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Information on EC 3.1.8.1 - aryldialkylphosphatase and Organism(s) Brevundimonas diminuta and UniProt Accession P0A434

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EC Tree
     3 Hydrolases
         3.1 Acting on ester bonds
             3.1.8 Phosphoric-triester hydrolases
                3.1.8.1 aryldialkylphosphatase
IUBMB Comments
Acts on organophosphorus compounds (such as paraoxon) including esters of phosphonic and phosphinic acids. Inhibited by chelating agents; requires divalent cations for activity. Previously regarded as identical with EC 3.1.1.2 arylesterase.
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Brevundimonas diminuta
UNIPROT: P0A434
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Word Map
The taxonomic range for the selected organisms is: Brevundimonas diminuta
The enzyme appears in selected viruses and cellular organisms
Synonyms
pon-1, serum paraoxonase, phosphotriesterase, organophosphorus hydrolase, dfpase, serum paraoxonase 1, pon 1, methyl parathion hydrolase, organophosphate hydrolase, hupon1, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
OP-hydrolyzing enzyme
-
organophosphate hydrolase
-
organophosphorus hydrolase
-
organophosphorus-hydrolyzing enzyme
-
A-esterase
-
-
-
-
aryltriphosphatase
-
-
-
-
esterase B1
-
-
-
-
esterase E4
-
-
-
-
esterase, organophosphate
-
-
-
-
esterase, paraoxon
-
-
-
-
esterase, pirimiphos-methyloxon
-
-
-
-
HuPON1
-
-
-
-
OPA anhydrase
-
-
-
-
organophosphate hydrolase
organophosphorus acid anhydrase
-
-
-
-
organophosphorus hydrolase
paraoxon hydrolase
-
-
-
-
paraoxonase
-
-
-
-
phosphotriesterase
pirimiphos-methyloxon esterase
-
-
-
-
additional information
cf. EC 3.1.8.2
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
an aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol
show the reaction diagram
an aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of phosphoric triester
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
aryltriphosphate dialkylphosphohydrolase
Acts on organophosphorus compounds (such as paraoxon) including esters of phosphonic and phosphinic acids. Inhibited by chelating agents; requires divalent cations for activity. Previously regarded as identical with EC 3.1.1.2 arylesterase.
CAS REGISTRY NUMBER
COMMENTARY hide
117698-12-1
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
(RS)-propan-2-yl methylphosphonofluoridate + H2O
isopropyl phosphate methylphosphonate + fluoride
show the reaction diagram
i.e. sarin
-
-
?
(S)-[2-(diethylamino)ethyl] O,O-diethyl phosphorothioate + H2O
diethyl phosphate + 2-(diethylamino)ethane-1-thiol
show the reaction diagram
-
-
-
?
(S)-[2-(diethylamino)ethyl] O,O-dimethyl phosphorothioate + H2O
dimethyl phosphate + 2-(diethylamino)ethane-1-thiol
show the reaction diagram
-
-
-
?
(S)-[2-(diethylamino)ethyl] O-(2-methylpropyl) methylphosphonothioate + H2O
2-methylpropyl methylphosphonate + 2-(diethylamino)ethane-1-thiol
show the reaction diagram
-
-
-
?
(S)-[2-[di(propan-2-yl)amino]ethyl] O,O-diethyl phosphorothioate + H2O
diethyl phosphate + 2-[di(propan-2-yl)amino]ethane-1-thiol
show the reaction diagram
-
-
-
?
(S)-[2-[di(propan-2-yl)amino]ethyl] O,O-dimethyl phosphorothioate + H2O
dimethyl phosphate + 2-[di(propan-2-yl)amino]ethane-1-thiol
show the reaction diagram
-
-
-
?
(S)-[2-[di(propan-2-yl)amino]ethyl] O-ethyl methylphosphonothioate + H2O
ethyl methylphosphonate + [di(propan-2-yl)amino]ethane-1-thiol
show the reaction diagram
-
-
-
?
2-methoxycarbonyl-1-methylvinyl dimethyl phosphate + H2O
?
show the reaction diagram
i.e. mevinphos
-
-
?
3-chloro-4-methyl-2-oxo-2H-chromen-7-yl ethyl methylphosphonate + H2O
3-chloro-7-hydroxy-4-methyl-2H-chromen-2-one + ethyl methylphosphonate
show the reaction diagram
-
-
-
?
3-[fluoro(methyl)phosphoryl]oxy-2,2-dimethylbutane + H2O
Pinacolyl methylphosphonate + fluoride
show the reaction diagram
i.e. soman
-
-
?
4-acetylphenyl (R)-2-methylpropyl methylphosphonate + H2O
(R)-2-methylpropyl methylphosphonate + 4-acetylphenol
show the reaction diagram
-
-
-
?
