Reference on EC 1.7.2.1 - nitrite reductase (NO-forming)
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Hole, U.H.; Vollack, K.U.; Zumft, W.G.; Eisenmann, E.; Siddiqui, R.A.; Friedrich, B.; Kroneck, P.M.H.
Characterization of the membranous denitrification enzymes nitrite reductase (cytochrome cd1) and copper-containing nitrous oxide reductase from Thiobacillus denitrificans
Arch. Microbiol.
165
55-61
1996
Thiobacillus denitrificans
Sann, R.; Kostka, S.; Friedrich, B.
A cytochrome cd1-type nitrite reductase mediates the first step of denitrification in Alcaligenes eutrophus
Arch. Microbiol.
161
453-459
1994
Cupriavidus necator
Silvestrini, M.C.; Falcinelli, S.; Ciabatti, I.; Cutruzzola, F.; Brunori, M.
Pseudomonas aeruginosa nitrite reductase (or cytochrome oxidase): an overview
Biochimie
76
641-654
1994
Alcaligenes faecalis, Paracoccus denitrificans, Halomonas halodenitrificans, Paracoccus pantotrophus, Pseudomonas aeruginosa, Pseudomonas stutzeri, Thiobacillus denitrificans
Silvestrini, M.C.; Tordi, M.G.; Citro, G.; Vecchini, P.; Brunori, M.
Monomeric Pseudomonas aeruginosa nitrite reductase: preparation, characterization, and kinetic properties
J. Inorg. Biochem.
57
169-181
1995
Pseudomonas aeruginosa
Yamazaki, T.; Oyanagi, H.; Fujiwara, T.; Fukumori, Y.
Nitrite reductase from the magnetotactic bacterium Magnetospirillum magnetotacticum. A novel cytochrome cd1 with Fe(II):nitrite oxidoreductase activity
Eur. J. Biochem.
233
665-671
1995
Magnetospirillum magnetotacticum, Pseudomonas aeruginosa
Besson, S.; Carneiro C.; Moura, J.J.; Moura, I.; Fauque, G.
A cytochrome cd1-type nitrite reductase isolated from the marine denitrifier Pseudomonas nautica 617: purification and characterization
Anaerobe
1
219-226
1995
Pseudomonas nautica 617
Schichman, S.A.; Meyer, T.E.; Gray, H.B.
Kinetics of electron transfer in Pseudomonas aeruginosa cytochrome cd1-nitrite reductase
Inorg. Chim. Acta
243
25-31
1996
Pseudomonas aeruginosa
-
Calmels, S.; Ohshima, H.; Henry, Y.; Bartsch, H.
Characterization of bacterial cytochrome cd(1)-nitrite reductase as one enzyme responsible for catalysis of nitrosation of secondary amines
Carcinogenesis
17
533-536
1996
Pseudomonas aeruginosa, Pseudomonas stutzeri
Cutruzzola, f.; Arese, M.; Grasso, S.; Bellelli, A.; Brunori, M.
Mutagenesis of nitrite reductase from Pseudomonas aeruginosa: tyrosine-10 in the c heme domain is not involved in catalysis
FEBS Lett.
412
365-369
1997
Pseudomonas aeruginosa
Hartig, E.; Zumft, W.G.
Kinetics of nirS expression (cytochrome cd1 nitrite reductase) in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate- and nitrite-responsive regulatory system
J. Bacteriol.
181
161-166
1999
Pseudomonas stutzeri
Ferguson, S.J.; Fulop, V.
Cytochrome cd1 nitrite reductase: structure raises interesting mechanistic questions
Subcell. Biochem.
35
519-540
2000
Paracoccus pantotrophus, Pseudomonas aeruginosa
Cutruzzola, F.; Brown, K.; Wilson, E.K.; Bellelli, A.; Arese, M.; Tegoni, M.
The nitrite reductase from Pseudomonas aeruginosa: essential role of two active-site histidines in the catalytic and structural properties
Proc. Natl. Acad. Sci. USA
98
2232-2237
2001
Pseudomonas aeruginosa (P24474)
Lopes, H.; Besson, S.; Moura, I.; Moura, J.J.
Kinetics of inter- and intramolecular electron transfer of Pseudomonas nautica cytochrome cd1 nitrite reductase: regulation of the NO-bound end product
J. Biol. Inorg. Chem.
6
55-62
2001
Pseudomonas nautica 617
Allen, J.W.; Higham, C.W.; Zajicek, R.S.; Watmough, N.J.; Ferguson, S.J.
A novel, kinetically stable, catalytically active, all-ferric, nitrite-bound complex of Paracoccus pantotrophus cytochrome cd1
Biochem. J.
366
883-888
2002
Paracoccus pantotrophus
Richter, C.D.; Allen, J.W.A.; Higham, C.W.; Koppenhofer, A.; Zajicek, R.S.; Watmough, N.J.; Ferguson, S.J.
Cytochrome cd1, reductive activation and kinetic analysis of a multifunctional respiratory enzyme
J. Biol. Chem.
277
3093-3100
2002
Paracoccus pantotrophus
Reutov, V.P.; Sorokina, E.G.
