Information on EC 1.8.1.4 - dihydrolipoyl dehydrogenase

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The expected taxonomic range for this enzyme is: Archaea, Bacteria, Eukaryota

EC NUMBER
COMMENTARY hide
1.8.1.4
-
RECOMMENDED NAME
GeneOntology No.
dihydrolipoyl dehydrogenase
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oxidation
redox reaction
-
-
-
-
reduction
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
-
-
2-oxoglutarate decarboxylation to succinyl-CoA
-
-
2-oxoglutarate dehydrogenase complex
-
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2-oxoisovalerate decarboxylation to isobutanoyl-CoA
-
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4-methyl-2-oxopentanoate dehydrogenase (acylating)
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Biosynthesis of antibiotics
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Biosynthesis of secondary metabolites
-
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Citrate cycle (TCA cycle)
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glycine cleavage
-
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Glycine, serine and threonine metabolism
-
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Glycolysis / Gluconeogenesis
-
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Metabolic pathways
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Microbial metabolism in diverse environments
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Propanoate metabolism
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pyruvate decarboxylation to acetyl CoA
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Pyruvate metabolism
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Valine, leucine and isoleucine degradation
-
-
acetyl CoA biosynthesis
-
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citric acid cycle
-
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glycine metabolism
-
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oxidative decarboxylation of pyruvate
-
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SYSTEMATIC NAME
IUBMB Comments
protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase
A flavoprotein (FAD). A component of the multienzyme 2-oxo-acid dehydrogenase complexes. In the pyruvate dehydrogenase complex, it binds to the core of EC 2.3.1.12, dihydrolipoyllysine-residue acetyltransferase, and catalyses oxidation of its dihydrolipoyl groups. It plays a similar role in the oxoglutarate and 3-methyl-2-oxobutanoate dehydrogenase complexes. Another substrate is the dihydrolipoyl group in the H-protein of the glycine-cleavage system ({AminoAcid/GlyCleave} for diagram), in which it acts, together with EC 1.4.4.2, glycine dehydrogenase (decarboxylating), and EC 2.1.2.10, aminomethyltransferase, to break down glycine. It can also use free dihydrolipoate, dihydrolipoamide or dihydrolipoyllysine as substrate. This enzyme was first shown to catalyse the oxidation of NADH by methylene blue; this activity was called diaphorase. The glycine cleavage system is composed of four components that only loosely associate: the P protein (EC 1.4.4.2), the T protein (EC 2.1.2.10), the L protein (EC 1.8.1.4) and the lipoyl-bearing H protein [6].
CAS REGISTRY NUMBER
COMMENTARY hide
9001-18-7
-
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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-
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Manually annotated by BRENDA team
ecotypes Col-0 and Col-2
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Manually annotated by BRENDA team
Azotobacter agilis
-
-
-
Manually annotated by BRENDA team
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UniProt
Manually annotated by BRENDA team
-
-
-
Manually annotated by BRENDA team
-
-
-
Manually annotated by BRENDA team
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UniProt
Manually annotated by BRENDA team
-
-
-
Manually annotated by BRENDA team
strain Crookes
-
-
Manually annotated by BRENDA team
strains AH242 SE2378 and SE2382
-
-
Manually annotated by BRENDA team
strain M191-6
-
-
Manually annotated by BRENDA team
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SwissProt
Manually annotated by BRENDA team
C57/Bl-6 mice
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-
Manually annotated by BRENDA team
no activity in Escherichia coli
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-
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Manually annotated by BRENDA team
no activity in Mycobacterium smegmatis
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-
-
Manually annotated by BRENDA team
-
-
-
Manually annotated by BRENDA team
3D7, 2 lipdh genes encoding 2 isozymes in mitochondrion and apicoplast, both indispensable components of the 2-ketoacid dehydrogenase multienzyme complexes
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Manually annotated by BRENDA team
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-
Manually annotated by BRENDA team
strain PpG2
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Manually annotated by BRENDA team
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Manually annotated by BRENDA team
ATCC 27405T
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Manually annotated by BRENDA team
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Manually annotated by BRENDA team
Starkeyomyces koorchalomoides
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Manually annotated by BRENDA team
Starkeyomyces koorchalomoides FDUS 0337
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-
-
Manually annotated by BRENDA team
PCC6803
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-
Manually annotated by BRENDA team
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UniProt
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
malfunction
metabolism
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enzyme is inactivated by complex III- but not complex I-derived reactive oxygen species, and the accompanying loss of activity due to the inactivation can be restored by cysteine and glutathione. H2O2 instead of superoxide anion is responsible for the inactivation, and protein sulfenic acid formation is associated with the loss of enzymatic activity
physiological function
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
1,4-benzoquinone + NADH
1,4-benzoquinol + NAD+
show the reaction diagram
1-methoxy phenazine methosulfate + NADH
? + NAD+
show the reaction diagram
2 ferricyanide + NADH
2 ferrocyanide + NAD+ + H+
show the reaction diagram
2 ferricytochrome c + NADH
2 ferrocytochrome c + NAD+ + H+
show the reaction diagram
-
cytochrome c is a poor electron acceptor, only in presence of methylene blue the enzyme shows some activity
-
-
?
2,6-dimethoxy-1,4-benzoquinone + NADH
? + NAD+
show the reaction diagram
8.0% activity compared to lipoamide
-
-
?
2,6-dimethyl-1,4-benzoquinone + NADH
2,6-dimethyl-1,4-benzoquinol + NAD+
show the reaction diagram
2-(p-iodophenyl)-3-p-nitrophenyl-5-phenyltetrazolium chloride + NADH
? + NAD+
show the reaction diagram
-
-
-
?
2-hydroxy-1,4-benzoquinone + NADH
2-hydroxy-1,4-benzoquinol + NAD+
show the reaction diagram
-
-
-
-
?
2-methyl-1,4-benzoquinone + NADH
2-methyl-1,4-benzoquinol + NAD+
show the reaction diagram
-
-
-
-
?
2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide + NADH
?
show the reaction diagram
3-nitrotyrosine + dihydrolipoic acid
3-aminotyrosine + lipoic acid + H2O
show the reaction diagram
3-nitrotyrosine + NAD(P)H
3-aminotyrosine + NAD(P)+ + H2O
show the reaction diagram
-
-
-
-
?
3-nitrotyrosine + NADPH
3-aminotyrosine + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
3-nitrotyrosine + ubiquinol
3-aminotyrosine + ubiquinone + H2O
show the reaction diagram
5,5'-dithiobis-(2-nitrobenzoic acid) + NADH + H+
? + NAD+
show the reaction diagram
5-hydroxy-1,4-naphthoquinone + NADH
5-hydroxy-1,4-naphthoquinol + NAD+
show the reaction diagram
-
-
-
-
?
5-nitroblue tetrazolium chloride + NADH
? + NAD+
show the reaction diagram
-
5.1% of the activity with lipoamide
-
-
?
8-nitroguanine + dihydrolipoic acid
8-aminoguanine + lipoic acid + H2O
show the reaction diagram
8-nitroguanine + NAD(P)H
8-aminoguanine + NAD(P)+ + H2O
show the reaction diagram
-
-
-
-
?
