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Information on EC 3.1.4.12 - sphingomyelin phosphodiesterase and Organism(s) Streptomyces griseocarneus and UniProt Accession A6P7M9

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EC Tree
     3 Hydrolases
         3.1 Acting on ester bonds
             3.1.4 Phosphoric-diester hydrolases
                3.1.4.12 sphingomyelin phosphodiesterase
IUBMB Comments
Has very little activity on phosphatidylcholine.
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This record set is specific for:
Streptomyces griseocarneus
UNIPROT: A6P7M9
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Word Map
The taxonomic range for the selected organisms is: Streptomyces griseocarneus
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria
Synonyms
sphingomyelinase, alpha-toxin, acid sphingomyelinase, smase, neutral sphingomyelinase, asmase, nsmase2, nsmase, smpd1, n-smase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
acid sphingomyelinase
-
-
-
-
alkaline sphingomyelinase
-
-
-
-
aSMase
-
-
-
-
Beta-hemolysin
-
-
-
-
Beta-toxin
-
-
-
-
Lyso-PAF-PLC
-
-
-
-
N-SMase
-
-
-
-
neutral sphingomyelinase
-
-
-
-
nSMase
-
-
-
-
phosphodiesterase, sphingomyelin
-
-
-
-
SMase
-
-
-
-
SMPLC
-
-
-
-
sphingomyelin phosphodiesterase
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-
-
-
sphingomyelinase
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-
-
-
sphingomyelinase C
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-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of phosphoric ester
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-
-
-
PATHWAY SOURCE
PATHWAYS
-
-, -
SYSTEMATIC NAME
IUBMB Comments
sphingomyelin cholinephosphohydrolase
Has very little activity on phosphatidylcholine.
CAS REGISTRY NUMBER
COMMENTARY hide
9031-54-3
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
1,2-di [(cis)-9-octadecenoyl]-sn-glycero-3-phospho-(1-rac-glycerol) + H2O
?
show the reaction diagram
2.11% activity compared to sphingomyelin
-
-
?
1,2-di(cis-9-octadecenoyl)-sn-glycerol-3-phosphate + H2O
?
show the reaction diagram
9.04% activity compared to sphingomyelin
-
-
?
1,2-dioleoyl-sn-glycero-3-phospho-L-serine + H2O
?
show the reaction diagram
4.93% activity compared to sphingomyelin
-
-
?
1,2-dioleoyl-sn-glycero-3-phosphocholine + H2O
?
show the reaction diagram
0.7% activity compared to sphingomyelin
-
-
?
L-alpha-phosphatidylinositol + H2O
?
show the reaction diagram
5.63% activity compared to sphingomyelin
-
-
?
sphingomyelin + H2O
N-acylsphingosine + choline phosphate
show the reaction diagram
100% activity
-
-
?
additional information
?
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Cu2+
107% activity at 1 mM Mg2+
Fe2+
104% activity at 1 mM Mg2+
Mg2+
required, 100% activity at 2.5-10 mM Mg2+
Mn2+
required, 100% activity at 1 mM Mg2+
additional information
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
dithiothreitol
33.1% residual activity at 2 mM
EDTA
complete inhibition at 2 mM
phenylmethylsulfonyl fluoride
70.3% residual activity at 2 mM
SDS
67.7% residual activity at 2 mM
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
sodium cholate
129% relative activity at 6% (v/v) sodium cholate
Triton X-100
205% relative activity at 0.1% (v/v) Triton X-100
additional information
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.246
culture supernatant, in 50 mM glycine-NaOH buffer (pH 9.6), at 37°C
98.4
400fold purified enzyme, in 50 mM glycine-NaOH buffer (pH 9.0), at 55°C
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
A6P7M9_9ACTN
339
0
36221
TrEMBL
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
32102
1 * 32102, MALDI-TOF mass spectrometry
32130
calculated from amino acid sequence
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
1 * 32102, MALDI-TOF mass spectrometry
pH STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5 - 10
stable from pH 5.0-10.0, the enzyme retains activity between pH 5 and 10 for 30 min
704743
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4 - 60
the enzyme activity is stable between 4°C and 37°C for 30 min, activity drops abruptly above 37°C with less than 10% activity remaining at 50-60°C
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
ammonium sulfate precipitation, DEAE-Sepharose column chromatography, HiTrap Q column chromatography, Resource Q column chromatography, and Superdex 200 gel filtration
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli DH5alpha cells
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Sugimori, D.
Purification, characterization, and gene cloning of sphingomyelinase C from Streptomyces griseocarneus NBRC13471
J. Biosci. Bioeng.
108
293-298
2009
Streptomyces griseocarneus (A6P7M9), Streptomyces griseocarneus, Streptomyces griseocarneus NBRC13471 (A6P7M9)
Manually annotated by BRENDA team