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Information on EC 1.8.1.4 - dihydrolipoyl dehydrogenase and Organism(s) Homo sapiens and UniProt Accession P09622

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EC Tree
IUBMB Comments
A flavoprotein (FAD). A component of the multienzyme 2-oxo-acid dehydrogenase complexes. In the pyruvate dehydrogenase complex, it binds to the core of EC 2.3.1.12, dihydrolipoyllysine-residue acetyltransferase, and catalyses oxidation of its dihydrolipoyl groups. It plays a similar role in the oxoglutarate and 3-methyl-2-oxobutanoate dehydrogenase complexes. Another substrate is the dihydrolipoyl group in the H-protein of the glycine-cleavage system ({AminoAcid/GlyCleave} for diagram), in which it acts, together with EC 1.4.4.2, glycine dehydrogenase (decarboxylating), and EC 2.1.2.10, aminomethyltransferase, to break down glycine. It can also use free dihydrolipoate, dihydrolipoamide or dihydrolipoyllysine as substrate. This enzyme was first shown to catalyse the oxidation of NADH by methylene blue; this activity was called diaphorase. The glycine cleavage system is composed of four components that only loosely associate: the P protein (EC 1.4.4.2), the T protein (EC 2.1.2.10), the L protein (EC 1.8.1.4) and the lipoyl-bearing H protein .
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Homo sapiens
UNIPROT: P09622
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Word Map
The taxonomic range for the selected organisms is: Homo sapiens
The enzyme appears in selected viruses and cellular organisms
Synonyms
lipoamide dehydrogenase, dihydrolipoamide dehydrogenase, dldh, l-protein, dihydrolipoyl dehydrogenase, nadh diaphorase, e3 component, lipdh, nicotinamide adenine dinucleotide diaphorase, lipoyl dehydrogenase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dihydrolipoamide dehydrogenase E3
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dihydrolipoamide:NAD+ oxidoreductase
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dihydrolipomide dehydrogenase
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E3 subunit of the alpha-ketoglutarate dehydrogenase complex
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dehydrogenase, lipoamide
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-
-
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dehydrolipoate dehydrogenase
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-
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DHLDH
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-
-
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diaphorase
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-
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dihydrolipoamide dehydrogenase E3
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common component of the three 2-oxoacid dehydrogenase complexes oxidizing pyruvate, 2-oxoglutarate, and the branched-chain 2-oxo acids
dihydrolipoamide:NAD+ oxidoreductase
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dihydrolipoic dehydrogenase
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-
-
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dihydrolipoyl dehydrogenase
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-
-
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E3 component
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E3 component of 2-oxoglutarate dehydrogenase complex
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-
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E3 component of acetoin cleaving system
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-
-
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E3 component of alpha keto acid dehydrogenase complexes
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-
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E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes
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E3 component of pyruvate complex
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E3 lipoamide dehydrogenase
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Glycine cleavage system L protein
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Glycine oxidation system L-factor
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-
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LDP-Glc
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-
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LDP-Val
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-
-
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lipoamide dehydrogenase (NADH)
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-
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lipoamide oxidoreductase (NADH)
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lipoamide reductase
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lipoate dehydrogenase
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lipoic acid dehydrogenase
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lipoyl dehydrogenase
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LPD
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LPD-GLC
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LPD-VAL
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NADH:lipoamide oxidoreductase
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ORF-E3
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additional information
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+
show the reaction diagram
protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+
show the reaction diagram
Asp473 is important for efficient catalytic function of the enzyme
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oxidation
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reduction
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redox reaction
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oxidation
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reduction
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SYSTEMATIC NAME
IUBMB Comments
protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase
A flavoprotein (FAD). A component of the multienzyme 2-oxo-acid dehydrogenase complexes. In the pyruvate dehydrogenase complex, it binds to the core of EC 2.3.1.12, dihydrolipoyllysine-residue acetyltransferase, and catalyses oxidation of its dihydrolipoyl groups. It plays a similar role in the oxoglutarate and 3-methyl-2-oxobutanoate dehydrogenase complexes. Another substrate is the dihydrolipoyl group in the H-protein of the glycine-cleavage system ({AminoAcid/GlyCleave} for diagram), in which it acts, together with EC 1.4.4.2, glycine dehydrogenase (decarboxylating), and EC 2.1.2.10, aminomethyltransferase, to break down glycine. It can also use free dihydrolipoate, dihydrolipoamide or dihydrolipoyllysine as substrate. This enzyme was first shown to catalyse the oxidation of NADH by methylene blue; this activity was called diaphorase. The glycine cleavage system is composed of four components that only loosely associate: the P protein (EC 1.4.4.2), the T protein (EC 2.1.2.10), the L protein (EC 1.8.1.4) and the lipoyl-bearing H protein [6].