8-nitroguanine + NADPH
8-aminoguanine + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
8-nitroguanine + ubiquinol
8-aminoguanine + ubiquinone + H2O
show the reaction diagram
8-nitroxanthine + dihydrolipoic acid
8-aminoxanthine + lipoic acid + H2O
show the reaction diagram
8-nitroxanthine + NAD(P)H
8-aminoxanthine + NAD(P)+ + H2O
show the reaction diagram
-
-
-
-
?
8-nitroxanthine + NADPH
8-aminoxanthine + NADP+ + H2O
show the reaction diagram
-
-
-
-
?
8-nitroxanthine + ubiquinol
8-aminoxanthine + ubiquinone + H2O
show the reaction diagram
acetaldoxime + NADH
?
show the reaction diagram
alpha-lipoamide + NADH
dihydrolipoamide + NAD+
show the reaction diagram
alpha-lipoamide + NADH + H+
dihydrolipoamide + NAD+
show the reaction diagram
alpha-lipoic acid + NADH + H+
dihydrolipoic acid + NAD+
show the reaction diagram
benzyl viologen + NADH
? + NAD+
show the reaction diagram
-
2.9% of the activity with lipoamide
-
-
?
coenzyme Q-10 + NADPH
ubiquinol + NADP+
show the reaction diagram
dihydrolipoamide + NAD+
lipoamide + NADH
show the reaction diagram
dihydrolipoamide + NAD+
lipoamide + NADH + H+
show the reaction diagram
dihydrolipoamide + NADP+
lipoamide + NADPH
show the reaction diagram
-
-
-
r
DL-6,8-thiooctic acid amide + NADH
? + NAD+
show the reaction diagram
-
-
-
-
r
DL-alpha-lipoamide + NADH
dihydrolipoamide + NAD+
show the reaction diagram
-
-
-
-
?
DL-lipoamide + NADH
DL-dihydrolipoamide + NAD+
show the reaction diagram
DL-lipoate + NADH
? + NAD+
show the reaction diagram
-
-
-
-
?
DL-lipoylbutanoate + NADH
? + NAD+
show the reaction diagram
-
-
-
-
?
DL-lipoylpentanoate + NADH
? + NAD+
show the reaction diagram
-
100fold reaction by the enzyme in two-electron-reduced state compared to the enzyme in four-electron-reduced state
-
-
?
ferrocene + NADH
? + NAD+
show the reaction diagram
3.6% activity compared to lipoamide
-
-
?
ferrocenecarboxylic acid + NADH
? + NAD+
show the reaction diagram
4.1% activity compared to lipoamide
-
-
?
formaldoxime + NADH
?
show the reaction diagram
glycerol trinitrate + NADH
?
show the reaction diagram
hexacyanoferrate + NADH
? + NAD+
show the reaction diagram
-
-
-
-
?
hydroxylamine hydrochloride + NADH
?
show the reaction diagram
iodonitrotetrazolium + NADH
? + NAD+
show the reaction diagram
-
-
-
-
?
iodonitrotetrazolium chloride + NADH
? + NAD+
show the reaction diagram
19.3% activity compared to lipoamide
-
-
?
lipoamide + 3-acetylpyridine adenine dinucleotide
dihydrolipoamide + ?
show the reaction diagram
-
-
-
-
?
lipoamide + NADH
dihydrolipoamide + NAD+
show the reaction diagram
lipoamide + NADH + H+
dihydrolipoamide + NAD+
show the reaction diagram
lipoamide + nicotinamide hypoxanthine dinucleotide
dihydrolipoamide + ?
show the reaction diagram
-
-
-
-
?
lipoamide + thio-NADH
dihydrolipoamide + thio-NAD+
show the reaction diagram
-
-
-
-
?
lipoic acid + NADH
dihydrolipoic acid + NAD+
show the reaction diagram
mature frataxin + NADH
denoted frataxin + NAD+
show the reaction diagram
menadione + NADH
? + NAD+
show the reaction diagram
methylene blue + NADH
? + NAD+
show the reaction diagram
metmyoglobin + NADH
reduced myoglobin + NAD+
show the reaction diagram
-
myoglobin is a poor electron acceptor, only in presence of methylene blue the enzyme shows some activity
-
-
?
NADH + H+ + oxidized 2,6-dichlorophenolindophenol
NAD+ + reduced 2,6-dichlorophenolindophenol
show the reaction diagram
NADPH + H+ + oxidized 2,6-dichlorophenolindophenol
NADP+ + reduced 2,6-dichlorophenolindophenol
show the reaction diagram
-
-
-
-
?
naphthoquinone + NADH
1,4-naphthoquinol + NAD+
show the reaction diagram
nitrated DNA + NAD(P)H
?
show the reaction diagram
-
enzyme reduces DNA nitro adducts including 8-nitroguanine, 3-nitrotyrosine, and 8-nitroxanthine, which formed in presence of peroxynitrite and nitryl chloride present in inflamed tissues, the nitrated DNA adducts are unstable and undergo spontaneous depurination which can cause cancer, enzyme might be resonsible for reversing biological nitration processes
-
-
?
nitrated DNA + NADPH
DNA + NADP+ + H2O
show the reaction diagram
-
enzyme reduces DNA nitro adducts including 8-nitroguanine, 3-nitrotyrosine, and 8-nitroxanthine, which formed in presence of peroxynitrite and nitryl chloride present in inflamed tissues, the nitrated DNA adducts are unstable and undergo spontaneous depurination
-
-
?
nitric oxide + NADH
nitrate + NAD+
show the reaction diagram
-
-
-
-
?
nitro blue tetrazolium + NADH
? + NAD+
show the reaction diagram
nitrotetrazolium blue + NADH
? + NAD+
show the reaction diagram
2.9% activity compared to lipoamide
-
-
?
O2 + NADH
?
show the reaction diagram
O2 + NADH
H2O2 + NAD+
show the reaction diagram
O2 + NADH + H+
H2O2 + NAD+
show the reaction diagram
-
-
-
-
?
oxidized 2,6-dichlorophenolindophenol + NADH
? + NAD+
show the reaction diagram
oxidized lipoamide + NADH
reduced lipoamide + NAD+
show the reaction diagram
-
-
-
-
?
oxidized lipoic acid + NADH
reduced lipoic acid + NAD+
show the reaction diagram
-
-
-
-
?
pyruvate + NADH
?
show the reaction diagram
-
-
-
-
?
reduced DL-lipoamide + NAD+
oxidized DL-lipoamide + NADH
show the reaction diagram
-
-
-
-
r
reduced lipoamide + NAD+
oxidized lipoamide + NADH
show the reaction diagram
resazurin + NADH
? + NAD+
show the reaction diagram
155.8% activity compared to lipoamide
-
-
?
resorufin + NADH
? + NAD+
show the reaction diagram
19.1% activity compared to lipoamide
-
-
?
S-nitroso-N-acetylpenicillamine + NADH
?
show the reaction diagram
S-nitrosoglutathione + NADH
?
show the reaction diagram
sodium nitroprusside + NADH
?
show the reaction diagram
sulfonated tetrazolium + NADH
? + NAD+
show the reaction diagram
39.2% activity compared to lipoamide
-
-
?
tellurite + NADH
NAD+ + ?
show the reaction diagram
thio-NAD+ + NADH
thio-NADH + NAD+
show the reaction diagram
ubiquinone + NAD(P)H
ubiquinol + NAD(P)+
show the reaction diagram
ubiquinone-10 + NAD(P)H
ubiquinol-10 + NAD(P)+
show the reaction diagram
vitamin K5 + NADH
?
