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Information on EC 2.7.7.42 - [glutamine synthetase] adenylyltransferase and Organism(s) Escherichia coli and UniProt Accession P30870

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IUBMB Comments
This bacterial enzyme adenylates a tyrosine residue of EC 6.3.1.2, glutamine synthetase. The enzyme is bifunctional, and also catalyses a reaction that removes the adenyl group from the modified tyrosine residue (cf. EC 2.7.7.89, [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase) [7,8]. The two activities are present on separate domains.
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This record set is specific for:
Escherichia coli
UNIPROT: P30870
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Word Map
The taxonomic range for the selected organisms is: Escherichia coli
The expected taxonomic range for this enzyme is: Bacteria, Archaea, Eukaryota
Reaction Schemes
+
[glutamine synthetase]-L-tyrosine
=
+
[glutamine synthetase]-O4-(5'-adenylyl)-L-tyrosine
Synonyms
adenylyltransferase, glutamine synthetase adenylyltransferase, glutamine-synthetase adenylyltransferase, atp:glutamine synthetase adenylyltransferase, glutamine synthetase adenylyl transferase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ATP:[L-glutamate:ammonia ligase (ADP-forming)] adenylyl transferase
-
glutamine synthetase adenylyl transferase
-
glutamine synthetase ATase
-
adenosine triphosphate:glutamine synthetase adenylyltransferase
-
-
-
-
adenylyltransferase
-
-
adenylyltransferase, glutamine synthetase
-
-
-
-
ATP:glutamine synthetase adenylyltransferase
-
-
-
-
glutamine synthetase adenylyltransferase
glutamine-synthetase adenylyltransferase
-
-
-
-
GS ATase
-
-
[glutamate-ammonia-ligase] adenylyltransferase
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
ATP + [glutamine synthetase]-L-tyrosine = diphosphate + [glutamine synthetase]-O4-(5'-adenylyl)-L-tyrosine
show the reaction diagram
mechanism
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
adenylylation
-
deadenylylation
-
nucleotidyl group transfer
-
-
-
-
adenylylation
-
-
SYSTEMATIC NAME
IUBMB Comments
ATP:[glutamine synthetase]-L-tyrosine adenylyltransferase
This bacterial enzyme adenylates a tyrosine residue of EC 6.3.1.2, glutamine synthetase. The enzyme is bifunctional, and also catalyses a reaction that removes the adenyl group from the modified tyrosine residue (cf. EC 2.7.7.89, [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase) [7,8]. The two activities are present on separate domains.
CAS REGISTRY NUMBER
COMMENTARY hide
9077-66-1
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + glutamine synthetase
glutamine synthetase-AMP + diphosphate
show the reaction diagram
the enzyme has two activities, adenylyl removase and adenylyl transferase, which are located in distinct catalytic domains that are separated by a regulatory domain
-
-
?
glutamine synthetase-AMP + phosphate
ADP + glutamine synthetase
show the reaction diagram
the enzyme has two activities, adenylyl removase and adenylyl transferase, which are located in distinct catalytic domains that are separated by a regulatory domain
-
-
?
adenylyl-[glutamine synthase] + phosphate
glutamine synthase + ADP
show the reaction diagram
ADP + glutamine synthetase
adenyl-[glutamine synthetase] + phosphate
show the reaction diagram
-
-
-
-
r
ATP + glutamine synthetase
adenylated glutamine synthetase + diphosphate
show the reaction diagram
-
-
-
-
?
ATP + [glutamine synthetase]-L-tyrosine
diphosphate + [glutamine synthetase]-O4-(5'-adenylyl)-L-tyrosine
show the reaction diagram
-
-
-
-
?