NO-Synthase and nitrite-reductase components of nitric oxide cycle
Biochemistry (Moscow)
63
874-884
1998
Paracoccus denitrificans, Pseudomonas aeruginosa
Michalski, W.P.; Nicholas, D.J.D.
Molecular characterization of a copper-containing nitrite reductase from Rhodopseudomonas sphaereoides forma sp. denitrificans
Biochim. Biophys. Acta
828
130-137
1985
Cereibacter sphaeroides
-
Masuko, M.; Iwasaki, H.; Sakurai, T.; Suzuki, S.; Nakahara, A.
Effects of freezing on purified nitrite reductase from a denitrifier, Alcaligenes sp. NCIB 11015
J. Biochem.
98
1285-1291
1985
Alcaligenes sp.
Masuko, M.; Iwasaki, H.; Sakurai, T.; Suzuki, S.; Nakahara, A.
Characterization of nitrite reductase from a denitrifier, Alcaligenes sp. NCIB 11015. A novel copper protein
J. Biochem.
96
447-454
1984
Alcaligenes sp.
Lam, Y.; Nicholas, D.J.D.
A nitrite reductase with cytochrome oxidase activity from Micrococcus denitrificans
Biochim. Biophys. Acta
180
459-472
1969
Paracoccus denitrificans
Miyata, M.; Mori, T.
Studies on denitrification. X. The denitrifying enzyme as a nitrite reductase and the electron donating system for denitrification
J. Biochem.
66
463-471
1969
Pseudomonas denitrificans (nom. rej.)
Prudencio, M.; Eady, R.R.; Sawers, G.
The blue copper-containing nitrite reductase from Alcaligenes xylosoxidans: cloning of the nirA gene and characterization of the recombinant enzyme
J. Bacteriol.
181
2323-2329
1999
Achromobacter xylosoxidans
Ichiki, H.; Tanaka, Y.; Mochizuki, K.; Yoshimatsu, K.; Sakurai, T.; Fujiwara, T.
Purification, characterization, and genetic analysis of Cu-containing dissimilatory nitrite reductase from a denitrifying halophilic archaeon, Haloarcula marismortui
J. Bacteriol.
183
4149-4156
2001
Achromobacter xylosoxidans, Fusarium oxysporum, Haloarcula marismortui, Haloferax denitrificans, Achromobacter cycloclastes (P25006)
Prudencio, M.; Eady, R.R.; Sawers, G.
Catalytic and spectroscopic analysis of blue copper-containing nitrite reductase mutants altered in the environment of the type 2 copper centre: implications for substrate interaction
Biochem. J.
353
259-266
2001
Achromobacter xylosoxidans
Prudencio, M.; Sawers, G.; Fairhurst, S.A.; Yousafzai, F.K.; Eady, R.R.
Alcaligenes xylosoxidans dissimilatory nitrite reductase: alanine substitution of the surface-exposed histidine 139 ligand of the type 1 copper center prevents electron transfer to the catalytic center
Biochemistry
41
3430-3438
2002
Achromobacter xylosoxidans
Zhao, Y.; Lukoyanov, D.A.; Toropov, Y.V.; Wu, K.; Shapleigh, J.P.; Scholes, C.P.
Catalytic function and local proton structure at the type 2 copper of nitrite reductase: the correlation of enzymatic pH dependence, conserved residues, and proton hyperfine structure
Biochemistry
41
7464-7474
2002
Cereibacter sphaeroides
Xie, Y.; Inoue, T.; Seike, N.; Matsumura, H.; Kanbayashi, K.; Itoh, K.; Kataoka, K.; Yamaguchi, K.; Suzuki, S.; Kai, Y.; Deligeer
Crystallization and preliminary x-ray crystallographic studies of dissimilatory nitrite reductase isolated from Hyphomicrobium denitrificans A3151
Acta Crystallogr. Sect. D
D60
2383-2386
2004
Hyphomicrobium denitrificans, Hyphomicrobium denitrificans A3151
Wijma, H.J.; Canters, G.W.; de Vries, S.; Verbeet, M.P.
Bidirectional catalysis by copper-containing nitrite reductase
Biochemistry
43
10467-10474
2004
Alcaligenes faecalis, Alcaligenes faecalis S-6
Farver, O.; Kroneck, P.M.; Zumft, W.G.; Pecht, I.
Intramolecular electron transfer in cytochrome cd(1) nitrite reductase from Pseudomonas stutzeri; kinetics and thermodynamics
Biophys. Chem.
98
27-34
2002
Pseudomonas stutzeri
Pinho, D.; Besson, S.; Brondino, C.D.; de Castro, B.; Moura, I.
Copper-containing nitrite reductase from Pseudomonas chlororaphis DSM 50135
Eur. J. Biochem.
271
2361-2369
2004
Pseudomonas chlororaphis
Zajicek, R.S.; Allen, J.W.; Cartron, M.L.; Richardson, D.J.; Ferguson, S.J.
Paracoccus pantotrophus NapC can reductively activate cytochrome cd1 nitrite reductase
FEBS Lett.
