified human and rabbit serum paraoxonases
Drug Metab. Dispos.
23
935-944
1995
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Kuo, C.L.; La Du, B.N.
Calcium binding by human and rabbit serum paraoxonases. Structural stability and enzymic activity
Drug Metab. Dispos.
26
653-660
1998
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Aharoni, A.; Gaidukov, L.; Yagur, S.; Toker, L.; Silman, I.; Tawfik, D.S.
Directed evolution of mammalian paraoxonases PON1 and PON3 for bacterial expression and catalytic specialization
Proc. Natl. Acad. Sci. USA
101
482-487
2004
Homo sapiens (P27169), Homo sapiens (Q15166), Mus musculus (Q62087), Oryctolagus cuniculus (Q9BGN0)
Manually annotated by BRENDA team
Valiyaveettil, M.; Alamneh, Y.; Biggemann, L.; Soojhawon, I.; Doctor, B.P.; Nambiar, M.P.
Efficient hydrolysis of the chemical warfare nerve agent tabun by recombinant and purified human and rabbit serum paraoxonase 1
Biochem. Biophys. Res. Commun.
403
97-102
2010
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Valiyaveettil, M.; Alamneh, Y.; Rezk, P.; Biggemann, L.; Perkins, M.W.; Sciuto, A.M.; Doctor, B.P.; Nambiar, M.P.
Protective efficacy of catalytic bioscavenger, paraoxonase 1 against sarin and soman exposure in guinea pigs
Biochem. Pharmacol.
81
800-809
2011
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Valiyaveettil, M.; Alamneh, Y.; Biggemann, L.; Soojhawon, I.; Farag, H.A.; Agrawal, P.; Doctor, B.P.; Nambiar, M.P.
In vitro efficacy of paraoxonase 1 from multiple sources against various organophosphates
Toxicol. In Vitro
25
905-913
2011
Oryctolagus cuniculus, Homo sapiens
Manually annotated by BRENDA team
Le, Q.A.; Chang, R.; Kim, Y.H.
Rational design of paraoxonase 1 (PON1) for the efficient hydrolysis of organophosphates
Chem. Commun. (Camb.)
51
14536-14539
2015
Oryctolagus cuniculus (P27170)
Manually annotated by BRENDA team
Blaha-Nelson, D.; Krueger, D.M.; Szeler, K.; Ben-David, M.; Kamerlin, S.C.
Active site hydrophobicity and the convergent evolution of paraoxonase activity in structurally divergent enzymes the case of serum paraoxonase 1
J. Am. Chem. Soc.
139
1155-1167
2017
Oryctolagus cuniculus (P27170)
Manually annotated by BRENDA team
Zhang, H.; Yang, L.; Ma, Y.Y.; Zhu, C.; Lin, S.; Liao, R.Z.
Theoretical studies on catalysis mechanisms of serum paraoxonase 1 and phosphotriesterase diisopropyl fluorophosphatase suggest the alteration of substrate preference from paraoxonase to DFP
Molecules
23
1660
2018
Oryctolagus cuniculus (P27170)
Manually annotated by BRENDA team
Zhang, H.; Yang, L.; Ma, Y.Y.; Zhu, C.; Lin, S.; Liao, R.Z.
Theoretical studies on catalysis mechanisms of serum paraoxonase 1 and phosphotriesterase diisopropyl fluorophosphatase suggest the alteration of substrate preference from paraoxonase to DFP
Molecules
23
E1660
2018
Oryctolagus cuniculus (P27170)
Manually annotated by BRENDA team