4-acetylphenyl (S)-2-methylpropyl methylphosphonate + H2O
(S)-2-methylpropyl methylphosphonate + 4-acetylphenol
show the reaction diagram
-
-
-
?
coroxon + H2O
diethyl phosphate + chlorferon
show the reaction diagram
cyclohexylmethylphosphonofluoridate + H2O
?
show the reaction diagram
i.e. cyclosarin, activity of 3.1.8.2
-
-
?
cyclohexylmethylphosphonofluoridate + H2O
cyclohexyl methylphosphonate + fluoride
show the reaction diagram
i.e. cyclosarin
-
-
?
demeton-S + H2O
2-ethylsulfanyl-ethanethiol + diethyl phosphate
show the reaction diagram
-
-
-
?
diethyl (3,5,6-trichloropyridin-2-yl) phosphate + H2O
?
show the reaction diagram
i.e. chlorpyrifos-oxon
-
-
?
diethyl 2-(dimethoxyphosphorylsulfanyl)butanedioate + H2O
?
show the reaction diagram
i.e. malaoxon
-
-
?
diethyl 4-chlorophenyl phosphate + H2O
4-chlorophenol + diethyl phosphate
show the reaction diagram
-
-
-
?
diethyl 4-chlorophenyl thiophosphate + H2O
4-chlorophenol + diethyl thiophosphate
show the reaction diagram
-
-
-
?
diethyl 4-methylbenzylphosphonate + H2O
?
show the reaction diagram
-
-
-
?
diethyl 4-nitrophenyl phosphate + H2O
4-nitrophenol + diethyl phosphate
show the reaction diagram
-
-
-
?
diethyl-paraoxon + H2O
diethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
dimethyl-paraoxon + H2O
dimethyl phosphate + 4-nitrophenol
show the reaction diagram
dimethyl-parathion + H2O
dimethyl thiophosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
ethyl dimethylphosphoramidocyanidate + H2O
?
show the reaction diagram
i.e. tabun
-
-
?
N,N-diethyl-2-(methyl-(2-methylpropoxy)phosphoryl)sulfanylethanamine + H2O
?
show the reaction diagram
i.e. VR
-
-
?
O,O-diethyl-S-[2-diethylaminoethyl]thiophosphate + H2O
?
show the reaction diagram
i.e. amiton or VG
-
-
?
O,O-diethyl-S-[2-diisopropylaminoethyl]thiophosphate + H2O
?
show the reaction diagram
i.e. diisopropyl-amiton
-
-
?
O,O-diethyl-S-[2-dimethylaminoethyl]thiophosphate + H2O
?
show the reaction diagram
i.e. dimethyl-amiton
-
-
?
O-ethyl S-(2-diisopropylaminoethyl)methylphosphonothioate + H2O
?
show the reaction diagram
also called VX
-
-
?
O-ethyl-S-(2-di-n-propylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. n-propyl-VX
-
-
?
O-ethyl-S-(2-diethylaminoethyl)ethylphosphonothiolate + H2O
?
show the reaction diagram
i.e. VE
-
-
?
O-ethyl-S-(2-diethylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. VM
-
-
?
O-ethyl-S-(2-diisopropylaminoethyl)ethylphosphonothiolate + H2O
?
show the reaction diagram
i.e. isopropyl-VE
-
-
?
O-ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. VX
-
-
?
O-ethyl-S-(2-dimethylaminoethyl)ethylphosphonothiolate + H2O
?
show the reaction diagram
i.e. methyl-VE
-
-
?
O-ethyl-S-(2-dimethylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. dimethyl-VX
-
-
?
O-isobutyl S-(2-N,N-diethylaminoethyl)methylphosphonothioate + H2O
?
show the reaction diagram
also called VR
-
-
?
O-isobutyl-S-(2-diethylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. VR or Russian VX
-
-
?
O-methyl-S-(2-diethylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. methyl-VM
-
-
?
O-n-butyl-S-(2-diethylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. CVX or Chinese VX
-
-
?
paraoxon + H2O
4-nitrophenol + di-ethyl phosphate
show the reaction diagram
-
-
-
?
paraoxon + H2O
4-nitrophenol + diethyl phosphate
show the reaction diagram
paraoxon + H2O
diethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
paraoxon + H2O
diethylphosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
parathion + H2O
4-nitrophenol + diethyl thiophosphate
show the reaction diagram
-
-
-
?
parathion + H2O
diethyl thiophosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
1,2,2-trimethylpropyl methylphosphonofluoridate + H2O
3,3-dimethylbutan-2-yl methylphosphonate + HF
show the reaction diagram
-
-
-
-
?
acephate + H2O
?
show the reaction diagram
-
-
-
-
?
CVX + H2O
?
show the reaction diagram
-
i.e. diethylamino-ethyl-O-butyl methylphosphonothioate
-
-
?
cyclosarin + H2O
methyl-phosphonic acid monofluoride + cyclohexanol
show the reaction diagram
-
-
-
-
?
demethon-S + H2O
?
show the reaction diagram
-
-
-
-
?
diisopropyl fluorophosphate + H2O
?
show the reaction diagram
-
-
-
-
?
diisopropylfluorophosphate + H2O
diisopropyl phosphate + HF
show the reaction diagram
-
-
-
-
?
dimefox + H2O
?
show the reaction diagram
-
-
-
-
?
isopropyl methylphosphonofluoridate + H2O
propan-2-yl methylphosphonate + HF
show the reaction diagram
-
-
-
-
?
malathion + H2O
?
show the reaction diagram
-
-
-
-
?
methyl paraoxon + H2O
4-nitrophenol + dimethyl phosphate
show the reaction diagram
-
-
-
-
?
