Acts on organophosphorus compounds (such as paraoxon) including esters of phosphonic and phosphinic acids. Inhibited by chelating agents; requires divalent cations for activity. Previously regarded as identical with EC 3.1.1.2 arylesterase.
an aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol
catalytic reaction mechanism involving residue Asp269, and role of Asp270 for the catalytic function, molecular dynamics and modelling, overview. The reaction is supposed to proceed by a two-step addition-elimination (An + Dn) mechanism, which goes through a common pentavalent intermediate observed in phosphoryl transfer reactions. The first step is the activation of H2O by Asp269 and Glu53 to form a nucleophile hydroxide and a metastable pentavalent complex. Both the residues Asn168 and Asn224 help the leaving group leave through hydrogen bonds
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SYSTEMATIC NAME
IUBMB Comments
aryltriphosphate dialkylphosphohydrolase
Acts on organophosphorus compounds (such as paraoxon) including esters of phosphonic and phosphinic acids. Inhibited by chelating agents; requires divalent cations for activity. Previously regarded as identical with EC 3.1.1.2 arylesterase.
efficient hydrolysis of tabun (100 nM) is observed with about 0.025-0.04 units of paraoxonase 1. Tabun hydrolysis with paraoxonase 1 is about 30-60times and about 200-260times more efficient than that with sarin and soman, respectively
both docking and molecular dynamics simulations suggest that the only way paraoxon can be accommodated in the PON1 active site is by pushing Y71 out of the active site, causing the active site loop to take on a partially open conformation
molecular docking of substrates to wild-type and mutant enzymes using the crystal structure of PON1 (PDB ID 3SRG with resolution 2.19 A), overview. The enzyme also shows arylesterase activity (EC 3.1.1.2) with phenyl acetate as substrate
th enzyme is also active with the chromogenic lactone thiobutyl-gamma-butyric lactone (TBBL), cf. EC 3.1.1.81. It has both lactonase activity and paraoxonase activity. Empirical valence bond simulations of PON1-catalyzed hydrolyses of paraoxon and TBBL, overview
the mammalian serum paraoxonase 1 (PON1) is a calcium-dependent serum esterase which catalyzes the hydrolysis of a broad range of organic esters and organophosphorous (OP) compounds. PON1 is a lactonase with native substrates gamma- and delta-lactones which have long alkyl side chains, and PON1 possesses promiscuous OP hydrolase activity, particularly on paraoxon, which is attributed to its considerable plasticity of catalytic structure
the mammalian serum paraoxonase 1 (PON1) is a calcium-dependent serum esterase which catalyzes the hydrolysis of a broad range of organic esters and organophosphorous (OP) compounds. PON1 is a lactonase with native substrates gamma- and delta-lactones which have long alkyl side chains, and PON1 possesses promiscuous OP hydrolase activity, particularly on paraoxon, which is attributed to its considerable plasticity of catalytic structure
two calcium binding sites, the higher affinity site being essential for hydrolytic activity and its removal is irreversible, the lower affinity site being responsible for catalytic activity with reversible binding of Ca2+
dependent on, PON1 has a six-blade beta-propeller fold with two calcium ions in its central tunnel. The structural Ca2+ is completely embedded inside the protein, and the catalytic Ca2+ is located at the bottom of the active site cavity. PTE Ca2+ binding structure comparisons
the impact of Y71 mutational substitutions on PON1's lactonase activity is minimal, whereas the kcat for the paraoxonase activity is negatively perturbed by up to 100fold, suggesting greater mutational robustness of the native activity. Additionally, while these substitutions modulate PON1's active site shape, volume, and loop flexibility, their largest effect is in altering the solvent accessibility of the active site by expanding the active site volume, allowing additional water molecules to enter. This effect is markedly more pronounced in the organophosphatase activity than the lactonase activity
serum paraoxonase 1 (PON1) is a native lactonase capable of promiscuously hydrolyzing a broad range of substrates, including organophosphates, esters, and carbonates. Comparison of PON1 to other organophosphatases demonstrates that either a similar gating loop or a highly buried solvent excluding active site is a common feature of these enzymes
the phosphotriesterase activity development between PON1, EC 3.1.8.1, and DFPase, EC 3.1.8.2, is investigated by using the hybrid density functional theory method B3LYP. Structure comparisons of evolutionarily related enzymes show that the mutation of Asn270 leads to the catalytic Ca2+ ion indirectly connecting the buried structural Ca2+ ion via hydrogen bonds in DFPase. It can reduce the plasticity of enzymatic structure, and possibly change the substrate preference from paraoxon (preferred substrate of PON1) to DFP (preferred substrate of DFPase), which implies an evolutionary transition from mono- to dinuclear catalytic centers, enzyme catalysis mechanism from an evolutionary perspective, overview
serum paraoxonase 1 (PON1) is a native lactonase capable of promiscuously hydrolyzing a broad range of substrates, including organophosphates, esters, and carbonates. PON1 is a calcium-dependent hydrolytic enzyme that is found in all mammalian species. In vivo, this enzyme forms complexes with the membrane-like surface of high-density lipoprotein (HDL) and contributes to HDL's antioxidant properties. Modulation of substrate selectivity and catalytic stimulation by HDL
the enzyme catalyzes the hydrolysis of organophosphorus (OP) compounds and enhances hydrolysis of various nerve agents. PON1's native function is likely to be a lactonase which hydrolyzes the lactones from the oxidized lipids
