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Information on EC 2.6.1.85 - aminodeoxychorismate synthase and Organism(s) Escherichia coli and UniProt Accession P05041

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EC Tree
     2 Transferases
         2.6 Transferring nitrogenous groups
             2.6.1 Transaminases
                2.6.1.85 aminodeoxychorismate synthase
IUBMB Comments
The enzyme is composed of two parts, a glutaminase (PabA in Escherichia coli) and an aminotransferase (PabB). In the absence of PabA and glutamine (but in the presence of Mg2+), PabB can convert ammonia and chorismate into 4-amino-4-deoxychorismate. PabA converts glutamine into glutamate only in the presence of stoichiometric amounts of PabB. In many organisms, including plants, the genes encoding the two proteins have fused to encode a single bifunctional protein. This enzyme is coupled with EC 4.1.3.38, aminodeoxychorismate lyase, to form 4-aminobenzoate. cf. EC 2.6.1.123, 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming).
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Escherichia coli
UNIPROT: P05041
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Word Map
The taxonomic range for the selected organisms is: Escherichia coli
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Reaction Schemes
hide(Overall reactions are displayed. Show all >>)
Synonyms
aminodeoxychorismate synthase, pabab, 4-amino-4-deoxychorismate synthase, adc synthase, pvadcs, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4-amino-4-deoxychorismate synthase
-
-
-
-
ADC synthase
-
-
-
-
aminodeoxychorismate synthase
-
-
PabB
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
chorismate + L-glutamine = 4-amino-4-deoxychorismate + L-glutamate
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
amino group transfer
-
-
-
-
nucleophilic substitution
-
-
PATHWAY SOURCE
PATHWAYS
-
-, -
SYSTEMATIC NAME
IUBMB Comments
chorismate:L-glutamine aminotransferase
The enzyme is composed of two parts, a glutaminase (PabA in Escherichia coli) and an aminotransferase (PabB). In the absence of PabA and glutamine (but in the presence of Mg2+), PabB can convert ammonia and chorismate into 4-amino-4-deoxychorismate. PabA converts glutamine into glutamate only in the presence of stoichiometric amounts of PabB. In many organisms, including plants, the genes encoding the two proteins have fused to encode a single bifunctional protein. This enzyme is coupled with EC 4.1.3.38, aminodeoxychorismate lyase, to form 4-aminobenzoate. cf. EC 2.6.1.123, 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming).
CAS REGISTRY NUMBER
COMMENTARY hide
132264-37-0
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
chorismate + L-glutamine
4-amino-4-deoxychorismate + L-glutamate
show the reaction diagram
chorismate + L-glutamine
4-amino-4-deoxychorismate + L-glutamate
show the reaction diagram
chorismate + L-glutamine
L-glutamate + 4-amino-4-deoxychorismate
show the reaction diagram
-
-
-
-
?
chorismate + NH4+
4-amino-4-deoxychorismate + H2O + H+
show the reaction diagram
-
-
-
-
?
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
chorismate + L-glutamine
4-amino-4-deoxychorismate + L-glutamate
show the reaction diagram
commited step in PABA biosynthesis
-
?
chorismate + L-glutamine
4-amino-4-deoxychorismate + L-glutamate
show the reaction diagram
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
(5R,6R)-4-ammonio-5-((1-carboxylatovinyl)oxy)-6-hydroxycyclohex-1-ene-1-carboxylate
-
transition-state analogue, competitive
2-fluorochorismate
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irreversible, covalent modification of K274
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
glutamine
-
prevents loss of activity
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.013 - 0.097
chorismate
145 - 169
NH4+
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.000098 - 0.53
chorismate
0.6 - 0.67
L-glutamine
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0007 - 0.0056
(5R,6R)-4-ammonio-5-((1-carboxylatovinyl)oxy)-6-hydroxycyclohex-1-ene-1-carboxylate
0.13
2-fluorochorismate
-
-
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
Uniprot
Manually annotated by BRENDA team
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
20000
-
gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
-
heterodimer of chorismate aminating subunit and glutamine amidotransferase subunit. Mass of glutamine amidotransferase subunit is 50969 Da, as determined by electrospray mass spectrometry
heterodimer
-
PabA-PabB
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion at room temperature
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
K213A
-