methyl parathion + H2O
4-nitrophenol + dimethyl thiophosphate
show the reaction diagram
-
-
-
-
?
methyl parathion + H2O
?
show the reaction diagram
-
-
-
-
?
methyl parathion + H2O
dimethyl thiophosphate + 4-nitrophenol
show the reaction diagram
-
-
-
-
?
paraoxon + H2O
4-nitrophenol + diethyl phosphate
show the reaction diagram
paraoxon + H2O
diethylphosphate + 4-nitrophenol
show the reaction diagram
parathion + H2O
4-nitrophenol + diethyl thiophosphate
show the reaction diagram
-
-
-
-
?
parathion + H2O
?
show the reaction diagram
-
-
-
-
?
parathion + H2O
diethylthiophosphate + 4-nitrophenol
show the reaction diagram
-
i.e. diethyl-4-nitrophenyl thiophosphate
-
-
?
russian VX + H2O
methyl-phosphonothioic acid S-(2-diethylamino-ethyl) ester + 2-methylpropanol
show the reaction diagram
-
-
-
-
?
sarin + H2O
?
show the reaction diagram
-
-
-
-
?
sarin + H2O
methyl-phosphonic acid monofluoride + isopropyl alcohol
show the reaction diagram
-
-
-
-
?
soman + H2O
methyl-phosphonic acid monofluoride + 1,2,2-trimethylpropanol
show the reaction diagram
-
-
-
-
?
tabun + H2O
cyanophosphonic acid dimethylamide + ethanol
show the reaction diagram
-
-
-
-
?
VR + H2O
?
show the reaction diagram
-
i.e. diethylamino-ethyl-O-isobutyl methylphosphonothioate
-
-
?
VX + H2O
?
show the reaction diagram
-
i.e. diisopropylamino-ethyl-O-ethyl methylphosphonothioate
-
-
?
VX + H2O
S-[2-(diisopropylamino)ethyl]-methylphosphonothioic acid + ethanol
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
diethyl-paraoxon + H2O
diethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
dimethyl-paraoxon + H2O
dimethyl phosphate + 4-nitrophenol
show the reaction diagram
dimethyl-parathion + H2O
dimethyl thiophosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
O-ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate + H2O
?
show the reaction diagram
i.e. VX
-
-
?
paraoxon + H2O
diethyl phosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
parathion + H2O
diethyl thiophosphate + 4-nitrophenol
show the reaction diagram
-
-
-
?
additional information
?
-
the enzyme is involved in detoxification of a broad range of organophosphorus pesticides and chemical warfare agents sarin and VX
-
-
?
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Cd2+
activates slightly
Cu2+
-
activates
Mn2+
-
activates
Ni2+
-
activates
additional information
-
requirement for divalent metal ions, the activity of recombinant His6-OPH decreases in the series: Co2+, Ni2+, Mn2+, Cu2+, Zn2+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
diethyl 4-methylbenzylphosphonate
the inhibitor does not bind at the active site, but binds exclusively into a well-defined surface pocket 12 A away from the active site, docking, overview
NiCl2
is a non-competitive inhibitor of Co-PTE
ZnCl2
induces a non-competitive partial inhibition of Zn2+-PTE and Co2+-PTE at pH 8.5. Inhibition of hydrolysis of O,O-(3-chloro-4-methyl-2-oxo-2H-chromen-7-yl)ethylmethylphosphonate is one order of magnitude higher than for paraoxon. Inhibition results from interactions with colloidal Zn(OH)2 formed in alkaline buffer that alters the catalytic machinery. ZnCl2 has an inhibitory effect when a protein environment stabilizes PTE. Adding ZnCl2 to the enzyme stabilized by beta-lactoglobulin results in 10% and 20% decrease in activity for Co-PTE and Zn-PTE, respectively
1-hexynyl diethyl phosphate
-
rapid inactivation, reactiviation by increasing pH
1-hexynyl dimethyl phosphate
-
rapid inactivation, reactiviation by increasing pH
1-hexynyl diphenyl phosphate
-
rapid inactivation, reactiviation by increasing pH
1-propynyl diethyl phosphate
-
rapid inactivation, reactiviation by increasing pH
diisopropyl methyl phosphonate
-
-
ethynyl diethyl phosphate
-
rapid inactivation, reactiviation by increasing pH
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
beta-Lactoglobulin
maximum activity in the presence of 0.1% (w/v) beta-lactoglobulin. There are neither additives nor synergistic effect of ZnCl2 and beta-lactoglobulin
-
paraoxon
stabilizes