CAS REGISTRY NUMBER
COMMENTARY hide
9001-18-7
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
dihydrolipoamide + NAD+
lipoamide + NADH
show the reaction diagram
-
-
-
r
dihydrolipoamide + NAD+
lipoamide + NADH + H+
show the reaction diagram
dihydrolipoic acid + NAD+
lipoic acid + NADH + H+
show the reaction diagram
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-
-
?
lipoamide + NADH
dihydrolipoamide + NAD+
show the reaction diagram
-
-
-
r
lipoamide + NADH + H+
dihydrolipoamide + NAD+
show the reaction diagram
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-
-
?
lipoic acid + NADH
dihydrolipoic acid + NAD+
show the reaction diagram
-
-
-
r
protein N6-(lipoyl)lysine + NADH + H+
protein N6-(dihydrolipoyl)lysine + NAD+
show the reaction diagram
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-
-
r
dihydrolipoamide + NAD+
lipoamide + NADH
show the reaction diagram
dihydrolipoamide + NAD+
lipoamide + NADH + H+
show the reaction diagram
lipoamide + NADH
dihydrolipoamide + NAD+
show the reaction diagram
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-
-
-
?
mature frataxin + NADH
denoted frataxin + NAD+
show the reaction diagram
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cleavage by C-term DLD
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-
?
protein N6-(dihydrolipoyl)lysine + NAD+
protein N6-(lipoyl)lysine + NADH + H+
show the reaction diagram
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-
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-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
dihydrolipoamide + NAD+
lipoamide + NADH + H+
show the reaction diagram
protein N6-(lipoyl)lysine + NADH + H+
protein N6-(dihydrolipoyl)lysine + NAD+
show the reaction diagram
-
-
-
r
dihydrolipoamide + NAD+
lipoamide + NADH
show the reaction diagram
-
-
-
-
?
dihydrolipoamide + NAD+
lipoamide + NADH + H+
show the reaction diagram
-
-
-
-
r
protein N6-(dihydrolipoyl)lysine + NAD+
protein N6-(lipoyl)lysine + NADH + H+
show the reaction diagram
-
-
-
-
?
additional information
?
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COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
flavin
dependent on
flavin
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flavoprotein
NADH
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INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
5-methoxyindole-2-carboxylic acid
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diisopropyl fluorophosphate
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fully inhibits activity of the C-term protein
additional information
Nutlin-3 inhibits mitochondrial activity
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KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.027 - 1.21
dihydrolipoamide
0.05 - 0.56
Lipoamide
0.024 - 1.3
NAD+
0.04 - 0.24
NADH
0.05 - 43.6
dihydrolipoamide
0.31 - 5
Lipoamide
0.06 - 0.55
NAD+
0.071 - 0.13
NADH
additional information
additional information
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TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.42 - 1309
dihydrolipoamide
67 - 519
Lipoamide
0.42 - 899
NAD+
6 - 1032
dihydrolipoamide
14.4 - 649
Lipoamide
6.75 - 574
NAD+
19.8 - 340
NADH
additional information
additional information
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kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
52 - 1405
dihydrolipoamide
0.89 - 4732
NAD+
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00196
diisopropyl fluorophosphate
Homo sapiens
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SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
143.1
mutant N286Q
179.6
mutant N286D
283.1
mutant D320N
586.5
wild-type
16.6
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purified recombinant mutant D473L
280
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purified recombinant mutant T44V enzyme
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.5
assay at
8
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assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
22
assay at room temperature
37
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assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
immunochemical analysis of dihydrolipoamide dehydrogenase protein levels
Manually annotated by BRENDA team
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Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
malfunction
metabolism
dihydrolipoamide dehydrogenase (E3) is a component of three different catabolic multienzyme complexes that oxidize pyruvate, 2-oxoglutarate, or glycine, where E3 catalyzes the final step in a sequence of oxidative reactions
physiological function
malfunction
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pathogenic mutations of LADH cause severe metabolic disturbances, called E3 deficiency that often involve cardiological and neurological symptoms and premature death. Some of the known pathogenic mutations augment the reactive oxygen species (ROS) generation capacity of LADH, which may contribute to the clinical presentations. Structural changes are likely to turn the physiological LADH conformation to its ROS-generating conformation
physiological function
