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Information on EC 1.8.1.5 - 2-oxopropyl-CoM reductase (carboxylating) Word Map on EC 1.8.1.5
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The expected taxonomic range for this enzyme is: Xanthobacter
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2-oxopropyl-CoM reductase (carboxylating)
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2-mercaptoethanesulfonate + acetoacetate + NADP+ = 2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
2-mercaptoethanesulfonate + acetoacetate + NADP+ = 2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
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2-mercaptoethanesulfonate + acetoacetate + NADP+ = 2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
detailed reaction mechanism in a catalytic cycle, active site structure
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ethene and chloroethene degradation
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2-mercaptoethanesulfonate,acetoacetate:NADP+ oxidoreductase (decarboxylating)
Also acts on thioethers longer in chain length on the oxo side, e.g. 2-oxobutyl-CoM, but this portion must be attached to CoM (2-mercaptoethanesulfonate); no CoM analogs will substitute. This enzyme forms component II of a four-component enzyme system {comprising EC 4.4.1.23 (2-hydroxypropyl-CoM lyase; component I), EC 1.8.1.5 [2-oxopropyl-CoM reductase (carboxylating); component II], EC 1.1.1.268 [2-(R)-hydroxypropyl-CoM dehydrogenase; component III] and EC 1.1.1.269 [2-(S)-hydroxypropyl-CoM dehydrogenase; component IV]} that is involved in epoxyalkane carboxylation in Xanthobacter sp. strain Py2.
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2-ketopropyl-coenzyme M oxidoreductase/carboxylase
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NADPH:2-(2-ketopropylthio)ethanesulfonate oxidoreductase/carboxylase
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NADPH:2-ketopropyl-coenzyme M carboxylase/oxidoreductase
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NADPH:2-ketopropyl-coenzyme M oxidoreductase/carboxylase
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NADPH:2-ketopropyl-CoM oxidoreductase/carboxylase
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additional information
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enzyme belongs to the disulfide oxidoreductase family of enzymes DSOR
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Py2
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brenda
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brenda
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Uniprot
brenda
strain Py2
Uniprot
brenda
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brenda
Py2
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brenda
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + NADPH + H+
acetone + 2-mercaptoethanesulfonate + NADP+
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
3-mercaptopropanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
3-mercaptopropionate + acetoacetate + NADP+
3-(2-oxopropylthio)propionate + CO2 + NADPH + H+
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poor cofactor, 11% of activity
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acetoacetate + H+
acetone + CO2
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very low rate
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CO2 + acetoacetate
acetoacetate + CO2
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exchange of C-14 without added cofactors
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?
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
2-mercaptoethanesulfonate + acetoacetate + NADP+
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
2-mercaptoethanesulfonate + acetoacetate + NADP+
terminal enzyme in the metabolic pathway converting propylene to acetoacetate
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r
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
2-mercaptoethanesulfonate + acetoacetate + NADP+
i.e. 2-ketopropyl-CoM, comparison of enzyme structure with and without bound substrate, binding of 2-ketopropyl-coenzyme M induces a conformational change resulting in collapse of the substrate access channel, substrate binding site structure analysis
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
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r
2-(2-oxopropylthio)ethanesulfonate + NADPH + H+
acetone + 2-mercaptoethanesulfonate + NADP+
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ir
2-(2-oxopropylthio)ethanesulfonate + NADPH + H+
acetone + 2-mercaptoethanesulfonate + NADP+
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ir
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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dual function enzyme, reverse reaction of component II of carboxylation pathway
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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dual function enzyme, reverse reaction of component II of carboxylation pathway
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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3-mercaptopropanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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very poor cofactor, 1% of activity
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3-mercaptopropanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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very poor cofactor, 1% of activity
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2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH
2-mercaptoethanesulfonate + acetoacetate + NADP+
Q56839
terminal enzyme in the metabolic pathway converting propylene to acetoacetate
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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r
2-mercaptoethanesulfonate + acetoacetate + NADP+
2-(2-oxopropylthio)ethanesulfonate + CO2 + NADPH + H+
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involved in epoxide carboxylation pathway in bacteria, reverse reaction more important
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r
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2-mercaptoethanesulfonic acid
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coenzyme M
NADP+
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binding domain structure analysis
FAD
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enzyme bound
FAD
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binding domain structure analysis
NADPH
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binding domain structure analysis
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2-bromoethanesulfonate
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reversible inhibitor, time-dependent inactivator of dithiothreitol-reduced 2-ketopropyl-CoM carboxylase/oxidoreductase, where the redox active cysteines are in the free thiol forms, does not inactivate air-oxidized 2-ketopropyl-CoM carboxylase/oxidoreductase, where the redox active cysteine pair is in the disulfide form. Inactivation leads to covalent modification of the interchange thiol residue C82. The flavin thiol Cys87 is not alkylated by 2-bromoethanesulfonate under reducing conditions, and no amino acid residues are modified by 2-bromoethanesulfonate in the oxidized enzyme
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0.42 - 6.37
2-(2-oxopropylthio)ethanesulfonate
0.42
2-(2-oxopropylthio)ethanesulfonate
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wild-type, pH 7.4, 30°C
6.37
2-(2-oxopropylthio)ethanesulfonate
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mutant M140A, pH 7.4, 30°C
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0.072 - 0.22
2-(2-oxopropylthio)ethanesulfonate
0.263
acetoacetate
Xanthobacter sp.