additional information
-
efficient enzyme-catalyzed hydrolysis of OPC requires essential stabilization of the enzyme in the acidic pH region
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.35 - 3.2
(S)-[2-[di(propan-2-yl)amino]ethyl] O,O-diethyl phosphorothioate
0.15 - 4
4-acetylphenyl (R)-2-methylpropyl methylphosphonate
0.03 - 4.5
4-acetylphenyl (S)-2-methylpropyl methylphosphonate
1.9 - 7.6
demeton-S
1.6 - 7
diethyl 4-chlorophenyl phosphate
0.3 - 0.6
diethyl 4-chlorophenyl thiophosphate
0.34 - 1.9
diethyl 4-nitrophenyl phosphate
0.0017 - 0.081
diethyl-paraoxon
0.012 - 0.4
paraoxon
0.6 - 1.7
parathion
0.073 - 0.21
methylparathion
0.01 - 0.29
paraoxon
0.015 - 0.06
parathion
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.1 - 51
(S)-[2-[di(propan-2-yl)amino]ethyl] O,O-diethyl phosphorothioate
17 - 174
4-acetylphenyl (R)-2-methylpropyl methylphosphonate
3 - 166
4-acetylphenyl (S)-2-methylpropyl methylphosphonate
3.3 - 50
demeton-S
0.13 - 0.36
diethyl 4-chlorophenyl phosphate
1.1 - 2.4
diethyl 4-chlorophenyl thiophosphate
2060 - 2500
diethyl 4-nitrophenyl phosphate
15 - 2230
diethyl-paraoxon
50 - 10500
paraoxon
300 - 720
parathion
5
1,2,2-trimethylpropyl methylphosphonofluoridate
-
-
41
diisopropylfluorophosphate
-
-
56
isopropylmethylphosphonofluoridate
-
-
125 - 5100
paraoxon
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.264 - 85
(S)-[2-[di(propan-2-yl)amino]ethyl] O,O-diethyl phosphorothioate
21.4 - 333.3
4-acetylphenyl (R)-2-methylpropyl methylphosphonate
5.55 - 883.3
4-acetylphenyl (S)-2-methylpropyl methylphosphonate
1920 - 27531
diethyl-paraoxon
140 - 10000
paraoxon
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.25 - 0.99
diethyl 4-methylbenzylphosphonate
3
NiCl2
Co2+-PTE, at pH 8.5 and 30°C, with paraoxon as substrate
0.052 - 0.63
ZnCl2
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.53
ZnCl2
Brevundimonas diminuta
Co2+-PTE, at pH 8.5 and 30°C, with O,O-(3-chloro-4-methyl-2-oxo-2H-chromen-7-yl)ethylmethylphosphonate as substrate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.083
substrate O-ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate, pH 8.0, 25°C, enzyme mutant C23 administered in guinea pigs in vivo
0.567
substrate cyclosarin, pH 8.0, 25°C, enzyme administered in guinea pigs in vivo
1.4
substrate cyclosarin, pH 8.0, 37°C, enzyme administered in guinea pigs in vivo
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.5 - 10.5
-
3-fluorotyrosine-containing recombinant His6-tagged OPH
9.5 - 10.5
-
recombinant His6-tagged wild-type OPH
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.5 - 12
-
the fluorinated enzyme exhibits stable catalytic activity in the pH range, 35-50% of maximal activity at pH 5.5 and pH 12.0
7 - 12
-
wild-type enzyme
additional information
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
45 - 50
-
3-fluorotyrosine-containing recombinant His6-tagged OPH
50 - 55
-
native OPH
53 - 58
-
recombinant His6-tagged OPH
57 - 62
-
recombinant His6-tagged wild-type OPH
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.4
-
native OPH, isoelectric focusing
7.6
-
the fluorinated enzyme exhibits stable catalytic activity in the pH range, 35-50% of maximal activity at pH 5.5 and pH 12.0
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
enzyme OPH is tightly bound to the inner membrane. It is targeted to the inner membrane of Brevundimonas diminuta in a pre-folded conformation by the twin arginine transport (Tat) pathway
Manually annotated by BRENDA team
additional information
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
opd null mutants of Brevundimonas diminuta fail to grow using the organophosphate insecticide methyl parathion as sole source of phosphate
physiological function
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
OPD_BREDI
365
1
39004
Swiss-Prot
-
PDB
SCOP
CATH
UNIPROT
ORGANISM
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
36000
gel filtration
36290
82000
x * 82000, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 82000, SDS-PAGE
homodimer
monomer
?