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
DLDH_HUMAN
509
0
54177
Swiss-Prot
Mitochondrion (Reliability: 2)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
110000
55000
2 * 55000, SDS-PAGE
50216
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2 * 50216, amino acid sequence calculation
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
homodimer
dimer
homodimer
additional information
-
the homodimeric enzyme is the E3 component of 2-ketoacid dehydrogenase multienzyme complex
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
crystals are grown from droplets of 0.002 ml of protein solution at 15 mg/ml and 0.002 ml of reservoir solution containing 10-20% polyethylene glycol 6000, 200 mM diammonium citrate, and 1 mM sodium azide
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hanging drop vapour diffusion method
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sitting drop vapor diffusion method, using 0.1 M Bis-Tris pH 7.45, 0.2 M MgCl2, 25% (w/v) PEG 3350 for the wild type enzyme and 1.6 M NaH2PO4/K2HPO4 pH 8.1 plus 2.5 M K2HPO4 for mutant enzyme D444V
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PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A328V
site-directed mutagenesis of the conserved residue, the site-specific dihydrolipoamide dehydrogenase mutant shows a switched kinetic mechanism, it shows a random sequential kinetic mechanism with an interaction factor (alpha) of 8.5. The mutation deteriorates substantially the catalytic power of human E3 enzyme increasing the binding affinity for NAD+ and dihydrolipoamide . The mutation triggers this potential intrinsic property of the enzyme causing the kinetic mechanism of the mutant to switch from a ping-pong mechanism to a random sequential mechanism
C50A
site-directed mutagenesis, catalytic efficiency of mutant C50A toward NAD+ decreases 5317fold compared to the wild-type enzyme, the mutation destroys the active disulfide center between Cys45 and Cys50, which restricts the freedom of Cys50
C50T
site-directed mutagenesis, catalytic efficiency of mutant C50A toward NAD+ decreases 2057fold compared to the wild-type enzyme, the mutation destroys the active disulfide center between Cys45 and Cys50, which restricts the freedom of Cys50
D320N
D413A
substitutions has no large effects on E3 activity when measured in its free form. However, when reconstituted in the complex, the pyruvate dehydrogenase activity is reduced to 18%. The binding affinities of the mutant to the di-domain of the E3-binding protein are severely reduced
D444V
naturally occuring mutation, the mutation significantly stimulates ROS generation of the mutant enzyme, the mutation triggers the oxidative deterioration of the lipoic acid cofactors of both PDHc-E2 and KGDHc-E2 in a yeast model and leads to a great reduction in the respiratory function of the yeast cells
DELTAG101
naturally occuring mutation, the mutation is involved in E3 deficiency
E340K
naturally occuring mutation, the mutation significantly stimulates ROS generation of the mutant enzyme, the mutation triggers the oxidative deterioration of the lipoic acid cofactors of both PDHc-E2 and KGDHc-E2 in a yeast model and leads to a great reduction in the respiratory function of the yeast cells. The mutant shows greatly enhanced exposure or dynamics of the C-terminus (fragments 465-474, 469-474)
G194C
naturally occuring mutation, the mutation significantly stimulates ROS generation of the mutant enzyme, the mutation triggers the oxidative deterioration of the lipoic acid cofactors of both PDHc-E2 and KGDHc-E2 in a yeast model and leads to a great reduction in the respiratory function of the yeast cells
G426E
naturally occuring mutation, the mutation is involved in E3 deficiency
H329A
site-directed mutagenesis, the kcat value of the mutant is significantly decreased by 24fold as compared to the wild-type, indicating that the mutation severely deteriorates the catalytic power of the enzyme
I12T
naturally occuring mutation, the mutation is involved in E3 deficiency
I318T
naturally occuring mutation, the substitution triggers major structural disturbance only at the C-terminus
I445M
L99A
the mutation deteriorates the catalytic power of the enzyme substantially
M326V
naturally occuring mutation, the mutation is involved in E3 deficiency
N286D
N286Q
P154A
the mutation makes enzyme binding to both dihydrolipoamide and NAD+ inefficient
P156A
site-directed mutagenesis, the mutant shows reduced catalytic efficiency compared to the wild-type enzyme
P303A
site-directed mutagenesis, the mutant shows reduced catalytic efficiency compared to the wild-type enzyme
P355A
the mutation makes enzyme binding to NAD+ substantially less efficient. The catalytic efficiency of the mutant toward NAD+ is decreased by 81% compared to the wild type enzyme
P387A
the mutation deteriorates severely the catalytic power of the enzyme
P423A
the mutation makes enzyme binding to both dihydrolipoamide and NAD+ inefficient
P453L
naturally occuring mutation, the mutation significantly stimulates ROS generation of the mutant enzyme, the mutation triggers the oxidative deterioration of the lipoic acid cofactors of both PDHc-E2 and KGDHc-E2 in a yeast model and leads to a great reduction in the respiratory function of the yeast cells. The mutant shows greatly enhanced exposure or dynamics of the C-terminus (fragments 465-474, 469-474)
