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Information on EC 2.4.2.28 - S-methyl-5'-thioadenosine phosphorylase and Organism(s) Saccharolobus solfataricus and UniProt Accession Q97W94

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EC Tree
     2 Transferases
         2.4 Glycosyltransferases
             2.4.2 Pentosyltransferases
                2.4.2.28 S-methyl-5'-thioadenosine phosphorylase
IUBMB Comments
Also acts on 5'-deoxyadenosine and other analogues having 5'-deoxy groups.
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This record set is specific for:
Saccharolobus solfataricus
UNIPROT: Q97W94
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Word Map
The taxonomic range for the selected organisms is: Saccharolobus solfataricus
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
methylthioadenosine phosphorylase, 5'-methylthioadenosine phosphorylase, mta phosphorylase, mtap protein, 5'-deoxy-5'-methylthioadenosine phosphorylase, ssmtapii, ssmtap, mtapase, mesado phosphorylase, pfmtap, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5'-deoxy-5'-methylthioadenosine phosphorylase II
-
5'-deoxy-5'-methylthioadenosine phosphorylase
5'-deoxy-5'-methylthioadenosine phosphorylase II
-
-
5'-methylthioadenosine nucleosidase
-
-
-
-
5'-methylthioadenosine phosphorylase
5’-methylthioadenosine phosphorylase
-
MeSAdo phosphorylase
-
-
-
-
MeSAdo/Ado phosphorylase
-
-
-
-
methylthioadenosine nucleoside phosphorylase
-
-
-
-
methylthioadenosine phosphorylase
-
-
-
-
MTA phosphorylase
MTAPase
-
-
-
-
phosphorylase, methylthioadenosine
-
-
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
S-methyl-5'-thioadenosine + phosphate = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pentosyl group transfer
-
-
-
-
PATHWAY SOURCE
PATHWAYS
-
-, -
SYSTEMATIC NAME
IUBMB Comments
S-methyl-5'-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase
Also acts on 5'-deoxyadenosine and other analogues having 5'-deoxy groups.
CAS REGISTRY NUMBER
COMMENTARY hide
61970-06-7
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
5'-deoxy-5'-methylthioadenosine + phosphate
adenine + 5-methylthio-D-ribose 1-phosphate
show the reaction diagram
-
-
-
?
5'-deoxy-5'-methylthioadenosine + phosphate
adenine + 5-methylthio-D-ribose 1-phosphate
show the reaction diagram
5'-methylthioadenosine + phosphate
adenine + 5-methylthio-D-ribose 1-phosphate
show the reaction diagram
adenosine + phosphate
adenine + D-ribose 1-phosphate
show the reaction diagram
guanosine + phosphate
guanine + D-ribose 1-phosphate
show the reaction diagram
inosine + phosphate
hypoxanthine + D-ribose 1-phosphate
show the reaction diagram
S-methyl-5'-thioadenosine + phosphate
adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
5'-methylthioadenosine + phosphate
adenine + 5-methylthio-D-ribose 1-phosphate
show the reaction diagram
-
-
-
?
adenosine + phosphate
adenine + D-ribose 1-phosphate
show the reaction diagram
-
-
-
?
guanosine + phosphate
guanine + D-ribose 1-phosphate
show the reaction diagram
-
-
-
?
inosine + phosphate
hypoxanthine + D-ribose 1-phosphate
show the reaction diagram
-
-
-
?
additional information
?