enzyme PON1 is a six-bladed beta-propeller with a flexible loop (residues 70-81) covering the active site. This loop contains a functionally critical Tyr at position 71, mutational analysis of the role of Y71 in PON1's lactonase and organophosphatase activities. The side chain of Y71 is highly mobile and has been shown to adopt various conformational substrates that have been suggested to differentially affect PON1's native and promiscuous functions. Residue Y71 does not play an active role in PON1's lactonase activity in general, and specifically not on the HDL-induced simulation. Molecular dynamics simulations of PON1, e.g. using crystal structure of RePON1 in complex with the inhibitor 2-hydroxyquinoline (2HQ) and obtained at pH 6.5 (PDB ID 3SRG). In the wild-type enzyme Y71 forms a hydrogen-bonding interaction with the side chain of D183, which is itself part of a hydrogen-bonding network that leads from N168 on the catalytic Ca2+ ion to the outer periphery of the protein. D183 is central to this hydrogen-bonding network, as in addition to the hydrogen bond it forms with the side chain of Y71, it also forms hydrogen-bonding interactions with the side chains of S166, N168, and H184, the backbone carbonyl group of S166, and an active site water molecule. Therefore, D183 acts as an anchor, keeping this hydrogen-bonding network together. Active site hydrophobicity and the role of the active site loop in determining substrate selectivity, active site structure, structure-function relationship, overview
the serum paraoxonase 1 (PON1) is a calcium-dependent beta-propeller protein. PON1 has a six-blade beta-propeller fold with two calcium ions in its central tunnel. The structural Ca2+ is completely embedded inside the protein, and the catalytic Ca2+ is located at the bottom of the active site cavity. PON1, EC 3.1.8.1, and DFPase, EC 3.1.8.2, seem to employ similar catalytic mechanisms as phosphotriesterase, due to their structural similarities of active sites. The attacking nucleophile for phosphotriester hydrolysis is identified to be an activated water molecule, with the nucleophile attacking the phosphorus center. The E53Q and D269N mutants in PON1 both possess measurable lactonase and paraoxonase activity, and mutation studies combined with related molecular dynamics simulations suggest that the water activated by Glu53 and Asp269 is the most likely attacking nucleophile. Analysis of the rate-determining reaction step of the organophosphorus compound hydrolysis catalyzed both by DFPase and PON1. Structure-function relationship, overview. Active site structure of PON1 (PDB ID 3SRE) and substrate docking
the serum paraoxonase 1 (PON1) is a calcium-dependent beta-propeller protein. PON1 has a six-blade beta-propeller fold with two calcium ions in its central tunnel. The structural Ca2+ is completely embedded inside the protein, and the catalytic Ca2+ is located at the bottom of the active site cavity. PON1, EC 3.1.8.1, and DFPase, EC 3.1.8.2, seem to employ similar catalytic mechanisms as phosphotriesterase, due to their structural similarities of active sites. The attacking nucleophile for phosphotriester hydrolysis is identified to be an activated water molecule, with the nucleophile attacking the phosphorus center. The E53Q and D269N mutants in PON1 both possess measurable lactonase and paraoxonase activity, and mutation studies combined with related molecular dynamics simulations suggest that the water activated by Glu53 and Asp269 is the most likely attacking nucleophile. Analysis of the rate-determining reaction step of the organophosphorus compound hydrolysis catalyzed both by DFPase and PON1. Structure-function relationship, overview. Active site structure of PON1 (PDB ID 3SRE) and substrate docking
the deduced rabbit amino acid sequence contains five potential N-glycosylation sites, whereas the human sequence predicts four possible N-glycosylation sites
site-directed mutagenesis, mutation of the residue stabilizes the PON1-paraoxon substrate binding reducing the leaving group elimination rate. Effects of Asn270 mutation on enzymatic structure, overview
site-directed mutagenesis, the mutant shows reduced lactonase and paraoxonase activities compared to the wild-type enzyme, the mutant shows an increased active site volume compared to the wild-type
site-directed mutagenesis, the mutant shows reduced lactonase and paraoxonase activities compared to the wild-type enzyme, the mutant shows an increased active site volume compared to the wild-type
site-saturation library screening. The impact of Y71 mutational substitutions on PON1's lactonase activity is minimal, whereas the kcat for the paraoxonase activity is negatively perturbed by up to 100fold, suggesting greater mutational robustness of the native activity. Additionally, while these substitutions modulate PON1's active site shape, volume, and loop flexibility, their largest effect is in altering the solvent accessibility of the active site by expanding the active site volume, allowing additional water molecules to enter. This effect is markedly more pronounced in the organophosphatase activity than the lactonase activity. Differential effect of mutating Y71 on the native and promiscuous activities of PON1, detailed overview
modulating the active site hydrophobicity is a key element in facilitating the evolution of organophosphatase activity. Molecular dynamics simulations of wild-type and mutant PON1 enzymes, detailed overview
paraoxonase 1 significantly protects against sarin and soman exposure in guinea pigs and supports the development of paraoxonase 1 as a catalytic bioscavenger for protection against lethal exposure of chemical warfare nerve agents exposure
PON1 shows great promise as a biotherapeutic due to its role in atherosclerosis and because of its ability to hydrolyze a broad range of organophosphates, including pesticides and nerve agents such as sarin, soman, and VX
Theoretical studies on catalysis mechanisms of serum paraoxonase 1 and phosphotriesterase diisopropyl fluorophosphatase suggest the alteration of substrate preference from paraoxonase to DFP
Theoretical studies on catalysis mechanisms of serum paraoxonase 1 and phosphotriesterase diisopropyl fluorophosphatase suggest the alteration of substrate preference from paraoxonase to DFP