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATES
NATURAL PRODUCTS
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
alpha-lipoamide + NADH + H+
dihydrolipoamide + NAD+
show the reaction diagram
dihydrolipoamide + NAD+
lipoamide + NADH
show the reaction diagram
nitrated DNA + NAD(P)H
?
show the reaction diagram
-
enzyme reduces DNA nitro adducts including 8-nitroguanine, 3-nitrotyrosine, and 8-nitroxanthine, which formed in presence of peroxynitrite and nitryl chloride present in inflamed tissues, the nitrated DNA adducts are unstable and undergo spontaneous depurination which can cause cancer, enzyme might be resonsible for reversing biological nitration processes
-
-
?
nitrated DNA + NADPH
DNA + NADP+ + H2O
show the reaction diagram
-
enzyme reduces DNA nitro adducts including 8-nitroguanine, 3-nitrotyrosine, and 8-nitroxanthine, which formed in presence of peroxynitrite and nitryl chloride present in inflamed tissues, the nitrated DNA adducts are unstable and undergo spontaneous depurination
-
-
?
reduced lipoamide + NAD+
oxidized lipoamide + NADH
show the reaction diagram
-
enzyme catalyzes the NAD+-dependent oxidation of dihydrolipoyl cofactors being covalently attached to the acyltransferase components of pyruvate dehydrogenase, 2-ketoglutarate dehydrogenase, and glycine reductase multienzyme complexes
-
-
r
ubiquinone + NAD(P)H
ubiquinol + NAD(P)+
show the reaction diagram
ubiquinone-10 + NAD(P)H
ubiquinol-10 + NAD(P)+
show the reaction diagram
-
reaction is important to protect the cell e.g. from oxidative stress
-
-
?
additional information
?
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Dihydrolipoic acid
NAD(P)H
NADP+
NADPH
ubiquinol
additional information
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Cd2+
-
highly, specifically stimulating for ubiquinone reduction, optimal at 0.5 mM
Fe
-
amino acid sequence homology indicates the presence of a Fe-containing rubredoxin-like domain. The amount of iron is determined to be 1.1 molecule per rDiaA molecule by ICP atomic emission spectroscopy
KCl
-
maximal enzymatic activity at 2 to 3 M KCl
Mg2+
-
NADH-oxidation with free lipoic acid is strongly dependent on the addition of NAD+, EDTA, Mg2+ and cysteine, the reverse reaction with reduced lipoic acid and NAD+ does not show any requirement for cofactors
NaCl
-
completely inactive in absence of NaCl
additional information
INHIBITORS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1,3-bis(2-chloroethyl)-1-nitrourea
-
after reduction of the oxidized form of enzyme to the two-electron-reduced state
1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
-
at higher concentrations (2 mM) significantly inhibits the lipoamide dehydrogenase activity
1-methyl-4-phenylpyridinium
-
at lower concentrations (1 mM) as compared to 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine significantly inhibits the lipoamide dehydrogenase activity
10-(2-dimethylaminopropyl)-dibenzothiazine cation radical
-
60% inactivation after 10 min incubation and 79% after 30 min using the myeloperoxidase system, 72% inactivation after 10 min incubation using the horseradish peroxidase system
10-(2-methyl,3-dimethylaminopropyl)-dibenzothiazine cation radical
-
90% inactivation after 10 min and 30 min incubation using the myeloperoxidase system, 94% inactivation after 10 min incubation using the horseradish peroxidase system
10-(3-dimethylaminopropyl)-dibenzothiazine cation radical
-
87% inactivation after 10 min incubation and 89% after 30 min using the myeloperoxidase system, 94% inactivation after 10 min incubation using the horseradish peroxidase system
2-amino-4-hydroxy-6,7-dimethyl-5,6,7,8-tetrahydropteridine hydrochloride
-
inhibition of NADH-lipoamide oxidoreductase activity, no effect on diaphorase activity and transhydrogenase activity
2-amino-4-hydroxy-6,7-dimethyl-7,8-dihydropteridine
-
inhibition of NADH-lipoamide oxidoreductase activity, no effect on diaphorase activity and transhydrogenase activity
2-amino-4-hydroxy-6-methyl-7,8-dihydropteridine
-
inhibition of NADH-lipoamide oxidoreductase activity, no effect on diaphorase activity and transhydrogenase activity
2-chloro-10-(3-dimethylaminopropyl)-dibenzothiazine cation radical
-
45% inactivation after 10 min incubation and 75% after 30 min using the myeloperoxidase system, 89% inactivation after 10 min incubation using the horseradish peroxidase system
2-chloro-10-[3-(1-methyl-4-piperazinyl)-propyl]-dibenzothiazine cation radical
-
54% inactivation after 10 min incubation and 80% after 30 min using the myeloperoxidase system, 90% inactivation after 10 min incubation using the horseradish peroxidase system
2-chloro-10-[3-[1-(2-hydroxyethyl)-4-piperazinyl]propyl]-dibenzothiazine cation radical
-
42% inactivation after 10 min incubation and 69% after 30 min using the myeloperoxidase system, 79% inactivation after 10 min incubation using the horseradish peroxidase system
2-methylmercapto-10-[2-(1-methyl-2-piperidinyl)-ethyl]-dibenzothiazine cation radical
-
77% inactivation after 10 min incubation and 82% after 30 min using the myeloperoxidase system, 85% inactivation after 10 min incubation using the horseradish peroxidase system
2-propionyl-10-(3-dimethylaminopropyl)-dibenzothiazine cation radical
-
11% inactivation after 10 min incubation and 32% after 30 min using the myeloperoxidase system, 83% inactivation after 10 min incubation using the horseradish peroxidase system
2-trifluoromethyl-10-[3-(1-methyl-4-piperazinyl)propyl]-dibenzothiazine cation radical
-
5% inactivation after 10 min incubation and 16% after 30 min using the myeloperoxidase system, 67% inactivation after 10 min incubation using the horseradish peroxidase system
2-trifluoromethyl-10-[3-(dimethylamino)propyl]-dibenzothiazine cation radical
-
2% inactivation after 10 and 30 min incubation using the myeloperoxidase system, 16% inactivation after 10 min incubation using the horseradish peroxidase system
2-trifluoromethyl-10-[3-[1-(2-hydroxyethyl)4-piperazinyl]propyl]-dibenzothiazine cation radical
-
1% inactivation after 10 min incubation and 8% after 30 min using the myeloperoxidase system, 61% inactivation after 10 min incubation using the horseradish peroxidase system
2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl]-N-[3-(trifluoromethyl)benzyl]acetamide
-
5-methoxyindole-2-carboxylic acid
Angeli's salt
-
at 2 mM, induces a 90% loss in DLDH diaphorase activity
arsenite
Cd2+
-
in presence of NADH, inhibition is reversed by dithiols and less effectively by monothiols
chlorpromazine
-
0.1 mM, 75% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 94% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 89% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
Diethylamine NONOate
-
induces 71% loss in diaphorase activity at 10 mM, but does not induce any activity loss at 2 mM
Dihydrolipoamide
-
-
diisopropyl fluorophosphate
diphenyleneiodonium chloride
Fe2+
-
at high concentrations has significant inhibitory effect on the lipoamide dehydrogenase activity
fluphenazine
-
0.1 mM, 53% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 61% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
folic acid
-
inhibition of NADH-lipoamide oxidoreductase activity, no effect on diaphorase activity and transhydrogenase activity
Guanidine-HCl
-
4°C: 50% inactivation at 1.0 M, complete inactivation at 1.6 M, reversible
H2O2
-
enzyme is inactivated by complex III- but not complex I-derived reactive oxygen species, and the accompanying loss of activity due to the inactivation can be restored by cysteine and glutathione. H2O2 instead of superoxide anion is responsible for the inactivation, and protein sulfenic acid formation is associated with the loss of enzymatic activity
Hg2+
1 mM shows strong inhibitory effect on recombinant rBfmBC activity (more than 80% inhibition)
iodoacetic acid
-
in presence of NADH or dihydrolipoamide
isobiopterin
-