-
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
guanidine hydrochloride
only recombinant enzyme
iodoacetamide
only recombinant enzyme
iodoacetate
proteinase K
-
recombinant enzyme, 10% remaining activity after 4 h at 37°C, phosphate protects
-
S-adenosyl-L-homocysteine
no inhibition
Subtilisin
-
recombinant enzyme, 24% remaining activity after 4 h at 37°C, phosphate protects
-
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.024 - 0.154
5'-methylthioadenosine
0.0254
adenosine
-
pH 7.4, 70°C
0.1136
guanosine
-
pH 7.4, 70°C
0.084
Inosine
-
pH 7.4, 70°C
0.123 - 0.125
phosphate
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
21.4
5'-methylthioadenosine
-
pH 7.4, 70°C
43.6
adenosine
-
pH 7.4, 70°C
29.6
guanosine
-
pH 7.4, 70°C
132
Inosine
-
pH 7.4, 70°C
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4.86
70°C, pH 7.4, mutant enzyme C259S/C261S/C262S/C200S/C205S
4.97
70°C, pH 7.4, mutant enzyme C262S
5.09
70°C, pH 7.4, mutant enzyme C259S/C261S
5.28
70°C, pH 7.4, mutant enzyme C259S/C261S/C262S/C200S/C205S/C138S/C164S
5.68
70°C, pH 7.4, mutant enzyme C259S/C261S/C262S
6.24
70°C, pH 7.4, mutant enzyme C259S/C261S/C262S/C200S/C205S/C138S
6.27
70°C, pH 7.4, wild-type enzyme
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
107
mutant enzyme C259S/C261S/C262S/C200S/C205S/C164S
112
mutant enzyme C259S/C261S/C262S/C200S/C205S
114
mutant enzyme C259S/C261S/C262S/C200S/C205S and mutant enzyme C259S/C261S/C262S
115
mutant enzyme C259S/C261S and mutant enzyme C259S
100
recombinant enzyme
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
30 - 120
recombinant enzyme
60 - 120
60°C: about 40% of maximal activity, 120°C: about 40% of maximal activity, recombinant enzyme
90 - 130
90°C: about 50% of maximal activity, 130°C: about 70% of maximal activity
95 - 140
-
95°C: about 50% of maximal activity, 140°C: about 45% of maximal activity, wild-type enzyme
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.7
isoelectric focusing on polyacrylamide gel in the pH ranges 3-10 and 4.5-6.0
6.54
-
calculation from nucleotide sequence
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
160000
180000
-
gel filtration
26000
x * 26000, calculated from sequence
27000
30000
-
6 * 30000, SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hexamer
?
x * 26000, calculated from sequence
hexamer
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
analysis of the crystal packing. Space group is C2, unit-cell parameters are a = 135.16, b = 138.09, c = 96.56 A, beta = 92.21°. The asymmetric unit contains two independent half-hexamers, the other half of each of which is generated by a crystallographic twofold axis
hanging-drop, vapor-diffusion method at 22°C, the crystal structure of the enzyme in complex with 5'-deoxy-5'-methylthioadenosine and sulfate is determined to 1.45 A resolution
the structure of SsMTAP II is originally determined in space group P1 and shows R32 pseudosymmetry. Post-analysis using phenix.xtriage shows that the correct space group is C2. The structure refined in space group C2 is reported and the factors that initially led to the incorrect space-group assignment are discussed
crystals are grown at either room temperature or 18°C using the hanging drop vapor diffusion technique. Determination of the structure of 5'-deoxy-5'-methylthioadenosine phosphorylase alone, as ternary complexes with sulfate plus substrates 5'-deoxy-5'-methylthioadenosine, adenosine, or guanosine, or with the noncleavable substrate analog formycin B and as binary complexes with phosphate or sulfate alone. The structure of unliganded SsMTAP is refined at 2.5 A resolution and the structures of the complexes are refined at resolutions ranging from 1.6 A to 2.0 A
from recombinant enzyme, hanging drop-vapour diffusion method, protein solution, 7-10 mg/ml, 18°C, reservoir solution for native crystals: Tris-HCl 10 mM, pH 7.4, 28-30% dioxane, 12% 2-methyl-2,4-pentanediol, 0.12 M MgCl2, 0,04 M NaCl, for crystals of enzyme complexed with substrates or sulfate and phosphate ions, substrates are added and NaCl is exchanged for MgSO4 or NH4Cl and KH2PO4, respectively, X-ray structure determination and analysis
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
C259S/C261S
mutation significantly reduces the optimal temperature for the catalytic activity. Strong destabilization for the folded structure of the enzyme, as inferred from the temperature for half inactivation, which decreases from 112°C (wild-type) to 102°C. Specific activity is similar to the activity of the wild-type enzyme
C259S/C261S/C262S
mutation significantly reduces the optimal temperature for the catalytic activity. Strong destabilization for the folded structure of the enzyme, as inferred from the temperature for half inactivation, which decreases from 112°C (wild-type) to 91°C. Specific activity is similar to the activity of the wild-type enzyme
C259S/C261S/C262S/C200S/C205S
mutation significantly reduces the optimal temperature for the catalytic activity. Strong destabilization for the folded structure of the enzyme, as inferred from the temperature for half inactivation, which decreases from 112°C (wild-type) to 73°C. Specific activity is similar to the activity of the wild-type enzyme