ATP + [L-glutamate:ammonia ligase (ADP-forming)]
diphosphate + [L-glutamate:ammonia ligase (ADP-forming)] -(AMP)
show the reaction diagram
ATP + [L-glutamate:ammonia ligase (ADP-forming)]
diphosphate + [L-glutamate:ammonia ligase (ADP-forming)]-(AMP)
show the reaction diagram
glutamine synthase + ATP
adenylyl-[glutamine synthase] + diphosphate
show the reaction diagram
[L-glutamate:ammonia ligase (ADP-forming)]-O4-(5'-adenylyl)-L-tyrosine + H2O
adenylate + [L-glutamate:ammonia ligase (ADP-forming)]-L-tyrosine
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
ATP + glutamine synthetase
glutamine synthetase-AMP + diphosphate
show the reaction diagram
the enzyme has two activities, adenylyl removase and adenylyl transferase, which are located in distinct catalytic domains that are separated by a regulatory domain
-
-
?
glutamine synthetase-AMP + phosphate
ADP + glutamine synthetase
show the reaction diagram
the enzyme has two activities, adenylyl removase and adenylyl transferase, which are located in distinct catalytic domains that are separated by a regulatory domain
-
-
?
ADP + glutamine synthetase
adenyl-[glutamine synthetase] + phosphate
show the reaction diagram
-
-
-
-
r
ATP + [L-glutamate:ammonia ligase (ADP-forming)]
diphosphate + [L-glutamate:ammonia ligase (ADP-forming)] -(AMP)
show the reaction diagram
additional information
?
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
K+
-
adenylyltransferase and adenylyl-removing assay with 10 mM KCl
additional information
-
Ca2+, Zn2+ and Cu2+ at 10 mM are ineffective
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2-oxoglutarate
3-phosphoglycerate
-
66% inhibition at 20 mM
4-Methyl-L-glutamate
-
-
6-diazo-5-oxonorleucine
-
-
D-glutamine
-
-
diphosphate
DL-2-aminobutyric acid
-
-
glutamate
-
L- and D-isomer
glutamine
L-methionine
-
-
L-tryptophan
-
-
phosphate
-
-
PII signal transduction protein
-
adenylyl-removing activity
-
PII-UMP
-
adenylyltransferase activity
S-(2-Hydroxyethyl)-L-cysteine
-
-
signal transduction protein PII
-
inactivates the adenylyl-removing reaction
signal transduction protein PII-UMP
-
reaction is inhibited by signal transduction protein PII-UMP
sulfate
-
-
uridylated PII signal transduction protein
-
inhibits the adenylyltransferase reaction
-
uridylated signal transduction protein PII
-
the adenylyltransferase reaction is activated by glutamine and by the unmodified form of the PII signal transduction protein and is inhibited by the uridylylated form of PII, PII-UMP. PII, PII-UMP, and glutamine shift the enzyme among at least six different enzyme forms, two of which are inactive, one of which exhibits adenylyl-removing activity, and three of which exhibit adenylyltranferase activity. The enzyme appears to contain two distinct sites for PII and PII-UMP. The PII, PII-UMP, and glutamine sites are in communication. The binding of PII is favored by glutamine and its level reduced by PII-UMP, whereas glutamine and PII-UMP compete for the enzyme
-
additional information
-
inactivation scheme
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
glutamine
activates the adenylylation reaction of the AT-C domain
signal transduction protein PII
2-oxoglutarate
-
controls the extent of activation or inhibition of the enzyme by PII or PII-UMP. 2-oxoglutarate acts exclusively through its binding to PII and PII-UMP, and does not alter the binding of PII or PII-UMP to the enzyme
alpha-ketoglutarate
glutamine
L-glutamine
PII regulatory protein
PII signal transduction protein
-
PII-UMP
-
adenylyl-removing activity
signal transduction protein PII
signal transduction protein PII-UMP
-
activates the adenylyl-removing reaction, enzyme appears to have two distinct sites for signal transduction protein PII and signal transduction protein PII-UMP
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0009
adenylyl-[glutamine synthase]
-
adenylyl-removing activity, 0.00002 mM ATase, 1 mM alpha-ketoglutarate, 0.0005 mM signal transduction protein PII-UMP, 1 mM ATP, 5 mM potassium phosphate
-
0.15 - 3.9
ATP
0.0029 - 0.006
glutamine synthase
-
0.0032
glutamine synthetase
-
pH 7.5, 30°C
-
0.33
potassium phosphate
-