-
x * 37691.1, recombinant N-terminally His6-tagged mutant 3-fluorotyrosine-containing OPH, mass spectrometry, x * 37602.9, recombinant N-terminally His6-tagged wild-type OPH, mass spectrometry
dimer
-
homodimer, crystallization data
additional information
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
lipoprotein
purified enzyme OPH is modified with the fatty acids palmitate and stearate, identification of fatty acids attached to the enzyme. Mature OPH is linked to myristic and oleic fatty acids
proteolytic modification
the N-terminal signal peptide of OPH is cleaved off during biosynthesis and therefore cannot serve as a signal anchor. In silico analysis of the OPH signal peptide predicts the existence of both signal peptidase II (SpaseII) and multiple signal peptidase I (SpaseI) cleavage sites in pre-OPH, with the SpaseII cleavage site predicted with the highest level of confidence
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapour diffusion method, in 10% PEG6000, 0.1 M HEPES, pH 7.0, 1% diethyl 4-methylbenzylphosphonate, and 5 mM sodium azide
purified recombinant enzyme mutants A80V/F132V/K185R/H254Q/H257Y/I274N/S308L and I106C/F132V/H254Q/H257Y/A270V/L272M/I274N/S308L, vapor diffusion method, mixing of 0.001 ml of 10 mg/ml protein in 50 mM HEPES, pH 8.5, and 1.0 mM CoCl2, with 0.001 ml of precipitant solution containing 100 mM sodium cacodylate, pH 5.5-7.0, 0.2 M magnesium acetate, and 15-30% PEG 8000, and equilbration against 0.5 ml of the precipitant solution, 7-21 days, 18°C, X-ray diffraction structure determination and analysis, molecular replacement using the coordinates of wild-type PTE, PDB ID 1DPM, as the search model
purified recombinant mutant enzyme H254R bound to inhibitor diethyl 4-methylbenzylphosphonate, 5.8 mg/ml protein in 20 mM HEPES, pH 7.5, hanging drop vapour diffusion method, room temperature, the precipitation solution contains 9% PEG 6000, 100 mM CHES, pH 9.0, 1% diethyl 4-methylbenzylphosphonate, and 5 mM sodium azide, no Co2+ is added, X-ray diffraction structure determination and analysis at 1.9 A resolution
in complex with diisopropyl methyl phosphonate and with triethyl phosphate
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A204C/T234C
site-directed mutagenesis, Ala204 and Thr234 are located on the alpha-helices and gamma turn, respectively, thermostability of the mutant enzyme is increased compared to the wild-type, due to increased rigidity
A80V/F132V/K185R/H254Q/H257Y/I274N
site-directed mutagenesis
A80V/F132V/K185R/H254Q/H257Y/I274N/S308L
site-directed mutagenesis, the mutant combines expression-enhancing mutations (A80V/K185R/I274N) with additional changes in the active site to achieve a high kcat/Km for the hydrolysis of the SP-enantiomer of ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate, i.e. VX. Three-dimensional structure, overview
A80V/I106C/F132V/K185R/H254Q/H257Y/I274N
site-directed mutagenesis
A80V/I106C/F132V/K185R/H254Q/H257Y/I274N/S308L
site-directed mutagenesis
A80V/I106G/F132V/K185R/H254Q/H257Y/I274N
site-directed mutagenesis
A80V/I106G/F132V/K185R/H254Q/H257Y/I274N/S308L
site-directed mutagenesis
C24S
site-directed mutagenesis, mutation of the invariant cysteine residue in the lipobox motif of the OPH signal peptide
D233A
site-directed mutagenesis, structure and kinetics of the mutant enzyme with different bound metal ions compared to the wild-type enzyme, overview
D233N
site-directed mutagenesis, structure and kinetics of the mutant enzyme with different bound metal ions compared to the wild-type enzyme, overview
D301A
site-directed mutagenesis, structure and kinetics of the mutant enzyme with different bound metal ions compared to the wild-type enzyme, overview
D301N
site-directed mutagenesis, structure and kinetics of the mutant enzyme with different bound metal ions compared to the wild-type enzyme, overview
F132V/H254Q/H257F
site-directed mutagenesis
F132V/H254Q/H257F/S308L
site-directed mutagenesis
G74C/A78C
site-directed mutagenesis, Gly74 and Ala78 are located on the gamma turn and beta-turn, respectively, which link gamma turn and beta-turn adjacent together, thermostability of the mutant enzyme is decreased compared to the wild-type, due to increased flexibility
H123A
KM remains unaffected, whereas kcat decreases 2.5fold. Alters the bacterial expression yield of Co2+-PTE and Ki for Zn(OH)2 inhibition
H123I
KM remains unaffected, whereas kcat decreases 10fold. Alters the bacterial expression yield of Co2+-PTE and Ki for Zn(OH)2 inhibition
H123N
KM remains unaffected, whereas kcat decreases 80fold. Alters the bacterial expression yield of Co2+-PTE and Ki for Zn(OH)2 inhibition
H254A
site-directed mutagenesis, structure and kinetics of the mutant enzyme with different bound metal ions compared to the wild-type enzyme, overview
H254N
site-directed mutagenesis, structure and kinetics of the mutant enzyme with different bound metal ions compared to the wild-type enzyme, overview
H254Q/H257F
site-directed mutagenesis, the mutant exhibits a 100fold improvement for the hydrolysis of O-ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate, i.e. VX, relative to the wild-type enzyme
H254R
H254R/H257F
the mutant enzyme shows reduced activity towards paraoxon and increased activity towards demeton-S compared to the wild type enzyme
H254R/H257L
the variant has higher turnover numbers for the chemical warfare agents O-ethyl S-diisopropyl aminomethyl methylphosphonothioate and O-isobutyl S-N,N-diethylaminoethyl methylphosphonothioate compared to the wild type enzyme, the demeton-S activity is over 14times higher as that of the wild type enzyme
H257L
the mutant enzyme shows increased activity towards paraoxon and reduced activity toward demeton-S compared to the wild type enzyme
I106C
site-directed mutagenesis
I106C/F132V/H254Q/H257F
site-directed mutagenesis
I106C/F132V/H254Q/H257F/S308L
site-directed mutagenesis, the mutant shows a similar catalytic efficiency for the hydrolysis of ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate, i.e. VX, as mutant H254Q/H257F, but a 3fold improvement in kcat