R281K
specific activity is 11.93% to that of wild-type E3. FAD-content is about 93% that of wild-type E3. Kcat of forward reaction is decreased dramatically. Substitution has no effect in the self-dimerization
R281N
specific activity is 12.50% to that of wild-type E3. FAD-content is about 96% that of wild-type E3. Kcat of forward reaction is decreased dramatically. Substitution has no effect in the self-dimerization
R447G
naturally occuring mutation, the mutant shows greatly enhanced exposure or dynamics of the C-terminus (fragments 465-474, 469-474)
T148G
specific activity is 76.34% to that of wild-type E3. FAD-content is about 710% that of wild-type E3. Substitution has no effect in the self-dimerization
T148S
specific activity is 88.62% to that of wild-type E3. FAD-content is about 92% that of wild-type E3. Substitution has no effect in the self-dimerization
Y438A
substitutions has no large effects on E3 activity when measured in its free form. However, when reconstituted in the complex, the pyruvate dehydrogenase activity is reduced to 9%. The binding affinities of the mutant to the di-domain of the E3-binding protein are severely reduced and binding of is accompanied by an unfavorable enthalpy change and a large positive entropy change
Y438H
substitutions has no large effects on E3 activity when measured in its free form. However, when reconstituted in the complex, the pyruvate dehydrogenase activity is reduced to 20%. The binding affinities of the mutant to the di-domain of the E3-binding protein ire severely reduced
A1444G
-
substitution located in exon 13 leading to 20% of wild type activity
C45S
-
Ser-45 mutant is highly purified, shows 5270fold lower activity than wild-type enzyme. Destroyed disulfide bond between Cys-45 and Cys-50 of the active disulfide center in human E3. UV-visible spectrum of the Ser-45 mutant is similar to that of the reduced form of the enzyme and the second fluorescence emission of the mutant disappears
C45Y
-
purification of the Tyr-45 mutant is not successful. Recombinant human E3 becomes too unstable to be easily obtained from Escherichia coli
D413A
-
the mutant shows 85% activity in the forward reaction and 79% activity in the reverse reaction compared to the wild type enzyme
D413N
-
the mutant shows 119% activity in the forward reaction and 96% activity in the reverse reaction compared to the wild type enzyme
D444V
D473L
-
site-directed mutagenesis, mutant shows about 37fold decreased activity and small conformational changes compared to the wild-type enzyme
E192Q
-
specific activity is markedly decreased, less than 5% of the wild-type activity, Km-values for lipoamide and dihydrolipoamide are markedly reduced
E340K
E431A
-
exhibits very similar expression levels and purification yields as the wild-type, but abolishes the proteolytic activity
E457Q
-
molar ratio of FAD to enzyme is 0.9 compared to 1 for the wild-type enzyme, mutation affects the environment surrounding FAD, decrease in efficiency of electron transfer from the reduced flavin to the oxidized substrate
G194C
-
mutation affecting the ability of FAD, NAD+, or NADH to bind to E3
H348A
-
the mutant shows 60% activity in the forward reaction and 66% activity in the reverse reaction compared to the wild type enzyme
H348L
-
the mutant shows 65% activity in the forward reaction and 74% activity in the reverse reaction compared to the wild type enzyme
H450A
-
shows an increase in proteolytic activity as compared with the wild-type
H452Q
-
molar ratio of FAD to enzyme is 0.94 compared to 1 for the wild-type enzyme, no production of NADH when the enzyme is reduced by dihydrolipoamide, transfer of electrons from the substrate dihydrolipoamide to NAD+ is extremely low
I358T
-
mutation affecting the ability of FAD, NAD+, or NADH to bind to E3
I51A
-
mutant with about 100fold reduced activity compared to the wild type enzyme
K54E
-
about 25% less bound FAD compared to wild-type, specific activity is markedly decreased, less than 5% of the wild-type activity, Km-value for lipoamide is increased by about twofold
M326V
-
mutation affecting the ability of FAD, NAD+, or NADH to bind to E3
P325A
-
mutation of highly conserved resdue in the central domain, about 150fold decrease in kcat value
P453L
-
causes E3 deficiency
P453V
-
1650fold lower specific activity compared to the wild type enzyme
R447A
-
the mutant shows 110% activity in the forward reaction and 122% activity in the reverse reaction compared to the wild type enzyme
R447G
-
missense mutation, expressed at 28ºC the mutant exhibits essentially wild-type E3 activity, at 37°C the activity is reduced to 28% of that of the wild type enzyme
R460G
S456A
-
exhibits very similar expression levels and purification yields as the wild-type, but abolishes the proteolytic activity
S456A/D444V
-
low levels of residual activity
S53K/K54S
-
about 25% less bound FAD compared to wild-type, specific activity is markedly decreased, less than 5% of the wild-type activity, Km-values for lipoamide and dihydrolipoamide are markedly reduced. The catalytic rate constant, turnover number/Km, is significantly lower than wild-type