adenylyl-removing activity, 0.00005 mM ATase, 1 mM alpha-ketoglutarate, 0.0005 mM signal transduction protein PII-UMP, 1 mM ATP, 0.00034 GS-AMP mM
0.005 - 1.1
[L-glutamate:ammonia ligase (ADP-forming)]
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0008 - 90
signal transduction protein PII
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8 - 8.2
-
adenylylation
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.5 - 9.8
-
pH 5.5: about 50% of activity maximum, pH 9.8: about 35% of activity maximum
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
26
-
assay at
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4.2
-
isoelectric focusing
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
the adenylyltransferase is part of the cascade that regulates the activity of glutamine synthetase, a key compound of the cells machinery for the uptake of ammonia
physiological function
-
the adenylyltransferase and its substrate glutamine synthetase are part of a signal transduction system that includes two additional proteins, uridylyltransferase/uridylyl-removing enzyme and the PII protein
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
114000
-
1 * 114000, high speed sedimentation study of the enzyme in 6 M guanidine-HCl
115000
-
ultracentrifugation
145000
-
gel filtration
64000
-
low and high speed sedimentation equilibrium, 115000 MW enzyme form is slowly converted during storage at 4°C to a smaller protein that is active only in adenylylation, not in deadenylylation
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
-
1 * 114000, high speed sedimentation study of the enzyme in 6 M guanidine-HCl
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
structure of the N-terminal domain, residues 1-440, containing the regulatory and the adenylyl transferase domains, to 2.4 A resolution. Deduction of a model of the complete enzyme and a model for the complex with glutamine synthetase and the nitrogen signal transduction protein PII
the structure of the C-terminal fragment, containing residues 449-946, of glutamine synthetase adenylyl transferase is determined to a resolution of 2.4 A
hanging-drop vapour-diffusion method, C-terminal domain, residues 441-945
-
N-terminal domain, AT-N440
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D173N/D175N
-
inactivation of the N-terminal nucleotidyltransferase domain by mutation of both highly conserved aspartates, mutated enzyme shows adenylyltransferase activity but lacks adenylyl-removing activity
D463N/P467A/L469G
-
clustered point mutations in the central region of ATase, only 30-50% adenylyl-removing and adenylyltransferase activity of wild type enzyme, adenylyl-removing activity is inhibited by signal transduction protein PII and glutamine, adenylyltransferase activity is regulated by glutamine, signal transduction protein PII and signal transduction protein PII-UMP
D701N/D703N
-
inactivation of the C-terminal nucleotidyltransferase domain by mutation of both highly conserved aspartates, mutated enzyme shows adenylyl-removing activity but lacks adenylyltransferase activity
delata456-577
-
enzyme missing amino acids 456-577 from the central region of ATase lacks adenylyl-removing activity but retains adenylyltransferase activity, adenylyltransferase activity is inhibited by signal transduction protein PII and signal transduction protein PII-UMP
L525G/R527A/I528G
-
clustered point mutations in the central region of ATase, enzyme completely lacks adenylyl-removing activity but retains adenylyltransferase activity, adenylyltransferase activity is strongly enhanced by glutamine
R499A/R501A/D505N/P509A/L511G
-
clustered point mutations in the central region of ATase, enzyme completely lacks adenylyl-removing activity but retains adenylyltransferase activity, enzyme is inhibited by either signal transduction protein PII or signal transduction protein PII-UMP, adenylyltransferase activity is strongly enhanced by glutamine
R571A/P573A/L575G
-
clustered point mutations in the central region of ATase, enzyme shows approx. 12.5% of adenylyl-removing activity of wild-type enzyme, adenylyl-removing activity is inhibited by glutamine and signal transduction protein PII, adenylyltransferase activity is strongly activated by glutamine