I106C/F132V/H254Q/H257Y/A270V/L272M/I274N/S308L
site-directed mutagenesis, the mutant has a kcat value for ethyl-S-(2-diisopropylaminoethyl)methylphosphonothiolate, i.e. VX, that is enhanced by 150fold relative to wild-type PTE. Three-dimensional structure, overview
I106C/F132V/H254Q/H257Y/A270V/L272M/I274N/S308L/Y309F
site-directed mutagenesis
I106G
site-directed mutagenesis
I106G/F132V/H254Q/H257F/S308L
site-directed mutagenesis
I106G/F132V/H254Q/H257Y/A270V/L272M/I274N/S308L
site-directed mutagenesis
L308S
site-directed mutagenesis
T128C/ E124C
site-directed mutagenesis, thermostability and kcat of the mutant enzyme are increased compared to the wild-type
T128C/ E153C
site-directed mutagenesis, Thr128 and Glu153 are located on the beta-sheet and alpha-helices, respectively, thermostability of the mutant enzyme is increased compared to the wild-type, due to increased rigidity
Y309F
I106A/F132A/H254Y
-
stereoselectivity of enzyme toward chiral phosphorous center of substrate is reversed
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
65
60 min, the wild-type enzyme had a residual activity of 31%, the residual activities of enzyme mutants G74C/A78C, A204C/T234C, and T128C/E153C are 28%, 33%, and 46.36%, respectively
37
-
the conjugates display improved thermal stability, with a half-life at 37°C and pH 7.4 increasing 48fold from 0.256 h to 12.3 h for native phosphotriesterase and phosphotriesterase-MPEG 5 kDa, respectively
50
-
15 min, purified recombinant His6-tagged wild-type OPH, 50% remaining activity
60
-
15 min, purified 3-fluorotyrosine-containing recombinant His6-tagged OPH, stable up to
75
-
15 min, purified 3-fluorotyrosine-containing recombinant His6-tagged OPH, loss of 20% activity
85
-
15 min, purified 3-fluorotyrosine-containing recombinant His6-tagged OPH, complete inactivation
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
efficient enzyme-catalyzed hydrolysis of OPC requires essential stabilization of the enzyme in the acidic pH region
-
the hydrophobic poly(propylene oxide) blocks of Pluronic interact with hydrophobic amino acids of the enzyme, resulting in an increased activity and pot life for dilute concentrations, methanol inhibition, enhanced stability against high temperature, and extended shelf life
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
by ion exchange chromatography, affinity chromatography and ultrafiltration
membrane preparation from wild-type and mutant cells, solubilization of OPH from the inner membrane using a buffer that contains Triton X-100, Triton X-114, n-dodecyl beta-D-maltoside, and digitonin, followed by dialysis, and immunoaffinity chromatography
recombinant mutant enzyme
recombinant wild-type and mutant enzymes from cell-free enzyme extract by precipitation of nucleic acids by protamine sulfate, ammonium sulfate fractionation, and gel filtration, followed by anion exchange chromatography
recombinant wild-type and mutant enzymes from Escherichia coli strain BL21 by ammonium sulfate fractionation, anion exchange chromatography, and gel filtration
recombinant His6-tagged from Escherichia coli strain SG13009 OPH 29-43fold by agarose-based nickel affinity chromatography, and 60fold by affinity chromatography on divalent metal ion-iminodiacetic acid–polyacrylamide cryogel, usage of Ni2+, Co2+ or Cu2+ as methyl ions, method development and evaluation, effect of sample pretreatment on His6-OPH purification, overview
-
recombinant His6-tagged OPH from Escherichia coli by nickel affinity chromatography
-
recombinant N-terminally His6-tagged OPH from Escherichia coli strain B-2935 by Co2+-iminodiacetic acid-polyacrylamide cryogel affinity chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
directed evolution of phosphotriesterase from Pseudomonas diminuta for heterologous expression in Escherichia coli results in stabilization of the metal-free state
expressed in Escherichia coli DH5 alpha cells
expression of mutant enzyme
expression of wild-type and mutant enzymes in Escherichia coli strain BL21
gene opd is encoded by the organophosphate degradation (opd) island, recombinant expression of His10-tagged wild-type enzyme in Brevundimonas diminuta enzyme-deficient strain DS010. Protein-protein interactions study using the bacterial two-hybrid system in Escherichia coli strain BTH101
gene opd, recombinant expression of wild-type and mutant MBP-tagged enzymes in Escherichia coli strain BL21(DE3)
PTEm gene without the 29-amino acid leader cloned into pET17b vector, expressed in Escherichia coli HMS 174 (DE3) pLysS. PCR fragments of mutants cloned into the expression plasmid pET17b and expressed in Escherichia coli BL21 (DE3) pLysS
recombinant expression of wild-type and mutant enzymes in Escherichia coli strain BL21(DE3)
expression of His6-tagged OPH in enzyme-deficient Escherichia coli strain SG13009
-
expression of His6-tagged OPH in Escherichia coli strains DH5alpha and SG13009, the His6-tagged enzyme shows altered properties compared to the wild-type enzyme
-
expression of N-terminally His6-tagged wild-type and 3-fluorotyrosine-containing OPH in Escherichia coli strain B-2935 devoid of the metabolic ways of tyrosine biosynthesis, the presence of 3-F-Tyr in the medium inhibits the cell growth
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
biotechnology
future biotechnological developments of PTE as a detoxifying enzyme
environmental protection
the enzyme is involved in detoxification of organophosphorus pesticides and chemical warfare agents sarin and VX
biotechnology
-
chemo-enzymatic procedure for chiral synthesis of soman analogues, use of mutants to reverse stereoselectivity
degradation
-
activity and stability of organophosphorus hydrolase are enhanced by interactions between the hydrophobic poly(propylene oxide) block of amphiphilic Pluronics and the enzyme. The strategy provides an efficient route to new formulations for decontaminating organophosphate neurotoxins
additional information
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Dumas, D.P.; Durst, H.D.; Landis, W.G.; Raushel, F.M.; Wild, J.R.