T44V
-
site-directed mutagenesis, mutation of Thr44 of the FAD-binding region to Val, corresponding to the prokaryotic sequence, results in 2.2fold reduced activity with a slightly different microenvironment at the FAD-binding site
W366A
-
mutation of highly conserved residue. kinetic parameters similar to wild-type
Y438A
-
the mutant shows 100% activity in the forward reaction and 91% activity in the reverse reaction compared to the wild type enzyme
Y438F
-
the mutant shows 100% activity in the forward reaction and 112% activity in the reverse reaction compared to the wild type enzyme
Y438H
-
the mutant shows 99% activity in the forward reaction and 92% activity in the reverse reaction compared to the wild type enzyme
additional information
-
deletion mutant DELTAG101 causes E3 deficiency
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
gel filtration
Ni-NTA His-Bind resin column chromatography
nickel affinity column chromatography
recombinant His-tagged E3 wild-type and mutant proteins
recombinant His-tagged wild-type and mutant enzymes from Escherichia coli strain DH5alpha by nickel affinity chromatography and dialysis
recombinant His-tagged wild-type and mutant enzymes from Escherichia coli strain XL-1 Blue by nickel affinity chromatography and dialysis
recombinant His6-tagged enzyme from Escherichia coli strain BL21(DE3) by immobilized metal affinity chromatography and gel filtration
recombinant N-terminally GST-tagged enzyme from Escherichia coli strain BL21(DE3) by glutathione affinity chromatography
Strep-Tactin Sepharose column chromatography
wild-type and mutant proteins, highly purified
Ni-NTA agarose column chromatography, gel filtration
-
Ni-NTA resin column chromatography and gel filtration
-
nickel iminodiacetic acid Sepharose 6B column chromatography
-
recombinant D473L mutant from Escherichia coli to homogeneity
-
recombinant mutant T44V from Escherichia coli strain XL1-Blue
-
Sephacryl S-100 column gel filtration
-
Superdex HR-200 gel filtration
-
wild-type and mutant enzymes K37E, H452Q and E457Q
-
wild-type and mutant enzymes K54E, S53K54-K53S54 and E192Q
-
wild-type DLD and mutants purified by nickel affinity chromatography. C-term DLD purified to near homogeneity by a five-step procedure
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli
expressed in Escherichia coli DH5alpha cells
expressed in Escherichia coli JM83 cells
gene dld, DNA and amino acid sequence determination and analysis, genotyping
gene dld, located on chromosome 7, recombinant expression of His-tagged wild-type and mutant enzymes in Escherichia coli strain XL-1 Blue
gene dld, recombinant expression of His-tagged wild-type and mutant enzymes in Escherichia coli strain DH5alpha
gene dld, recombinant expression of His-tagged wild-type and mutant enzymes in Escherichia coli strain XL-1 Blue
gene encoding hDLDH but excluding the N-terminal 1?35 signal peptide region and containing an N-terminal His6-tag, recombinant expression in Escherichia coli strain BL21(DE3)
His-tagged wild-type and mutant proteins overexpressed in Escherichia coli
mutants cloned into pQE-9 vector
recombinant expression of N-terminally GST-tagged enzyme in Escherichia coli strain BL21(DE3)
expressed in Escherichia coli
-
expressed in Escherichia coli BL21 cells
-
expressed in Escherichia coli XL1-Blue
-
expression of D473L mutant in Escherichia coli strain XL1-Blue
-
expression of mutant T44V in Escherichia coli strain XL1-Blue
-
wild-type and mutant enzymes K37E, H452Q and E457Q
-
wild-type and mutant enzymes K37E, H452Q and E457Q, overexpression in Escherichia coli
-
wild-type and mutant enzymes K54E, S53K54-K53S54 and E192Q, overexpression in Escherichia coli
-
wild-type DLD and mutant D444V expressed in Escherichia coli BL21 with an N-terminal six-histidine tag. C-term DLD, the interface domain residing the proteolytic activity of DLD, expressed in Escherichia coli without any tags
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
the full-length isoform of dihydrolipoamide dehydrogenase is induced by Nutin-3, while the shorter isoform of dihydrolipoamide dehydrogenase is downregulated by Nutlin-3, immunochemical analysis of dihydrolipoamide dehydrogenase protein levels after MDM2 perturbation, overview. Depletion of MDM2 using siRNA elevates dihydrolipoamide dehydrogenase in Nutlin-3-treated cells. An increase in MDM2/dihydrolipoamide dehydrogenase complexes in the nucleus is further enhanced by the nuclear export inhibitor Leptomycin B
the full-length isoform of dihydrolipoamide dehydrogenase is induced by Nutin-3, while the shorter isoform of dihydrolipoamide dehydrogenase is downregulated by Nutlin-3, immunochemical analysis of dihydrolipoamide dehydrogenase protein levels after MDM2 perturbation, verview
the expression level of the enzyme is significantly lower in the head and neck cancer than in normal cells
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APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
degradation
medicine
degradation
medicine
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Carothers, D.J.; Pons, G.; Patel, M.S.