subunit PabB, numbering used is based on the EntC protein from Escherichia coli, reduced activity
K213A/Q147K
-
subunit PabB, numbering used is based on the EntC protein from Escherichia coli, strongly reduced activity
K274A
-
265fold reduction of kcat-value
K274A/L277R/D299E/N303H/I306L/F334Y/C391G
mutant displaying anthranilate synthase activity, the kcat/Kchoris value for anthranilate formation is 25% of the wild-type aminodeoxychorismate synthase value for 4-amino-4-deoxychorismate production
K274R
-
640fold reduction of kcat-value
N213V/L214P/K274A/L277R/D299E/N303H/F334Y/P363N/I367L/C391G/G425A
mutant displaying anthranilate synthase activity, is able to produce both 2-amino-2-deoxyisochorismate and anthranilate
N213V/L214P/R259S/K274A/L277R/N303H/F334Y/S366T/C391G/G254A
mutant displaying anthranilate synthase activity, is able to produce both 2-amino-2-deoxyisochorismate and anthranilate
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
37
-
inactivation. DTT, chorismate or PabA prevent inactivation
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-80º, 50 mM MOPS, 50 mM KCl, 0.1 mM EDTA, 2 mM DTT, 5 mM MgCl, pH 7.6
-20º, Tris-HCl buffer, pH 7.4, 50% glycerol
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
chromatography on Poros HQ50, HS20 cation exchange chromatography and chromatography on hydroxyapatite
protamine sulfate precipitation, ammonium sulfate fractionation, chromatography on Sephacryl S-200, chromatography on DEAE-Sephacel and chromatography on dye-agarose
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streptomycin sulfate precipitation, ammonium sulfate fractionation, chromatography on DEAE-cellulose
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression with His-tag
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
biotechnology
conversion of aminodeoxychorismate synthase into anthranilate synthase employing a bioinformatics method for predicting mutations required to functionally interconvert homologous enzymes. Complementation of an anthranilate synthase-deficient strain of Escherichia coli grown on minimal medium leads to several aminodeoxychorismate synthase mutants that allow growth in 6 days compared to 2 days for wild-type anthranilate synthase. The purified mutant enzymes catalyze the conversion of chorismate to anthranilate at rates that are about 50% of the rate of wild-type aminodeoxychorismate synthase-catalyzed conversion of chorismate to aminodeoxychorismate. The residues mutated do not contact the substrate
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Ye, Q.Z.; Liu, J.; Walsh, C.T.
p-Aminobenzoate synthesis in Escherichia coli: purification and characterization of PabB as aminodeoxychorismate synthase and enzyme X as aminodeoxychorismate lyase
Proc. Natl. Acad. Sci. USA
87
9391-9395
1990
Escherichia coli
Manually annotated by BRENDA team
Viswanathan, V.K.; Green, J.M.; Nicholas, B.P.
Kinetic characterization of 4-amino 4-deoxychorismate synthase from Escherichia coli
J. Bacteriol.
177
5918-5923
1995
Escherichia coli
Manually annotated by BRENDA team
Rayl, E.A.; Green, J.M.; Nichols, B.P.
Escherichia coli aminodeoxychorismate synthase: analysis of pabB mutations affecting catalysis and subunit association
Biochim. Biophys. Acta
1295
81-88
1996
Escherichia coli
Manually annotated by BRENDA team
Parsons, J.F.; Jensen, P.Y.; Pachikara, A.S.; Howard, A.J.; Eisenstein, E.; Ladner, J.E.
Structure of Escherichia coli Aminodeoxychorismate Synthase: architectural conservation and diversity in chorismate-utilizing enzymes
Biochemistry
41
2198-2208
2002
Escherichia coli (P05041), Escherichia coli
Manually annotated by BRENDA team
He, Z.; Stigers Lavoie, K.D.; Bartlett, P.A.; Toney, M.D.
Conservation of mechanism in three chorismate-utilizing enzymes
J. Am. Chem. Soc.
126
2378-2385
2004
Escherichia coli
Manually annotated by BRENDA team
Bulloch, E.M.M.; Jones, M.A.; Parker, E.J.; Osborne, A.P.; Stephens, E.; Davies, G.M.; Coggins, J.R.; Abell, C.
Identification of 4-amino-4-deoxychorismate synthase as the molecular target for the antimicrobial action of (6S)-6-fluoroshikimate
J. Am. Chem. Soc.
126
9912-9913
2004
Escherichia coli
Manually annotated by BRENDA team
Ziebart, K.T.; Toney, M.D.
Nucleophile specificity in anthranilate synthase, aminodeoxychorismate synthase, isochorismate synthase, and salicylate synthase
Biochemistry
49
2851-2859
2010
Escherichia coli
Manually annotated by BRENDA team
Culbertson, J.E.; Chung, D.h.; Ziebart, K.T.; Espiritu, E.; Toney, M.D.
Conversion of aminodeoxychorismate synthase into anthranilate synthase with Janus mutations: mechanism of pyruvate elimination catalyzed by chorismate enzymes
Biochemistry
54
2372-2384
2015
Escherichia coli (P00903), Escherichia coli
Manually annotated by BRENDA team