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0.072
2-(2-oxopropylthio)ethanesulfonate
Xanthobacter autotrophicus
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mutant M140A, pH 7.4, 30°C
0.22
2-(2-oxopropylthio)ethanesulfonate
Xanthobacter autotrophicus
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wild-type, pH 7.4, 30°C
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0.011 - 0.53
2-(2-oxopropylthio)ethanesulfonate
7430
0.011
2-(2-oxopropylthio)ethanesulfonate
Xanthobacter autotrophicus
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mutant M140A, pH 7.4, 30°C
7430
0.53
2-(2-oxopropylthio)ethanesulfonate
Xanthobacter autotrophicus
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wild-type, pH 7.4, 30°C
7430
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0.0041
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rate of decarboxylation without added cofactors
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Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
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57000
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molecular weight of subunits
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dimer
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crystal structure
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enzyme free or bound to substrate 2-ketopropyl-CoM, X-ray structure determination and analysis at 1.6-3.5 A resolution, multiple isomorphous replacement and anomalous scattering using four weak heavy atom derivatives
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hanging drop vapour diffusion method
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in complex with acetoacetate and 2-mercaptoethanesulfonate. In the substrate encapsulated state of the enzyme, CO2 is bound at the base of a narrow hydrophobic substrate access channel. The base of the channel is demarcated by a transition from a hydrophobic to hydrophilic environment where CO2 is located in position for attack on the carbanion of the ketopropyl group of the substrate to ultimately produce acetoacetate. This binding mode effectively discriminates against H2O and prevents protonation of the ketopropyl leaving group
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C82A
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mutagenesis of the interchange thiol, abolishes all redox-dependent reactions. Redox-independent acetoacetate decarboxylation is not decreased
C87A
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mutagenesis of the flavin thiol, results in an inactive enzyme for steady-state redox-dependent reactions, but this variant catalyzes a single-turnover reaction producing a 0.8:1 ratio of product to enzyme. Redox-independent acetoacetate decarboxylation is not decreased
H137A
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mutagenesis of the histidine proximal to the ordered water molecule, leads to nearly complete loss of redox-dependent reactions. Redox-independent acetoacetate decarboxylation is not decreased
H84A
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mutagenesis of the distal histidine residue, reduces the redox-dependent activities by 58 to 76%. Redox-independent acetoacetate decarboxylation is not decreased
M140A
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residue flanking the substrate, catalytic efficiency for 2-(2-oxopropylthio)ethanesulfonate carboxylation is 47fold lower than that for wild-type
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XECC_XANP2
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
523
57348
Swiss-Prot
V5DY58_9GAMM
517
57369
TrEMBL
A7IQH7_XANP2
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
130
14381
TrEMBL
G4I7X5_MYCRH
521
58667
TrEMBL
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Allen, J.R.; Clark, D.D.; Krum, J.G.; Ensign, S.A.
A role for coenzyme M (2-mercaptoethanesulfonic acid) in a bacterial pathway of aliphatic epoxide carboxylation
Proc. Natl. Acad. Sci. USA
96
8432-8437
1999
Xanthobacter sp., Xanthobacter sp. Py2
brenda
Clark, D.D.; Allen, J.R.; Ensign, S.A.
Characterization of five catalytic activities associated with the NADPH:2-ketopropyl-coenzyme M [2-(2-ketopropylthio)ethanesulfonate] oxidoreductase/carboxylase of the Xanthobacter strain Py2 epoxide carboxylase system
Biochemistry
39
1294-1304
2000
Xanthobacter sp., Xanthobacter sp. Py2
brenda
Jang, S.B.; Jeong, M.S.; Clark, D.D.; Ensign, S.A.; Peters, J.W.
Crystallization and preliminary X-ray analysis of a NADPH 2-ketopropyl-coenzyme M oxidoreductase/carboxylase
Acta Crystallogr. Sect. D
57
445-447
2001
Xanthobacter sp.
brenda
Nocek, B.; Jang, S.B.; Jeong, M.S.; Clark, D.D.; Ensign, S.A.; Peters, J.W.
Structural basis for CO2 fixation by a novel member of the disulfide oxidoreductase family of enzymes, 2-ketopropyl-coenzyme M oxidoreductase/carboxylase
Biochemistry
41
12907-12913
2002
Xanthobacter autotrophicus (Q56839)
brenda
Pandey, A.S.; Nocek, B.; Clark, D.D.; Ensign, S.A.; Peters, J.W.
Mechanistic implications of the structure of the mixed-disulfide intermediate of the disulfide oxidoreductase, 2-ketopropyl-coenzyme M oxidoreductase/carboxylase
Biochemistry
45
113-120
2006
Xanthobacter autotrophicus (Q56839)
brenda
Boyd, J.M.; Clark, D.D.; Kofoed, M.A.; Ensign, S.A.
Mechanism of inhibition of aliphatic epoxide carboxylation by the coenzyme M analog 2-bromoethanesulfonate
J. Biol. Chem.
285
25232-25242
2010
Xanthobacter autotrophicus
brenda
Pandey, A.S.; Mulder, D.W.; Ensign, S.A.; Peters, J.W.
Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M oxidoreductase/carboxylase
FEBS Lett.
585
459-464
2011
Xanthobacter autotrophicus (Q56839)
brenda
Kofoed, M.A.; Wampler, D.A.; Pandey, A.S.; Peters, J.W.; Ensign, S.A.
Roles of the redox-active disulfide and histidine residues forming a catalytic dyad in reactions catalyzed by 2-ketopropyl coenzyme M oxidoreductase/carboxylase
J. Bacteriol.
193
4904-4913
2011
Xanthobacter autotrophicus (Q56839)
brenda
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