inhibition of NADH-lipoamide oxidoreductase activity, no effect on diaphorase activity and transhydrogenase activity
-
N-ethylmaleimide
N-[2-(2,4-dichlorophenyl)ethyl]-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl]acetamide
most potent inhibitor, noncompetitive versus NADH, NAD+, and lipoamide
NAD(P)+
-
product inhibition
p-Aminophenyldichloroarsine
p-[(bromoacetyl)-amino]phenyl arsenoxide
-
irreversible active site directed inactivation
Pb2+
1 mM shows strong inhibitory effect on recombinant BfmBC activity (more than 80% inhibition)
PCMB
-
0.1 mM, 50% inhibition
perphenazine
-
0.1 mM, 69% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 75% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 79% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
phenothiazine cation radicals
-
irreversible inactivation dependent on time, radical structure, and radical production enzyme system, radicals are produced by reaction of myeloperoxidase or horse radish peroxidase on the phenothiazines promazine, trimeprazine, thioridazine, chlorpromazine, prochlorperazine, promethazine, and others, in presence of H2O2, protection by radical scavengers e.g. thiol compounds, amino acids and peptides, pyridine dinucleotides like NADH, or best by ascorbate and trolox, overview
potassium phosphate
-
when purified DLDH is eluted directly into potassium phosphate buffer, the enzymatic activity rapidly decreases
prochlorperazine
-
0.1 mM, 80% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 85% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 80% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
promazine
-
0.1 mM, 89% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 93% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 94% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4, 94% inhibition in the presence of 0.2 mM NADH, 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 after 10 min incubation
Promethazine
-
0.1 mM, 79% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 51% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 72% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
propericyazine
-
0.1 mM, 40% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4
propionylpromazine
-
0.1 mM, 32% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 88% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 83% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
S-nitrosocysteine
-
induces a 62% loss in diaphorase activity at 2 mM and an 88% loss at 10 mM
S-nitrosoglutathione
-
induces 84% loss in diaphorase activity at 10 mM, but does not induce any activity loss at 2 mM
thioridazine
-
0.1 mM, 82% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 97% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 85% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4, 85% inhibition in the presence of 0.1 mM NADH, 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 after 10 min incubation
Trifluoperazine
-
0.1 mM, 16% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 72% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 67% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
triflupromazine
-
0.1 mM, 68% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 16% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
trimeprazine
-
0.1 mM, 90% inactivation, in the presence of 0.5 U/ml myeloperoxidase and 0.1 mM H2O2 at pH 7.4, 90% inactivation, in the presence of 0.005 mM myoglobin and 0.25 mM H2O2 at pH 7.4, 94% inactivation in the presence of 0.5 U/ml horseradish peroxidase and 0.2 mM H2O2 at pH 7.4
valproyl-CoA
-
competitive inhibitor, 0.5-1.0 mM inhibit DLDH activity
valproyl-dephosphoCoA
-
uncompetitive inhibitor, 0.5-1.0 mM inhibit DLDH activity
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
cysteine
-
NADH-oxidation with free lipoic acid is strongly dependent on the addition of NAD+, EDTA, Mg2+ and cysteine, the reverse reaction with reduced lipoic acid and NAD+ does not show any requirement for cofactors
dithiothreitol
-
presence during purification preserves enzymatic activity
EDTA
-
NADH-oxidation with free lipoic acid is strongly dependent on the addition of NAD+, EDTA, Mg2+ and cysteine, the reverse reaction with reduced lipoic acid and NAD+ does not show any requirement for cofactors
Guanidine-HCl
-
4°C: activates the enzyme 2.5fold at 0.2 M
KCl
-
4°C: activates the enzyme at concentrations below 1 M
lipoic acid
-
increase in activity might be due to formation of dihydrolipoic acid in the assay system
methylene blue
-
stimulates reduction of cytochrome c and myoglobin
NaCl
-
4°C: activates the enzyme at concentrations below 1 M
NAD+
0.2 mM NAD+ demonstrates a strong activating effect on LPD, and the activity is 5.2 times higher than that without NAD+
ubiquinone
-
slight increase in activity might be due to formation of ubiquinol in the assay system
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.01 - 0.4
1,4-benzoquinone
0.05
1,4-Naphthoquinone
-
-
0.015 - 0.12
2,6-dichlorophenolindophenol
0.86
2,6-dimethyl-1,4-benzoquinone
-
-
0.46 - 1.45
2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide
0.39
3-acetylpyridine adenine dinucleotide
-
-
0.29
5-hydroxy-1,4-naphthoquinone
-
-
0.96
acetaldoxime
-
in 50 mM Tris-HCl buffer (pH 7.6), at 37°C
3.63
alpha-lipoamide
Starkeyomyces koorchalomoides
-
in 0.1 mM Tris-HCl (pH 7.0), 0.0005 mM EDTA, 0.01 mM beta2-mercaptoethanol, at 37°C
0.0107 - 43.6
Dihydrolipoamide
4.7
dihydrolipoate
-
-
0.029
ferric leghemoglobin
-
-
2.73 - 17.82
formaldoxime
0.9 - 16.93
glycerol trinitrate
0.027
H-protein
-
-
-
3.24
Hydroxylamine hydrochloride
-
in 50 mM Tris-HCl buffer (pH 7.6), at 37°C
0.05 - 16
Lipoamide
2.9 - 120
lipoate
2.1 - 2.15
lipoic acid
0.037 - 1.83
NAD+
0.00315 - 84
NADH
0.35
NADPH
-
recombinant DiaA
2.6
nicotinamide hypoxanthine dinucleotide
-
-
0.5
Nitro blue tetrazolium
-
recombinant DiaA
0.0005
NO
-
nitric oxide reduction, pH 7.5
0.3 - 0.48
pyruvate
0.5
R,S-lipoamide
-
-
-
0.42 - 5.48
S-nitroso-N-acetylpenicillamine
0.12 - 0.44
S-nitrosoglutathione
0.84 - 2.26
sodium nitroprusside
0.036
thio-NAD+
-
reaction with NADH
0.11
thio-NADH
-
-
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
108
1,4-benzoquinone
Streptomyces seoulensis
-
-
190
2,6-dimethyl-1,4-benzoquinone
Mycobacterium tuberculosis
-
pH 7.5, 25°C
6 - 1032
Dihydrolipoamide
220
DL-lipoylpentanoate
Mycobacterium tuberculosis
-
pH 7.5, 25°C
345
H-protein
Pisum sativum
-
-
-
14.4 - 649
Lipoamide
70
lipoic acid
Streptomyces seoulensis
-
-
6.75 - 574
NAD+
19.8 - 448
NADH
0.25
O2
Mycobacterium tuberculosis
-
pH 7.5, 25°C
190
R,S-lipoamide
Pisum sativum
-
-
-
72 - 300
ubiquinone
additional information
additional information
-
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.023
Dihydrolipoamide
-
pH 7.0, 30°C
0.29 - 0.8
diphenyleneiodonium chloride
0.0488 - 0.8793
Lipoamide
0.000865
N-[2-(2,4-dichlorophenyl)ethyl]-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl]acetamide
pH and temperature not specified in the publication
0.001 - 0.11
NADH
1.43
valproyl-CoA
-
-
1.6
valproyl-dephosphoCoA
-
-
additional information
additional information
-
Zn2+ inhibition kinetics and mechanism
-
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.002
2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl]-N-[3-(trifluoromethyl)benzyl]acetamide
Mycobacterium tuberculosis
P9WHH8
pH and temperature not specified in the publication
0.00196
diisopropyl fluorophosphate
Homo sapiens
-
-
0.59 - 3.31
diphenyleneiodonium chloride
0.0009
N-[2-(2,4-dichlorophenyl)ethyl]-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl]acetamide
Mycobacterium tuberculosis
P9WHH8
pH and temperature not specified in the publication
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.002
-
purified enzyme in absence of Zn2+
0.05
-
purified enzyme in presence of Zn2+
0.17
substrate 5,5'-dithiobis-(2-nitrobenzoic acid), 30°C, pH 6.5
0.19
-
substrate 5,5'-dithiobis-(2-nitrobenzoic acid), 30°C, pH 6.5
0.344
cell lysate, in 50 mM potassium phosphate buffer, pH 6.7, at 37°C