Inactivation of organophosphorus nerve agents by the phosphotriesterase from Pseudomonas diminuta
Arch. Biochem. Biophys.
277
155-159
1990
Brevundimonas diminuta
Manually annotated by BRENDA team
Efremenko, E.N.; Sergeeva, V.S.
Organophosphate hydrolase - an enzyme catalyzing degradation of phosphorus-containing toxins and pesticides
Russ. Chem. Bull. (Translation of Izvestiya Akademii Nauk, Seriya Khimicheskaya)
50
1826-1832
2001
Brevundimonas diminuta, Flavobacterium sp., Rattus norvegicus
-
Manually annotated by BRENDA team
Benning, M.M.; Hong, S.B.; Raushel, F.M.; Holden, H.M.
The binding of substrate analogs to phosphotriesterase
J. Biol. Chem.
275
30556-30560
2000
Brevundimonas diminuta
Manually annotated by BRENDA team
Banzon, J.A.; Kuo, J.M.; Miles, B.W.; Fischer, D.R.; Stang, P.J.; Raushel, F.M.
Mechanism-based inactivation of phosphotriesterase by reaction of a critical histidine with a ketene intermediate
Biochemistry
34
743-749
1995
Brevundimonas diminuta
Manually annotated by BRENDA team
Li, W.S.; Lum, K.T.; Chen-Goodspeed, M.; Sogorb, M.A.; Raushel, F.M.
Stereoselective detoxification of chiral sarin and soman analogues by phosphotriesterase
Bioorg. Med. Chem.
9
2083-2091
2001
Brevundimonas diminuta
Manually annotated by BRENDA team
Grimsley, J.K.; Calamini, B.; Wild, J.R.; Mesecar, A.D.
Structural and mutational studies of organophosphorus hydrolase reveal a cryptic and functional allosteric-binding site
Arch. Biochem. Biophys.
442
169-179
2005
Brevundimonas diminuta (P0A434)
Manually annotated by BRENDA team
Herkenhoff, S.; Szinicz, L.; Rastogi, V.K.; Cheng, T.C.; DeFrank, J.J.; Worek, F.
Effect of organophosphorus hydrolysing enzymes on obidoxime-induced reactivation of organophosphate-inhibited human acetylcholinesterase
Arch. Toxicol.
78
338-343
2004
Brevundimonas diminuta
Manually annotated by BRENDA team
Aubert, S.D.; Li, Y.; Raushel, F.M.
Mechanism for the hydrolysis of organophosphates by the bacterial phosphotriesterase
Biochemistry
43
5707-5715
2004
Brevundimonas diminuta (P0A434), Brevundimonas diminuta
Manually annotated by BRENDA team
Briseno-Roa, L.; Hill, J.; Notman, S.; Sellers, D.; Smith, A.P.; Timperley, C.M.; Wetherell, J.; Williams, N.H.; Williams, G.R.; Fersht, A.R.; Griffiths, A.D.
Analogues with fluorescent leaving groups for screening and selection of enzymes that efficiently hydrolyze organophosphorus nerve agents
J. Med. Chem.
49
246-255
2006
Brevundimonas diminuta, Homo sapiens
Manually annotated by BRENDA team
Roodveldt, C.; Tawfik, D.S.
Directed evolution of phosphotriesterase from Pseudomonas diminuta for heterologous expression in Escherichia coli results in stabilization of the metal-free state
Protein Eng. Des. Sel.
18
51-58
2005
Brevundimonas diminuta (P0A434), Brevundimonas diminuta
Manually annotated by BRENDA team
Efremenko, E.; Votchitseva, Y.; Plieva, F.; Galaev, I.; Mattiasson, B.
Purification of His6-organophosphate hydrolase using monolithic supermacroporous polyacrylamide cryogels developed for immobilized metal affinity chromatography
Appl. Microbiol. Biotechnol.
70
558-563
2006
Brevundimonas diminuta
Manually annotated by BRENDA team
Votchitseva, Y.A.; Efremenko, E.N.; Aliev, T.K.; Varfolomeyev, S.D.
Properties of hexahistidine-tagged organophosphate hydrolase
Biochemistry (Moscow)
71
167-172
2006
Brevundimonas diminuta, Brevundimonas diminuta VKM B-1297
Manually annotated by BRENDA team
Votchitseva, Y.A.; Efremenko, E.N.; Varfolomeyev, S.D.
Insertion of an unnatural amino acid into the protein structure: preparation and properties of 3-fluorotyrosine-containing organophosphate hydrolase
Russ. Chem. Bull.
55
369-374
2006
Brevundimonas diminuta
-
Manually annotated by BRENDA team
Reeves, T.E.; Wales, M.E.; Grimsley, J.K.; Li, P.; Cerasoli, D.M.; Wild, J.R.
Balancing the stability and the catalytic specificities of OP hydrolases with enhanced V-agent activities
Protein Eng. Des. Sel.