C259S/C261S/C262S/C200S/C205S/C138S
mutation significantly reduces the optimal temperature for the catalytic activity. Strong destabilization for the folded structure of the enzyme, as inferred from the temperature for half inactivation, which decreases from 112°C (wild-type) to 78°C. Specific activity is similar to the activity of the wild-type enzyme
C259S/C261S/C262S/C200S/C205S/C138S/C164S
mutation significantly reduces the optimal temperature for the catalytic activity. Strong destabilization for the folded structure of the enzyme, as inferred from the temperature for half inactivation, which decreases from 112°C (wild-type) to 73°C. Specific activity is similar to the activity of the wild-type enzyme
C262S
mutation significantly reduces the optimal temperature for the catalytic activity. Strong destabilization for the folded structure of the enzyme, as inferred from the temperature for half inactivation, which decreases from 112°C (wild-type) to 106°C. Specific activity is similar to the activity of the wild-type enzyme
C259S/C261S
C262S
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
102
5 min, 50% residual activity, mutant enzyme C259S/C261S
106
5 min, 50% residual activity, mutant enzyme C262S
112
5 min, 50% residual activity, wild-type enzyme
73
5 min, 50% residual activity, mutant enzyme C259S/C261S/C262S/C200S/C205S and mutant enzyme C259S/C261S/C262S/C200S/C205S/C138S/C164S
78
5 min, 50% residual activity, mutant enzyme C259S/C261S/C262S/C200S/C205S/C138S
91
5 min, 50% residual activity, mutant enzyme C259S/C261S/C262S
102
-
apparent Tm, mutant enzyme C259S/C261S
106
-
apparent Tm, mutant enzyme C262S
112
-
apparent Tm, wild-type enzyme
118
recombinant enzyme in presence of 100 mM phosphate, melting temperature
70
recombinant enzyme, 0.8 M DTT, stable
additional information
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
elimination of the disulfide bond Cys138–Cys205 leads to an increased protease susceptibility
after 40 min exposure to 10.4 GHz microwave radiation at 90°C the enzyme retains 78% activity compared to a control incubated at the same temperature without irradiation. KCl or NaCl increases the susceptibility to microwave irradiation. Protection against microwave inactivation by phosphate or sulfate.
-
no loss of activity after 24 h at room temperature in presence of 9 M urea, 4 M guanidine hydrochloride, 0.075% SDS, 50% methanol, 50% ethanol, 50% dimethylformamide, 1 M NaCl, and 1% Triton X-100
no loss of activity after treatment with thermolysin, trypsin, and chymotrypsin for 24 h at 37°C
phosphate, and less efficiently also arsenate and sulfate, stabilize the recombinant enzyme against inactiviation by temperature, SDS, urea, and proteolytic enzymes
-
recombinant enzyme, 90°C in 2% SDS, 30 min, loss of 60% activity
-
recombinant enzyme, 90°C in 8 M urea, 30 min, loss of 70% activity
-
ORGANIC SOLVENT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
1-propanol
no loss of activity after 24 h at room temperature in presence of 50% methanol, loss of 90% activity at 90°C after 1 h
acetonitrile
loss of 89% activity at 70°C after 1 h
dimethylformamide
no loss of activity after 24 h at room temperature in presence of 50% dimethylformamide, loss of 21% activity at 90°C after 1 h
Ethanol
guanidine-HCl
4 M, 24 h at room temperature, no loss of activity
Methanol
N,N-dimethylformamide
50%, 24 h at room temperature, no loss of activity
SDS
0.075%, 24 h at room temperature, no loss of activity. After 60 min of incubation in 2% SDS the enzyme remains fully active at 70°C and retains 20% residual activity at 90°C. Complete inactivation after 5 min at 100°C in 0.5% SDS
tetrahydrofuran
loss of 76% activity at 70°C after 30 min, complete loss of activity after 1 h at 70°C
Triton X-100
9 M, 24 h at room temperature, no loss of activity
urea
9 M, 24 h at room temperature, no loss of activity
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-20°C, 10 mM Tris-HC1, pH 7.4, containing 1 mM EDTA, stable for at least 1 year
-20°C, purified enzyme, Tris-HCl 10 mM, pH 7.4, 1 mM EDTA, stable at least 1 year
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant from Escherichia coli
using heat-treatment and MTA-Sepharose chromatography
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression at a high level in Escherichia coli
expression in Escherichichia coli
overexpression in Escherichia coli BL21
-
overexpression in Escherichia coli strain RB791, amino acid determination, incorrect positioning of disulfide bonds, the recombinant enzyme is less thermostable and thermophilic than the native enzyme
recombinant SsMTAPII and its C262S and C259S/C261S mutant forms are expressed in Escherichia coli BL21 (lDE3) cells
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Cacciapuoti, G.; Porcelli, M.; Bertoldo, C.; Zappia, V.
Thermophilicity and thermostability of 5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus
Life Chem. Rep.