0.36
purified DLDH
0.5
-
metmyoglobin reduction, in absence of methylene blue, pH 7.5
0.6
-
O2 reduction, pH 6.0
0.8
-
cytochrome c reduction, in absence of methylene blue, pH 7.5
1.7
-
lipoic acid reduction, pH 6.0
2.5
crude extract, in the presence of 0.2 mM NAD+, in 50 mM potassium phosphate buffer (pH 6.0), at 25°C
3.6
-
pH 7.0, 30°C, mutant enzyme E423Q, assay in the absence of KCI
4.5
-
metmyoglobin reduction, in presence of methylene blue, pH 7.5
4.6
-
pH 7.0, 30°C, mutant enzyme E423A, assay in the absence of KCI
4.7
substrate alpha-lipoic acid, 30°C, pH 6.5
4.9
-
pH 7.0, 30°C, mutant enzyme E423D, assay in the absence of KCI
5
-
pH 7.0, 30°C, mutant enzyme E423S, assay in the absence of KCI
5.6
-
pH 7.0, 30°C, wild-type enzyme, assay in the absence of KCI
5.8
-
pH 7.0, 30°C, mutant enzyme E423S, assay in the presence of 2 M KCI
6.2
-
pH 7.0, 30°C, mutant enzyme E423A, assay in the presence of 2 M KCI
6.65
19.3fold purified enzyme, in 50 mM potassium phosphate buffer, pH 6.7, at 37°C
7.2
-
2,6-dichlorophenolindophenol reduction, pH 6.0
7.8
-
substrate alpha-lipoic acid, 30°C, pH 6.5
16.2
-
pH 7.0, 30°C, mutant enzyme E423D, assay in the presence of 2 M KCI
16.6
-
purified recombinant mutant D473L
19.1
-
pH 7.0, 30°C, wild-type enzyme, assay in the presence of 2 M KCI
22.4
-
purified enzyme, at pH 6.5 and 25°C
24
-
pH 8.0, 37°C
40
Azotobacter agilis
-
-
59.2
after 23.9fold purification, in the presence of 0.2 mM NAD+, in 50 mM potassium phosphate buffer (pH 6.0), at 25°C
62
-
enzyme from chloroplast
83.06
lipoamide reduction
90.2
-
-
100
substrate alpha-lipoamide, 30°C, pH 6.5
110
-
substrate alpha-lipoamide, 30°C, pH 6.5
143.1
-
mutant N286Q
154
-
lipoamide reduction, pH 6.0
179.6
-
mutant N286D
210
-
nitric oxide reduction, pH 6.0
280
-
purified recombinant mutant T44V enzyme
283.1
-
mutant D320N
295
-
mitochondrial enzyme
400
-
about, purified recombinant enzyme
586.5
-
wild-type
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5 - 6
-
reduction of nitric oxide, lioamide, lipoic acid, and 2,6-dichlorophenolindophenol
5.5
-
optimum in absence of Zn2+
5.8
monomeric enzyme
6.2
-
NADH-lipoamide oxidoreductase activity
6.4
-
reduction of lipoamide
7 - 7.5
50 mM phosphate buffer
7
-
assay at
7 - 7.5
-
assay at
7.2
-
NADH-dependent reduction of lipoamide
8.3
-
in the reverse reaction
additional information
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4.5 - 8
-
-
5 - 10
-
pH 5.0: about 10% of maximal activity, pH 7.0-7.5: 60-70% of maximal activity, pH 8.0-8.5: 90% of maximal activity, pH 10.0: 10% of maximal activity in carbonate buffer
5 - 8
-
nitric oxide reduction
5.5 - 7.5
-
pH 5.5: about 75% of maximal activity, pH 7.5: about 40% of maximal activity, NADH-lipoamide oxidoreductase activity
6 - 7
high activity in a pH range of 6.0 to 7.0
6.5 - 8.5
-
pH 6.5: about 40% of maximal activity, pH 8.5: about 50% of maximal activity
7.5 - 8.8
-
pH 7.5: about 50% of maximal activity, pH 8.8: about 60% of maximal activity, dihydrolipoamide-NAD+ oxidoreductase activity
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
20
-
assay at
55
NADH:lipoamide oxidoreductase activity
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
assays are performed at 4°C and at 25°C
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.3
isoelectric focusing
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
enzyme form FlbR-2
Manually annotated by BRENDA team
-
enzyme is not detected on Western blots probed with antibodies that recognize mitochondrial dihydrolipoamide dehydrogenase
Manually annotated by BRENDA team
-
-
Manually annotated by BRENDA team
additional information
-
both genes are transcribed during erythrocytic development of the parasite
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
associated to the matrix, release of enzyme during acrosomal exocytosis
-
Manually annotated by BRENDA team
-
isozyme aLipDH
Manually annotated by BRENDA team
-
juxtanuclear localization, like Golgi, in spermatids
Manually annotated by BRENDA team
additional information
PDB
SCOP
CATH
ORGANISM
UNIPROT
Escherichia coli (strain K12)
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Neisseria meningitidis serogroup B (strain MC58)
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Pseudomonas aeruginosa (strain UCBPP-PA14)
Pseudomonas aeruginosa (strain UCBPP-PA14)
Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Rhizobium meliloti (strain 1021)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
18000
-
native protein using SDS-PAGE
24980
-
predicted from cDNA
28000
-
recombinant protein using SDS-PAGE, in good agreement with the calculated molecular weight of recombinant DiaA
28206
-
x * 28206, sequence analysis
28430
-
x * 28430, sequence analysis
43000
-
sequence analysis
45000
2 * 45400, sequence analysis, 2 * 45000, SDS-PAGE
45400
2 * 45400, sequence analysis, 2 * 45000, SDS-PAGE
46000
-
x * 46000, SDS-PAGE
49342
-
x * 49342, electrospray mass spectrometry
49690
-
x * 49690, calculation from nucleotide sequence
49757
-
x * 49757, mitochondrial enzyme, electrospray mass spectrometry
49912
2 * 49912, calculated from amino acid sequence
50027
x * 50027, MW only of protein, flavin is reduced during analysis, electrospray MS analysis
50070
-
enzyme including the bound FAD
50216
-
2 * 50216, amino acid sequence calculation
51000
-
2 * 51000, SDS-PAGE
51274
-
x * 51274, calculation from nucleotide sequence
52614
-
x * 52614, enzyme from chloroplast, electrospray mass spectrometry
57000
x * 57000, SDS-PAGE, His-tagged recombinant protein
57200
-
2 * 57200, mitochondrial enzyme, SDS-PAGE and gel filtration, 2 * 75600, apicoplast enzyme, SDS-PAGE and gel filtration
59000
-
x * 59000, SDS-PAGE
60000
-
2 * 60000, SDS-PAGE
61000
-
x * 61000, SDS-PAGE
61600
-
full-length recombinant DLDH, sequence analysis
63489
-
x * 63489, calculated
66500
-
x * 66500, SDS-PAGE
75600
-
2 * 57200, mitochondrial enzyme, SDS-PAGE and gel filtration, 2 * 75600, apicoplast enzyme, SDS-PAGE and gel filtration
86000
-
native form of recombinant DiaA, gel filtration
88000
-
gel filtration
98000
-
gel filtration
100000
-
equilibrium sedimentation
102000
105000
107000
blue native PAGE
110000
112000
115000
117000
-
gel filtration
118000
-
gel filtration
119000
120000
-
gel filtration
125000
-
LPD-Glc, gel filtration
SUBUNITS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
homodimer
monomer
1 * 54000, only present and active at pH 5.8
tetramer
present at pH 5.8 and 7.5, active at pH 7.5
trimer
-
gel filtration, 3 * 28000 Da
additional information
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
phosphoprotein
additional information
-
the apicoplast isozyme contains a potential transit peptide, the mitochondrial isozyme contains targeting sequence
Crystallization/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
crystals are grown from droplets of 0.002 ml of protein solution at 15 mg/ml and 0.002 ml of reservoir solution containing 10-20% polyethylene glycol 6000, 200 mM diammonium citrate, and 1 mM sodium azide
-
hanging drop vapour diffusion method
-
alone or in complex with inhibitor N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamide, hanging drop vapor diffusion method, using 100 mM Tris (pH 8.5), 10 mM NaCl, 11% (w/v) polyethylene glycol 10000, and 15% (v/v) ethylene glycol
hanging drop vapour diffusion method
crystallization by dialysis
-
best results obtained by vapour diffusion method, three-dimensional structure at 2.8 A resolution
-
crystallized by hanging-drop vapor-diffusion method
-
pH STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6 - 11
-
enzyme loses its activity completely below pH 6 and above pH 11
702739
6 - 9
retains about half of the initial activity
691392
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4
-
activity is completely lost after 1 month
40
-
recombinant enzyme is stable at 30°C upon 30 min of incubation without substrates, but incubation at 40°C and higher temperatures inactivated enzyme activity