21
405-412
2008
Brevundimonas diminuta (P0A434)
Manually annotated by BRENDA team
Carletti, E.; Jacquamet, L.; Loiodice, M.; Rochu, D.; Masson, P.; Nachon, F.
Update on biochemical properties of recombinant Pseudomonas diminuta phosphotriesterase
J. Enzyme Inhib. Med. Chem.
24
1045-1055
2009
Brevundimonas diminuta (P0A434), Brevundimonas diminuta
Manually annotated by BRENDA team
Trovaslet-Leroy, M.; Musilova, L.; Renault, F.; Brazzolotto, X.; Misik, J.; Novotny, L.; Froment, M.T.; Gillon, E.; Loiodice, M.; Verdier, L.; Masson, P.; Rochu, D.; Jun, D.; Nachon, F.
Organophosphate hydrolases as catalytic bioscavengers of organophosphorus nerve agents
Toxicol. Lett.
206
14-23
2011
Brevundimonas diminuta, Homo sapiens
Manually annotated by BRENDA team
Kim, M.; Gkikas, M.; Huang, A.; Kang, J.W.; Suthiwangcharoen, N.; Nagarajan, R.; Olsen, B.D.
Enhanced activity and stability of organophosphorus hydrolase via interaction with an amphiphilic polymer
Chem. Commun. (Camb. )
50
5345-5348
2014
Brevundimonas diminuta
Manually annotated by BRENDA team
Goldsmith, M.; Eckstein, S.; Ashani, Y.; Greisen, P.; Leader, H.; Sussman, J.L.; Aggarwal, N.; Ovchinnikov, S.; Tawfik, D.S.; Baker, D.; Thiermann, H.; Worek, F.
Catalytic efficiencies of directly evolved phosphotriesterase variants with structurally different organophosphorus compounds in vitro
Arch. Toxicol.
90
2711-2724
2016
Brevundimonas diminuta (P0A434), Brevundimonas diminuta
Manually annotated by BRENDA team
Bigley, A.N.; Mabanglo, M.F.; Harvey, S.P.; Raushel, F.M.
Variants of phosphotriesterase for the enhanced detoxification of the chemical warfare agent VR
Biochemistry
54
5502-5512
2015
Brevundimonas diminuta (P0A434)
Manually annotated by BRENDA team
Ashani, Y.; Leader, H.; Aggarwal, N.; Silman, I.; Worek, F.; Sussman, J.L.; Goldsmith, M.
Invitro evaluation of the catalytic activity of paraoxonases and phosphotriesterases predicts the enzyme circulatory levels required for invivo protection against organophosphate intoxications
Chem. Biol. Interact.
259
252-256
2016
Pseudomonas sp., Brevundimonas diminuta (P0A434), Homo sapiens (P27169), Agrobacterium tumefaciens (Q93LD7)
Manually annotated by BRENDA team
Santillan, J.Y.; Dettorre, L.A.; Lewkowicz, E.S.; Iribarren, A.M.
New and highly active microbial phosphotriesterase sources
FEMS Microbiol. Lett.
363
fnw276
2016
Streptomyces phaeochromogenes, Pseudarthrobacter oxydans, Nocardia asteroides, Streptomyces griseus, Rhodococcus corynebacterioides, Brevundimonas diminuta (P0A434), Brevundimonas diminuta, Streptomyces phaeochromogenes CCRC 10811, Pseudarthrobacter oxydans ATCC 14358, Pseudarthrobacter oxydans ATCC 14359, Nocardia asteroides ATCC 19296, Rhodococcus corynebacterioides ATCC 14898, Streptomyces griseus ATCC 39116
Manually annotated by BRENDA team
Parthasarathy, S.; Parapatla, H.; Nandavaram, A.; Palmer, T.; Siddavattam, D.
Organophosphate hydrolase is a lipoprotein and interacts with Pi-specific transport system to facilitate growth of Brevundimonas diminuta using OP insecticide as source of Phosphate
J. Biol. Chem.
291
7774-7785
2016
Brevundimonas diminuta (P0A434), Brevundimonas diminuta
Manually annotated by BRENDA team
Farnoosh, G.; Khajeh, K.; Latifi, A.M.; Aghamollaei, H.
Engineering and introduction of de novo disulphide bridges in organophosphorus hydrolase enzyme for thermostability improvement
J. Biosci.
41
577-588
2016
Brevundimonas diminuta (P0A434)
Manually annotated by BRENDA team
Santillan, J.Y.; Dettorre, L.A.; Lewkowicz, E.S.; Iribarren, A.M.
New and highly active microbial phosphotriesterase sources
FEMS Microbiol. Lett.
363
fnw276
2016
Streptomyces phaeochromogenes, Pseudarthrobacter oxydans, Nocardia asteroides, Streptomyces griseus, Rhodococcus corynebacterioides, Brevundimonas diminuta (P0A434), Brevundimonas diminuta, Streptomyces phaeochromogenes CCRC 10811, Pseudarthrobacter oxydans ATCC 14358, Pseudarthrobacter oxydans ATCC 14359, Nocardia asteroides ATCC 19296, Rhodococcus corynebacterioides ATCC 14898, Streptomyces griseus ATCC 39116
Manually annotated by BRENDA team