Dihydrolipoamide dehydrogenase: functional similarities and divergent evolution of the pyridine nucleotide-disulfide oxidoreductases
Arch. Biochem. Biophys.
268
409-425
1989
Ascaris suum, Azotobacter vinelandii, Bacillus subtilis, Bos taurus, Escherichia coli, Geobacillus stearothermophilus, Halobacterium salinarum, Homo sapiens, Pisum sativum, Pseudomonas aeruginosa, Pseudomonas putida, Rattus norvegicus, Saccharomyces cerevisiae, Saccharomyces pastorianus, Sus scrofa
Manually annotated by BRENDA team
Williams, C.H.
Flavin-containing dehydrogenases
The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )
13
89-173
1976
Azotobacter agilis, Azotobacter vinelandii, Bacillus subtilis, Bos taurus, Brassica oleracea, Enterococcus faecalis, Escherichia coli, Escherichia coli B / ATCC 11303, Escherichia coli Crookes, Escherichia coli M191-6, Globisporangium ultimum, Homo sapiens, Leuconostoc mesenteroides, Mycobacterium tuberculosis, Neurospora crassa, Parvimonas micra, Phytophthora erythroseptica, Pichia kudriavzevii, Proteus vulgaris, Pseudomonas fluorescens, Rattus norvegicus, Saccharomyces cerevisiae, Serratia marcescens, Spinacia oleracea, Squalus acanthias, Sus scrofa
-
Manually annotated by BRENDA team
Liu, T.C.; Korotchkina, L.G.; Hyatt, S.L.; Vettakkorumakankav, N.N.; Patel, M.S.
Spectroscopic studies of the characterization of recombinant human dihydrolipoamide dehydrogenase and its site-directed mutants
J. Biol. Chem.
270
15545-15550
1995
Homo sapiens
Manually annotated by BRENDA team
Liu, T.C.; Soo Hong, Y.; Korotchkina, L.G.; Vettakkorumakankav, N.N.; Patel, M.S.
Site-directed mutagenesis of human dihydrolipoamide dehydrogenase: role of lysine-54 and glutamate-192 in stabilizing the thiolate-FAD intermediate
Protein Expr. Purif.
16
27-39
1999
Homo sapiens
Manually annotated by BRENDA team
Wu, Y.Y.; Hsu, T.C.; Chen, T.Y.; Liu, T.C.; Liu, G.Y.; Lee, Y.J.; Tsay, G.J.
Proteinase 3 and dihydrolipoamide dehydrogenase (E3) are major autoantigens in hepatitis C virus (HCV) infection
Clin. Exp. Immunol.
128
347-352
2002
Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Activity of human dihydrolipoamide dehydrogenase is reduced by mutation at threonine-44 of FAD-binding region to valine
J. Biochem. Mol. Biol.
35
437-441
2002
Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Asparagine-473 residue is important to the efficient function of human dihydrolipoamide dehydrogenase
J. Biochem. Mol. Biol.
38
248-252
2005
Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Examination of the importance of Pro-453 in human dihydrolipoamide dehydrogenase predicted from the three-dimensional structure
Bull. Korean Chem. Soc.
27
819-820
2006
Homo sapiens
-
Manually annotated by BRENDA team
Odievre, M.H.; Chretien, D.; Munnich, A.; Robinson, B.H.; Dumoulin, R.; Masmoudi, S.; Kadhom, N.; Roetig, A.; Rustin, P.; Bonnefont, J.P.
A novel mutation in the dihydrolipoamide dehydrogenase E3 subunit gene (DLD) resulting in an atypical form of alpha-ketoglutarate dehydrogenase deficiency
Hum. Mutat.
25
323-324
2005
Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Activity of human dihydrolipoamide dehydrogenase is largely reduced by mutation at isoleucine-51 to alanine
J. Biochem. Mol. Biol.
39
223-227
2006
Homo sapiens
Manually annotated by BRENDA team
Ciszak, E.M.; Makal, A.; Hong, Y.S.; Vettaikkorumakankauv, A.K.; Korotchkina, L.G.; Patel, M.S.
How dihydrolipoamide dehydrogenase-binding protein binds dihydrolipoamide dehydrogenase in the human pyruvate dehydrogenase complex
J. Biol. Chem.
281
648-655
2006
Homo sapiens
Manually annotated by BRENDA team
Wang, Y.C.; Wang, S.T.; Li, C.; Liu, W.H.; Chen, P.R.; Chen, L.Y.; Liu, T.C.