10
75-81
1992
Saccharolobus solfataricus
-
Manually annotated by BRENDA team
Cacciapuoti, G.; Porcelli, M.; Bertoldo, C.; De Rosa, M.; Zappia, V.
Purification and characterization of extremely thermophilic and thermostable 5'-methylthioadenosine phosphorylase from the archaeon Sulfolobus solfataricus. Purine nucleoside phosphorylase activity and evidence for intersubunit disulfide bonds
J. Biol. Chem.
269
24762-24769
1994
Saccharolobus solfataricus, Saccharolobus solfataricus (P50389)
Manually annotated by BRENDA team
Cacciapuoti, G.; Fusco, S.; Caiazzo, N.; Zappia, V.; Porcelli, M.
Heterologous expression of 5'-methylthioadenosine phosphorylase from the archaeon Sulfolobus solfataricus: characterization of the recombinant protein and involvement of disulfide bonds in thermophilicity and thermostability
Protein Expr. Purif.
16
125-135
1999
Saccharolobus solfataricus, Saccharolobus solfataricus (P50389)
Manually annotated by BRENDA team
Cacciapuoti, G.; Servillo, L.; Moretti, M.A.; Porcelli, M.
Conformational changes and stabilization induced by phosphate binding to 5'-methylthioadenosine phosphorylase from the thermophilic archaeon Sulfolobus solfataricus
Extremophiles
5
295-302
2001
Saccharolobus solfataricus
Manually annotated by BRENDA team
Appleby, T.C.; Mathews, I.I.; Porcelli, M.; Cacciapuoti, G.; Ealick, S.E.
Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus
J. Biol. Chem.
276
39232-39242
2001
Saccharolobus solfataricus, Saccharolobus solfataricus (P50389)
Manually annotated by BRENDA team
Cacciapuoti, G.; Forte, S.; Moretti, M.A.; Brio, A.; Zappia, V.; Porcelli, M.
A novel hyperthermostable 5'-deoxy-5'-methylthioadenosine phosphorylase from the archaeon Sulfolobus solfataricus
FEBS J.
272
1886-1899
2005
Saccharolobus solfataricus
Manually annotated by BRENDA team
Cacciapuoti, G.; Porcelli, M.; Bertoldo, C.; Fusco, S.; De Rosa, M.; Zappia, V.
Extremely thermophilic and thermostable 5'-methylthioadenosine phosphorylase from the archaeon Sulfolobus solfataricus. Gene cloning and amino acid sequence determination.
Eur. J. Biochem.
239
632-637
1996
Saccharolobus solfataricus (P50389), Saccharolobus solfataricus
Manually annotated by BRENDA team
Zhang, Y.; Porcelli, M.; Cacciapuoti, G.; Ealick, S.E.
The crystal structure of 5-deoxy-5-methylthioadenosine phosphorylase II from Sulfolobus solfataricus, a thermophilic enzyme stabilized by intramolecular disulfide bonds
J. Mol. Biol.
357
252-262
2006
Saccharolobus solfataricus (Q97W94), Saccharolobus solfataricus
Manually annotated by BRENDA team
Zhang, Y.; Zwart, P.H.; Ealick, S.E.
A corrected space group for Sulfolobus sulfataricus 5'-deoxy-5'-methylthioadenosine phosphorylase II
Acta Crystallogr. Sect. D
68
249-252
2012
Saccharolobus solfataricus (Q97W94), Saccharolobus solfataricus P2 (Q97W94)
Manually annotated by BRENDA team
Cacciapuoti, G.; Fuccio, F.; Petraccone, L.; Del Vecchio, P.; Porcelli, M.
Role of disulfide bonds in conformational stability and folding of 5-deoxy-5-methylthioadenosine phosphorylase II from the hyperthermophilic archaeon Sulfolobus solfataricus
Biochim. Biophys. Acta
1824
1136-1143
2012
Saccharolobus solfataricus
Manually annotated by BRENDA team
Porcelli, M.; Cacciapuoti, G.; Fusco, S.; Massa, R.; d'Ambrosio, G.; Bertoldo, C.; De Rosa, M.; Zappia, V.
Non-thermal effects of microwaves on proteins: thermophilic enzymes as model system
FEBS Lett.
402
102-106
1997
Saccharolobus solfataricus
Manually annotated by BRENDA team
Bagarolo, M.L.; Porcelli, M.; Martino, E.; Feller, G.; Cacciapuoti, G.
Multiple disulfide bridges modulate conformational stability and flexibility in hyperthermophilic archaeal purine nucleoside phosphorylase
Biochim. Biophys. Acta
1854
1458-1465
2015
Saccharolobus solfataricus (Q97W94), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W94)
Manually annotated by BRENDA team