additional information
pH STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
3
-
4°C, 12 h, loss of 70% of initial activity
643329
4 - 9
-
4°C, 12 h, no loss of activity
643329
9.5
-
4°C, 12 h, loss of 50% of initial activity
643329
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
bovine serum albumin, above 1 mg/ml, prevents inactivation at 4°C and 25°C and aggregation
-
considerably less stable in Tris or imidazole buffer than in a magnesium phosphate buffer
-
Mg2+, 20 mM protects to some extent against heat inactivation
-
no stabilization by ATP, CTP, Mn2+, glutamine, cysteine or mercaptoethanol each at 20 mM, 2 mM DTT, 20% glycerol, sucrose, polyethyleneglycol or urea at 1 M
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-80°C, purified enzyme, stored after quick freezing with liquid N2, potassium phosphate buffer, 10-100 mM, pH 7.6, 1 mM MgCl2, stable for months at enzyme concentration above 0.1 mg/ml
-
0°C-4°C, enzyme concentration above 1 mg/ml, stable for 12 days
-
4°C, enzyme solution of 3 mg/ml, loss of 50% activity within 30 days, the activity declines faster with more diluted enzyme solutions
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
2200fold to homogeneity
-
300fold to homogeneity
-
ammonium sulfate fractionation, DE-52 column chromatography, Bio-Gel A0.5M gel filtration, and phenyl Sepharose column chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
cloned in Escherichia coli
-
cloned in Escherichia coli DH5alpha, TG1 and JM109
-
overexpression
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
gene GlnE is cotranscribed with another gene, orfXE. All three Gln regulatory genes, uridylyl-transferase (GlnD), the PII protein (GlnB), and adenyly I-transferase (gInE) are constitutively expressed at a low level, i.e. their expression is independent of the nitrogen status and the RNA polymerase sigma factor
gene expression is slightly repressed under nitrogen-excess conditions, and the repression is more pronounced under excess nitrogen plus carbon-limiting conditions. Variations in the concentration of uridylyltransferase and adenylyltransferase also affect the rate of glutamine synthetase synthesis
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Ebner, E.; Wolf, D.; Gancedo, C.; Elssser, S.; Holzer, H.
ATP: glutamine synthetase adenylyltransferase from Escherichia coli B. Purification and properties
Eur. J. Biochem.
14
535-544
1970
Escherichia coli, Escherichia coli B / ATCC 11303
Manually annotated by BRENDA team
Wolf, D.; Ebner, E.; Hinze, H.
Inactivation, stabilization and some properties of ATP: glutamine synthetase adenylyltransferase from Escherichia coli B
Eur. J. Biochem.
25
239-244
1972
Escherichia coli, Escherichia coli B / ATCC 11303
Manually annotated by BRENDA team
Wolf, D.H.; Ebner, E.
Studies on the reaction mechanism of adenosine triphosphate: glutamine synthetase adenylyltransferase from Escherichia coli B. Conformational changes elicited by effectors and substrates: reactivity of sulfhydryl groups
J. Biol. Chem.
247
4208-4212
1972
Escherichia coli
Manually annotated by BRENDA team
Wohlhueter, R.M.; Ebner, E.; Wolf, D.H.
Studies on the reaction mechanism of adenosine triphosphate: glutamine synthetase adenylyltransferase from Escherichia coli B. Evidence for an ordered mechanism
J. Biol. Chem.
247
4213-4218
1972
Escherichia coli, Escherichia coli B / ATCC 11303
Manually annotated by BRENDA team
Rhee, S.G.; Park, R.; Wittenberger, M.
New enzymic assays for glutamine synthetase adenylytransferase and its regulatory protein PIIA
Anal. Biochem.
88
174-185
1978
Escherichia coli, Pseudomonas putida, Salmonella enterica subsp. enterica serovar Typhimurium
Manually annotated by BRENDA team
Caban, C.E.; Ginsburg, A.
Glutamine synthetase adenylyltransferase from Escherichia coli: purification and physical and chemical properties
Biochemistry
15
1569-1580
1976
Escherichia coli
Manually annotated by BRENDA team
Atkinson, M.R.; Ninfa, A.J.
Role of the GlnK signal transduction protein in the regulation of nitrogen assimilation in Escherichia coli
Mol. Microbiol.