55 - 70
the remaining activity after thermal treatment at pH 7.0 for 15 min is 90% at 55°C, 80% at 60°C, 70% at 65 °C, and 45% at 70°C
60
the enzyme maintains some activity after a 30-min incubation
75
-
50% loss of activity after 15 min, 50% loss of activity after 20 min in presence of NAD+, 50% loss of activity after less than 1 min in presence of dihydrolipoamide
80
-
6 min, 50% loss of activity
86
-
melting temperature
additional information
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
no loss of activity when the enzyme is frozen at -20°C, and thawed three times
stable to trypsin treatment
-
trypsin or papain, treatment with 0.019 mg/ml protease
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
-20°C, 6 months, about 10% loss of activity
-
-20°C, 6 months, about 60% loss of activity
-
-20°C, stable for at least 6 months
-
-20°C, stable for several months
-
4°C or -20°C, stable for at least 1 month
purified recombinant enzyme, -20°C, 100 mM potassium phosphate, 100 mM KCl, pH 7.0, 1 mM EDTA, 50% v/v glycerol, stable for at least 1 year
-
stable for months if stored in liquid nitrogen
-
Purification/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
affinity chromatography on propyllipoamide-glass columns
ammonium sulfate precipitation
-
ammonium sulfate precipitation and Ni-NTA agarose column chromatography
Starkeyomyces koorchalomoides
-
by gel filtration
DEAE-Toyopearl 650 M column chromatography, butyl-Toyopearl 650 M column chromatography, and TSK-gel G3000SW gel filtration
dissociation of the lipoamide dehydrogenase component from the branched-chain alpha-keto acid dehydrogenase complex during purification
-
enzmye from culture supernatant of Clostridium kluyveri is purified using a DEAE-toyopearl column and a TSK-GEL G-3000 column. Recombinant protein is purified using a HiTrap chelating HP column
-
from pyruvate dehydrogenase complex
further purification of the commercial preparation
-
further purification of the commercial preparation by gel filtration
-
gel filtration
gel filtration, at least 90% pure
-
gel filtration; wild-type and mutant proteins, highly purified
-
HiTrap Q column chromatography
-
metal-affinity chromatography and Superdex 200 gel filtration chromatography
Ni-NTA agarose column chromatography, gel filtration
-
Ni-NTA column chromatography
Ni-NTA resin column chromatography and gel filtration
-
Ni-NTA-agarose resin column chromatography and Superdex 200 gel filtration
nickel iminodiacetic acid Sepharose 6B column chromatography
-
partially
-
presence of dithiothreitol during purification preserves enzymatic activity
-
purified from strain ASKA clone (-) JW0112
B1IQM4
purified using copper-based metal ion affinity chromatography in the presence of 2 M KCl
-
recombinant D473L mutant from Escherichia coli to homogeneity
-
recombinant enzyme
-
recombinant His-tagged E3 wild-type and mutant proteins
-
recombinant His-tagged truncated isozymes from Escherichia coli by nickel affinity chromatography to 98% homogeneity
-
recombinant mutant T44V from Escherichia coli strain XL1-Blue
-
Sephacryl S-100 column gel filtration
-
Sephadex G-25 column gel filtration
Strep-Tactin Sepharose column chromatography
-
Superdex HR-200 gel filtration
-
wild-type and mutant enzymes K37E, H452Q and E457Q
-
wild-type and mutant enzymes K54E, S53K54-K53S54 and E192Q
-
wild-type DLD and mutants purified by nickel affinity chromatography. C-term DLD purified to near homogeneity by a five-step procedure
-
Cloned/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
bfmBC gene encoding DLD. Ligated into vector pCR2.1, and introduced into Escherichia coli DH5alpha. Insert DNA recovered from the recombinant plasmid ligated into vector pET-28a(+), yielding pET-bfmBC and expressed in Escherichia coli BL21 (DE3)
dihydrolipoamide dehydrogenase component of the pyruvate dehydrogenase multienzyme complex, expression in Escherichia coli
-
DNA and amino acid sequence determination and analysis of both lipdh genes using RT-PCR, expression of the mitochondrial isozyme as GFP-fusion protein giving green fluorescence and of the apicoplast isozyme fused to acyl-carrier-protein resulting in red fluorescence, expression of truncated mitochondrial and apicoplastic isozymes lacking the putative target sequences as His-tagged proteins in Escherichia coli strain BL21-RIL(DE3), the apicoplast isozyme is expressed at very low levels
-
expressed in Escherichia coli
expressed in Escherichia coli as a recombinant protein
-
expressed in Escherichia coli BL21 cells
-
expressed in Escherichia coli BL21(DE3)
expressed in Escherichia coli BL21(DE3) cells
expressed in Escherichia coli BL21(DE3) Codon Plus RLI cells
expressed in Escherichia coli JM109 cells
expressed in Escherichia coli JM83 cells
-
expressed in Escherichia coli M109(lambdaDE3)
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expressed in Escherichia coli M15 cells
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expressed in Escherichia coli M15pREP4 cells
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expressed in Escherichia coli strain JRG 1342
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expressed in Escherichia coli using the cytoplasmic expression vectors, pET3a and pET3d. Expressed as inclusion bodies and refolded by solubilisation in 8 M urea followed by dilution into a buffer containing 2 M KCl, 0.010 mM FAD, 1 mM NAD+, and 0.3 mM GSSG/3 mM GSH
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expressed in Escherichia coli XL1-Blue
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expressed in Escherichia coli; His-tagged wild-type and mutant proteins overexpressed in Escherichia coli
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expression in a strain of Haloferax volcanii lacking dihydrolipoamide dehydrogenase activity
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expression in Escherichia coli
expression in Escherichia coli or in Corynebacterium glutamicum, the cloned gene is expressed in Corynebacterium glutamicum cells harbouring the gene on a plasmid shows 12fold higher specific LPD activity when compared to the wild-type strain
expression in Escherichia coli strain JRG 1342
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expression of D473L mutant in Escherichia coli strain XL1-Blue
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expression of mutant T44V in Escherichia coli strain XL1-Blue
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into vector pET101/D TOPO and expressed in Escherichia coli BL21(DE3)
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ligated into vector pET-28a(+) and expressed in Escherichia coli BL21(DE3) as an N-terminal 6 x His-tag
mutants cloned into pQE-9 vector
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Mycobacterium smegmatis over-expressing LpdC protein
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overexpressed in the parent organism by using the halophilic archaeal rRNA promoter
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overexpression in Escherichia coli
wild-type and mutant enzymes K37E, H452Q and E457Q; wild-type and mutant enzymes K37E, H452Q and E457Q, overexpression in Escherichia coli
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wild-type and mutant enzymes K54E, S53K54-K53S54 and E192Q, overexpression in Escherichia coli
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wild-type DLD and mutant D444V expressed in Escherichia coli BL21 with an N-terminal six-histidine tag. C-term DLD, the interface domain residing the proteolytic activity of DLD, expressed in Escherichia coli without any tags
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ENGINEERING
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
C44S