The role of N286 and D320 in the reaction mechanism of human dihydrolipoamide dehydrogenase (E3) center domain
J. Biomed. Sci.
14
203-210
2007
Homo sapiens (P09622), Homo sapiens
Manually annotated by BRENDA team
Brautigam, C.A.; Chuang, J.L.; Tomchick, D.R.; Machius, M.; Chuang, D.T.
Crystal structure of human dihydrolipoamide dehydrogenase: NAD+/NADH binding and the structural basis of disease-causing mutations
J. Mol. Biol.
350
543-552
2005
Homo sapiens
Manually annotated by BRENDA team
Brautigam, C.A.; Wynn, R.M.; Chuang, J.L.; Machius, M.; Tomchick, D.R.; Chuang, D.T.
Structural insight into interactions between dihydrolipoamide dehydrogenase (E3) and E3 binding protein of human pyruvate dehydrogenase complex
Structure
14
611-621
2006
Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Site-specific modifications of the Cys-45 residue in human dihydrolipoamide dehydrogenase to Ser and Tyr
Bull. Korean Chem. Soc.
28
907-908
2007
Homo sapiens
-
Manually annotated by BRENDA team
Wang, Y.C.; Wang, S.T.; Li, C.; Chen, L.Y.; Liu, W.H.; Chen, P.R.; Chou, M.C.; Liu, T.C.
The role of amino acids T148 and R281 in human dihydrolipoamide dehydrogenase
J. Biomed. Sci.
15
37-46
2008
Homo sapiens (P09622), Homo sapiens
Manually annotated by BRENDA team
Brown, A.M.; Gordon, D.; Lee, H.; Wavrant-De Vrieze, F.; Cellini, E.; Bagnoli, S.; Nacmias, B.; Sorbi, S.; Hardy, J.; Blass, J.P.
Testing for linkage and association across the dihydrolipoyl dehydrogenase gene region with Alzheimers disease in three sample populations
Neurochem. Res.
32
857-869
2007
Homo sapiens
Manually annotated by BRENDA team
Babady, N.E.; Pang, Y.P.; Elpeleg, O.; Isaya, G.
Cryptic proteolytic activity of dihydrolipoamide dehydrogenase
Proc. Natl. Acad. Sci. USA
104
6158-6163
2007
Homo sapiens, Mus musculus, Sus scrofa
Manually annotated by BRENDA team
Park, Y.H.; Patel, M.S.
Characterization of interactions of dihydrolipoamide dehydrogenase with its binding protein in the human pyruvate dehydrogenase complex
Biochem. Biophys. Res. Commun.
395
416-419
2010
Homo sapiens
Manually annotated by BRENDA team
Ambrus, A.; Torocsik, B.; Adam-Vizi, V.
Periplasmic cold expression and one-step purification of human dihydrolipoamide dehydrogenase
Protein Expr. Purif.
63
50-57
2009
Homo sapiens (P09622), Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Characterization of two site-specific mutations in human dihydrolipoamide dehydrogenase
Bull. Korean Chem. Soc.
34
1621-1622
2013
Homo sapiens
-
Manually annotated by BRENDA team
Ambrus, A.; Adam-Vizi, V.
Molecular dynamics study of the structural basis of dysfunction and the modulation of reactive oxygen species generation by pathogenic mutants of human dihydrolipoamide dehydrogenase
Arch. Biochem. Biophys.
538
145-155
2013
Homo sapiens
Manually annotated by BRENDA team
Ambrus, A.; Mizsei, R.; Adam-Vizi, V.
Structural alterations by five disease-causing mutations in the low-pH conformation of human dihydrolipoamide dehydrogenase (hLADH) analyzed by molecular dynamics - implications in functional loss and modulation of reactive oxygen species generation by pa
Biochem. Biophys. Rep.
2
50-56
2015
Homo sapiens (P09622), Homo sapiens
Manually annotated by BRENDA team
Ambrus, A.; Wang, J.; Mizsei, R.; Zambo, Z.; Torocsik, B.; Jordan, F.; Adam-Vizi, V.
Structural alterations induced by ten disease-causing mutations of human dihydrolipoamide dehydrogenase analyzed by hydrogen/deuterium-exchange mass spectrometry implications for the structural basis of E3 deficiency
Biochim. Biophys. Acta
1862
2098-2109
2016
Homo sapiens (P09622), Homo sapiens
Manually annotated by BRENDA team
Moxley, M.A.; Beard, D.A.; Bazil, J.N.
A pH-dependent kinetic model of dihydrolipoamide dehydrogenase from multiple organisms
Biophys. J.
107
2993-3007
2014
Spinacia oleracea (A0A0K9R8G5), Spinacia oleracea, Homo sapiens (P09622), Homo sapiens, Escherichia coli (P0A9P0), Escherichia coli
Manually annotated by BRENDA team
Kim, H.