29
431-447
1998
Escherichia coli
Manually annotated by BRENDA team
Xu, Y.; Wen, D.; Brown, C.; Chen, C.J.; Carr, P.D.; Ollis, D.L.; Vasudevan, S.G.
Expression, purification and crystallization of the C-terminal domain of Escherichia coli adenylyltransferase
Acta Crystallogr. Sect. F
F61
663-665
2005
Escherichia coli
Manually annotated by BRENDA team
Mehta, R.; Pearson, J.T.; Mahajan, S.; Nath, A.; Hickey, M.J.; Sherman, D.R.; Atkins, W.M.
Adenylylation and catalytic properties of Mycobacterium tuberculosis glutamine synthetase expressed in Escherichia coli versus Mycobacteria
J. Biol. Chem.
279
22477-22482
2004
Escherichia coli
Manually annotated by BRENDA team
Xu, Y.; Zhang, R.; Joachimiak, A.; Carr, P.D.; Huber, T.; Vasudevan, S.G.; Ollis, D.L.
Structure of the N-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase
Structure
12
861-869
2004
Escherichia coli
Manually annotated by BRENDA team
Jiang, P.; Pioszak, A.A.; Ninfa, A.J.
Structure-function analysis of glutamine synthetase adenylyltransferase (ATase, EC 2.7.7.49) of Escherichia coli
Biochemistry
46
4117-4132
2007
Escherichia coli, Escherichia coli YMC10
Manually annotated by BRENDA team
Jiang, P.; Mayo, A.E.; Ninfa, A.J.
Escherichia coli glutamine synthetase adenylyltransferase (ATase, EC 2.7.7.49): kinetic characterization of regulation by PII, PII-UMP, glutamine, and alpha-ketoglutarate
Biochemistry
46
4133-4146
2007
Escherichia coli
Manually annotated by BRENDA team
Clancy, P.; Xu, Y.; van Heeswijk, W.C.; Vasudevan, S.G.; Ollis, D.L.
The domains carrying the opposing activities in adenylyltransferase are separated by a central regulatory domain
FEBS J.
274
2865-2877
2007
Escherichia coli
Manually annotated by BRENDA team
Jiang, P.; Ninfa, A.J.
Reconstitution of Escherichia coli glutamine synthetase adenylyltransferase from N-terminal and C-terminal fragments of the enzyme
Biochemistry
48
415-423
2009
Escherichia coli
Manually annotated by BRENDA team
Xu, Y.; Carr, P.D.; Vasudevan, S.G.; Ollis, D.L.
Structure of the adenylylation domain of E. coli glutamine synthetase adenylyl transferase: Evidence for gene duplication and evolution of a new active site
J. Mol. Biol.
396
773-784
2010
Escherichia coli (P30870), Escherichia coli
Manually annotated by BRENDA team
Jiang, P.; Peliska, J.; Ninfa, A.
The regulation of Escherichia coli glutamine synthetase revisited: Role of 2-ketoglutarate in the regulation of glutamine synthetase adenylylation state
Biochemistry
37
12802-12810
1998
Escherichia coli
Manually annotated by BRENDA team
Rhee, S.; Park, S.; Koo, J.
The role of adenylyltransferase and uridylyltransferase in the regulation of glutamine synthetase in Escherichia coli
Curr. Top. Cell. Regul.
27
221-232
1985
Escherichia coli
Manually annotated by BRENDA team
Jaggi, R.; Van Heeswijk, W.; Westerhoff, H.; Ollis, D.; Vasudevan, S.
The two opposing activities of adenylyl transferase reside in distinct homologous domains, with intramolecular signal transduction
EMBO J.
16
5562-5571
1997
Escherichia coli (P30870)
Manually annotated by BRENDA team
Van Heeswijk, W.; Hoving, S.; Molenaar, D.; Stegeman, B.; Kahn, D.; Westerhoff, H.
An alternative P(II) protein in the regulation of glutamine synthetase in Escherichia coli
Mol. Microbiol.
21
133-146
1996
Escherichia coli (P30870)
Manually annotated by BRENDA team