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0.003% of the activity of wild-type enzyme with NAD+ and dihydrolipoamide. Enzyme is capable to catalyze reactions with NADH as electron donor and ferricyanide, thio-NAD+, 2,6-dichlorophenol indophenol and O2 as electron acceptor. The fluorescence of FAD in oxidized wild-type enzyme is markedly temperature dependent, while the fluorescence of FAD in mutants C44S and C49S is independent of temperature
C49S
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0.012% of the activity of wild-type enzyme with NAD+ and dihydrolipoamide. Enzyme is capable to catalyze reactions with NADH as electron donor and ferricyanide, thio-NAD+, 2,6-dichlorophenol indophenol and O2 as electron acceptor. The fluorescence of FAD in oxidized wild-type enzyme is markedly temperature dependent, while the fluorescence of FAD in mutants C44S and C49S is independent of temperature
K53R
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spectral and redox properties of FAD in the mutant enzyme as well as the interaction of the flavin with bound NAD+ are profoundly affected by the mutation, K53R does not catalyze either the dihydrolipoamide-NAD+ or the NADH-lipoamide reactions except at very low concentrations of reducing substrate. The absorbance spectrum in the visible and near-ultraviolet is little changed from that of wild-type enzyme, in contrast to wild-type enzyme the spectrum of K53R is sensitive to pH. Unlike the wild-type enzyme, the binding of beta-NAD+ to K53R alters the spectrum
E354K
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is significantly less sensitive to NADH inhibition than the native LPD
H322Y
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upon purification LPD loses activity and associated FAD at the gel filtration step
E423A
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in 2 M KCl, the mutant is significantly less active than wild-type, decreased Km value for dihydrolipoamide. The mutant enzyme is not significantly activated by high salt concentrations. In the presence of 2 M KCI the thermal stability of the mutant enzyme is slightly higher than that of the wild-type enzyme
E423D
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wild-type and E423D mutant enzyme are much less active in the absence of KCl than in its presence. The mutant enzyme is inactivated at temperatures around 20°C lower than the wild-type
E423Q
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in 2 M KCl, the mutant is significantly less active than wild-type, whereas Km, differences are not significant. The mutant enzyme is not significantly activated by high salt concentrations. In the presence of 2 M KCI the thermal stability of the mutant enzyme is slightly higher than that of the wild-type enzyme
E423S
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in 2 M KCl, the mutant is significantly less active than wild-type, whereas Km, differences are not significant. The mutant enzyme is not significantly activated by high salt concentrations. In the presence of 2 M KCI the thermal stability of the mutant enzyme is slightly higher than that of the wild-type enzyme
E423A
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in 2 M KCl, the mutant is significantly less active than wild-type, decreased Km value for dihydrolipoamide. The mutant enzyme is not significantly activated by high salt concentrations. In the presence of 2 M KCI the thermal stability of the mutant enzyme is slightly higher than that of the wild-type enzyme
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E423D
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wild-type and E423D mutant enzyme are much less active in the absence of KCl than in its presence. The mutant enzyme is inactivated at temperatures around 20°C lower than the wild-type
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E423Q
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in 2 M KCl, the mutant is significantly less active than wild-type, whereas Km, differences are not significant. The mutant enzyme is not significantly activated by high salt concentrations. In the presence of 2 M KCI the thermal stability of the mutant enzyme is slightly higher than that of the wild-type enzyme
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E423S
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in 2 M KCl, the mutant is significantly less active than wild-type, whereas Km, differences are not significant. The mutant enzyme is not significantly activated by high salt concentrations. In the presence of 2 M KCI the thermal stability of the mutant enzyme is slightly higher than that of the wild-type enzyme
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A1444G
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substitution located in exon 13 leading to 20% of wild type activity
C45S
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Ser-45 mutant is highly purified, shows 5270fold lower activity than wild-type enzyme. Destroyed disulfide bond between Cys-45 and Cys-50 of the active disulfide center in human E3. UV-visible spectrum of the Ser-45 mutant is similar to that of the reduced form of the enzyme and the second fluorescence emission of the mutant disappears
C45Y
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purification of the Tyr-45 mutant is not successful. Recombinant human E3 becomes too unstable to be easily obtained from Escherichia coli
D320N
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48.60% specific activity of the wild type enzyme, 82.7% of FAD content compared to that of the wild-type enzyme; specific activity is 48.6% to that of the wild-type E3. About 82.7% of FAD content compared to that of wild-type E3. Forms the dimer
D413A
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the mutant shows 85% activity in the forward reaction and 79% activity in the reverse reaction compared to the wild type enzyme
D413N
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the mutant shows 119% activity in the forward reaction and 96% activity in the reverse reaction compared to the wild type enzyme
D473L
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site-directed mutagenesis, mutant shows about 37fold decreased activity and small conformational changes compared to the wild-type enzyme
E192Q
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specific activity is markedly decreased, less than 5% of the wild-type activity, Km-values for lipoamide and dihydrolipoamide are markedly reduced
E431A
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exhibits very similar expression levels and purification yields as the wild-type, but abolishes the proteolytic activity
E457Q
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molar ratio of FAD to enzyme is 0.9 compared to 1 for the wild-type enzyme, mutation affects the environment surrounding FAD, decrease in efficiency of electron transfer from the reduced flavin to the oxidized substrate
G194C
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mutation affecting the ability of FAD, NAD+, or NADH to bind to E3
H348A
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the mutant shows 60% activity in the forward reaction and 66% activity in the reverse reaction compared to the wild type enzyme
H348L
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the mutant shows 65% activity in the forward reaction and 74% activity in the reverse reaction compared to the wild type enzyme
H450A
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shows an increase in proteolytic activity as compared with the wild-type
H452Q
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molar ratio of FAD to enzyme is 0.94 compared to 1 for the wild-type enzyme, no production of NADH when the enzyme is reduced by dihydrolipoamide, transfer of electrons from the substrate dihydrolipoamide to NAD+ is extremely low
I358T
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mutation affecting the ability of FAD, NAD+, or NADH to bind to E3
I51A