Characterization of site-specific human dihydrolipoamide dehydrogenase mutant with a switched kinetic mechanism
Bull. Korean Chem. Soc.
35
1603-1604
2014
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Kim, H.
Characterization of site-specific mutations affecting the catalytic efficiency of human dihydrolipoamide dehydrogenase toward NAD+
J. Korean Chem. Soc.
59
183-187
2015
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Kim, H.
Characterization of site-specific mutations in human dihydrolipoamide dehydrogenase significantly destabilizing the transition state of the enzyme catalysis
J. Korean Chem. Soc.
59
344-348
2015
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Kim, H.
Characterization of human dihydrolipoamide dehydrogenase mutant with significantly decreased catalytic power
J. Korean Chem. Soc.
60
378-382
2016
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Dayan, A.; Babin, G.; Ganoth, A.; Kayouf, N.S.; Nitoker Eliaz, N.; Mukkala, S.; Tsfadia, Y.; Fleminger, G.
The involvement of coordinative interactions in the binding of dihydrolipoamide dehydrogenase to titanium dioxide-Localization of a putative binding site
J. Mol. Recognit.
30
e2617
2017
Rhodococcus ruber, Homo sapiens (P09622), Homo sapiens, Rhodococcus ruber GIN1
Manually annotated by BRENDA team
Way, L.; Faktor, J.; Dvorakova, P.; Nicholson, J.; Vojtesek, B.; Graham, D.; Ball, K.L.; Hupp, T.
Rearrangement of mitochondrial pyruvate dehydrogenase subunit dihydrolipoamide dehydrogenase protein-protein interactions by the MDM2 ligand nutlin-3
Proteomics
16
2327-2344
2016
Homo sapiens (P09622)
Manually annotated by BRENDA team
Park, Y.H.; Patel, M.S.
Characterization of interactions of dihydrolipoamide dehydrogenase with its binding protein in the human pyruvate dehydrogenase complex
Biochem. Biophys. Res. Commun.
395
416-419
2010
Homo sapiens (P09622), Homo sapiens
Manually annotated by BRENDA team
Yang, X.; Song, J.; Yan, L.J.
Chronic inhibition of mitochondrial dihydrolipoamide dehydrogenase (DLDH) as an approach to managing diabetic oxidative stress
Antioxidants (Basel)
8
32
2019
Homo sapiens (P09622)
Manually annotated by BRENDA team
Szabo, E.; Mizsei, R.; Wilk, P.; Zambo, Z.; Torocsik, B.; Weiss, M.S.; Adam-Vizi, V.; Ambrus, A.
Crystal structures of the disease-causing D444V mutant and the relevant wild type human dihydrolipoamide dehydrogenase
Free Radic. Biol. Med.
124
214-220
2018
Homo sapiens
Manually annotated by BRENDA team
Dayan, A.; Lamed, R.; Benayahu, D.; Fleminger, G.
RGD-modified dihydrolipoamide dehydrogenase as a molecular bridge for enhancing the adhesion of bone forming cells to titanium dioxide implant surfaces
J. Biomed. Mater. Res. A
107
545-551
2019
Homo sapiens
Manually annotated by BRENDA team
Kim, H.
Characterization of two site-specific mutations in human dihydrolipoamide dehydrogenase deteriorating the apparent enzyme binding affinities to both dihydrolipoamide and NAD+
J. Korean Chem. Soc.
62
253-256
2018
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Kim, H.
Characterization of human dihydrolipoamide dehydrogenase mutant showing significantly decreased catalytic efficiency
J. Korean Chem. Soc.
63
134-137
2019
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Kim, H.
Characterization of a human dihydrolipoamide dehydrogenase mutant showing significantly decreased catalytic efficiency toward NAD+
J. Korean Chem. Soc.
64
141-144
2020
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Kim, H.
Characterization of a site-specifically modified human dihydrolipoamide dehydrogenase mutant showing significantly changed kinetic properties
J. Korean Chem. Soc.
65
83-87
2021
Homo sapiens (P09622)
-
Manually annotated by BRENDA team
Dayan, A.; Yeheskel, A.; Lamed, R.; Fleminger, G.; Ashur-Fabian, O.
Dihydrolipoamide dehydrogenase moonlighting activity as a DNA chelating agent
Proteins
89
21-28
2020
Homo sapiens (P09622)
Manually annotated by BRENDA team
Shin, D.; Lee, J.; You, J.H.; Kim, D.; Roh, J.L.
Dihydrolipoamide dehydrogenase regulates cystine deprivation-induced ferroptosis in head and neck cancer
Redox Biol.
30
101418
2020
Homo sapiens
Manually annotated by BRENDA team