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mutant with about 100fold reduced activity compared to the wild type enzyme
K54E
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about 25% less bound FAD compared to wild-type, specific activity is markedly decreased, less than 5% of the wild-type activity, Km-value for lipoamide is increased by about twofold
M326V
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mutation affecting the ability of FAD, NAD+, or NADH to bind to E3
N286D
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30.84% specific activity of the wild type enzyme, 96% of FAD content compared to that of the wild-type enzyme; specific activity is 30.84% to that of the wild-type E3. About 96.0% of FAD content compared to that of wild-type E3. Forms the dimer
N286Q
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24.57% specific activity of the wild type enzyme, 99.4% of FAD content compared to that of the wild-type enzyme; specific activity is 24.57% to that of the wild-type E3. About 99.4% of FAD content compared to that of wild-type E3. Forms the dimer
P325A
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mutation of highly conserved resdue in the central domain, about 150fold decrease in kcat value
P453L
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causes E3 deficiency
P453V
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1650fold lower specific activity compared to the wild type enzyme
R281K
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specific activity is 11.93% to that of wild-type E3. FAD-content is about 93% that of wild-type E3. Kcat of forward reaction is decreased dramatically. Substitution has no effect in the self-dimerization
R281N
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specific activity is 12.50% to that of wild-type E3. FAD-content is about 96% that of wild-type E3. Kcat of forward reaction is decreased dramatically. Substitution has no effect in the self-dimerization
R447A
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the mutant shows 110% activity in the forward reaction and 122% activity in the reverse reaction compared to the wild type enzyme
R447G
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missense mutation, expressed at 28ºC the mutant exhibits essentially wild-type E3 activity, at 37°C the activity is reduced to 28% of that of the wild type enzyme
S456A
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exhibits very similar expression levels and purification yields as the wild-type, but abolishes the proteolytic activity
S456A/D444V
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low levels of residual activity
S53K/K54S
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about 25% less bound FAD compared to wild-type, specific activity is markedly decreased, less than 5% of the wild-type activity, Km-values for lipoamide and dihydrolipoamide are markedly reduced. The catalytic rate constant, turnover number/Km, is significantly lower than wild-type
T148G
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specific activity is 76.34% to that of wild-type E3. FAD-content is about 710% that of wild-type E3. Substitution has no effect in the self-dimerization
T148S
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specific activity is 88.62% to that of wild-type E3. FAD-content is about 92% that of wild-type E3. Substitution has no effect in the self-dimerization
T44V
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site-directed mutagenesis, mutation of Thr44 of the FAD-binding region to Val, corresponding to the prokaryotic sequence, results in 2.2fold reduced activity with a slightly different microenvironment at the FAD-binding site
W366A
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mutation of highly conserved residue. kinetic parameters similar to wild-type
Y438A
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the mutant shows 100% activity in the forward reaction and 91% activity in the reverse reaction compared to the wild type enzyme
Y438F
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the mutant shows 100% activity in the forward reaction and 112% activity in the reverse reaction compared to the wild type enzyme
Y438H
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the mutant shows 99% activity in the forward reaction and 92% activity in the reverse reaction compared to the wild type enzyme
A181V
the mutant is not inhibited by N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid compared to the wild type enzyme
A290R
the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
D5A
4.3% activity of the wild type enzyme
E91A
49.6% activity of the wild type enzyme
E91K
62.5% activity of the wild type enzyme
F269R
the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
F464A
5% activity of the wild type enzyme
G312A/L313G/L314P/Q315M
the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
H386A
20% activity of the wild type enzyme
H386K
9% activity of the wild type enzyme
H460E
69.4% activity of the wild type enzyme
H98A
3.3% activity of the wild type enzyme
K103E
17.7% activity of the wild type enzyme
K105A
44.7% activity of the wild type enzyme
K216A
58.3% activity of the wild type enzyme
K220A
81.2% activity of the wild type enzyme
K223A
67.1% activity of the wild type enzyme
K223E
70.5% activity of the wild type enzyme
K224A
55.2% activity of the wild type enzyme
K376A
52.2% activity of the wild type enzyme
K67A
67.3% activity of the wild type enzyme
K67E
64.3% activity of the wild type enzyme
K88E
74.8% activity of the wild type enzyme
L314P
the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
N209V
the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
N43A
11% activity of the wild type enzyme
R147T
the mutant is more sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
R347S
the mutant is not inhibited by N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid compared to the wild type enzyme
R93A
6.5% activity of the wild type enzyme
R93E
3.6% activity of the wild type enzyme
A181V
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the mutant is not inhibited by N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid compared to the wild type enzyme
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A290R
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the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
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F269R
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the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
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N209V
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the mutant is less sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
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R147T
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the mutant is more sensitive to N-(2,4-dichlorophenethyl)-2-[8-(2,4-dimethoxybenzoyl)-4-oxo-1-phenyl-1,3,8-triazaspiro-[4.5]decan-3-yl]acetamid than the wild type enzyme
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K43A
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unable to express the mutant protein
K43R
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expresses well, but still has lipoic acid attached
additional information
Renatured/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
inactivation of the enzyme by guanidine-HCl is reversible by its removal
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APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
analysis
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development of a blue native-PAGE-based method for isolation of enzymatically active DLDH from animal tissues and visualization as well as quantification of its diaphorase activity using the NADH/nitroblue tetrazolium detection system
degradation
medicine
additional information
Show AA Sequence (22178 entries)
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