565
48-52
2004
Paracoccus pantotrophus
Pearson, I.V.; Page, M.D.; van Spanning, R.J.; Ferguson, S.J.
A mutant of Paracoccus denitrificans with disrupted genes coding for cytochrome c550 and pseudoazurin establishes these two proteins as the in vivo electron donors to cytochrome cd1 nitrite reductase
J. Bacteriol.
185
6308-6315
2003
Paracoccus denitrificans
Yousafzai, F.K.; Eady, R.R.
Dithionite reduction kinetics of the dissimilatory copper-containing nitrite reductase of Alcalegenes xylosoxidans. The SO2.- radical binds to the substrate binding type 2 copper site before the type 2 copper is reduced
J. Biol. Chem.
277
34067-34073
2002
Achromobacter xylosoxidans
Gordon, E.H.; Sjogren, T.; Lofqvist, M.; Richter, C.D.; Allen, J.W.; Higham, C.W.; Hajdu, J.; Fulop, V.; Ferguson, S.J.
Structure and kinetic properties of Paracoccus pantotrophus cytochrome cd1 nitrite reductase with the d1 heme active site ligand tyrosine 25 replaced by serine
J. Biol. Chem.
278
11773-11781
2003
Paracoccus pantotrophus
Kataoka, K.; Yamaguchi, K.; Kobayashi, M.; Mori, T.; Bokui, N.; Suzuki, S.
Structure-based engineering of Alcaligenes xylosoxidans copper-containing nitrite reductase enhances intermolecular electron transfer reaction with pseudoazurin
J. Biol. Chem.
279
53374-53378
2004
Achromobacter xylosoxidans
Deligeer; Fukunaga, R.; Kataoka, K.; Yamaguchi, K.; Kobayashi, K.; Tagawa, S.; Suzuki, S.
Spectroscopic and functional characterization of Cu-containing nitrite reductase from Hyphomicrobium denitrificans A3151
J. Inorg. Biochem.
91
132-138
2002
Hyphomicrobium denitrificans
Farver, O.; Kroneck, P.M.; Zumft, W.G.; Pecht, I.
Allosteric control of internal electron transfer in cytochrome cd1 nitrite reductase
Proc. Natl. Acad. Sci. USA
100
7622-7625
2003
Pseudomonas stutzeri, Pseudomonas stutzeri ZoBell / ATCC 14405
Arese, M.; Zumft, W.G.; Cutruzzola, F.
Expression of a fully functional cd1 nitrite reductase from Pseudomonas aeruginosa in Pseudomonas stutzeri
Protein Expr. Purif.
27
42-48
2003
Pseudomonas aeruginosa
Boulanger, M.J.; Murphy, M.E.
Directing the mode of nitrite binding to a copper-containing nitrite reductase from Alcaligenes faecalis S-6: characterization of an active site isoleucine
Protein Sci.
12
248-256
2003
Alcaligenes faecalis, Alcaligenes faecalis S-6
Sar, B.; Oishi, K.; Wada, A.; Hirayama, T.; Matsushima, K.; Nagatake, T.
Nitrite reductase from Pseudomonas aeruginosa released by antimicrobial agents and complement induces interleukin-8 production in bronchial epithelial cells
Antimicrob. Agents Chemother.
43
794-801
1999
Pseudomonas aeruginosa, Pseudomonas aeruginosa 5276
Hull, H.H.; Wharton, D.C.
Isoelectrophoretic characterization of Pseudomonas cytochrome oxidase/nitrite reductase and its heme d1-containing domain
Arch. Biochem. Biophys.
301
85-90
1993
Pseudomonas aeruginosa
Silvestrini, M.C.; Cutruzzola, F.; D'Alessandro, R.; Brunori, M.; Fochesato, N.; Zennaro, E.
Expression of Pseudomonas aeruginosa nitrite reductase in Pseudomonas putida and characterization of the recombinant protein
Biochem. J.
285
661-666
1992
Pseudomonas aeruginosa
Bellelli, A.; Brzezinski, P.; Arese, M.; Cutruzolla, F.; Silvestrini, M.C.
Electron transfer in zinc-reconstituted nitrite reductase from Pseudomonas aeruginosa
Biochem. J.
319
407-410
1996
Pseudomonas aeruginosa
-
Nurizzo, D.; Cutruzzola, F.; Arese, M.; Bourgeois, D.; Brunori, M.; Cambillau, C.; Tegoni, M.
Conformational changes occurring upon reduction and NO binding in nitrite reductase from Pseudomonas aeruginosa
Biochemistry
37
13987-13996
1998
Pseudomonas aeruginosa (P24474), Pseudomonas aeruginosa
Karapetian, A.V.; Kamalian, M.G.; Nalbandyan, R.M.
A copper-containing protein that inhibits nitrite reductase from Pseudomonas aeruginosa
FEBS Lett.
203
131-134
1986
Pseudomonas aeruginosa
Shimada, H.; Orii, Y.
The nitric oxide compounds of Pseudomonas aeruginosa nitrite reductase and their probable participation in the nitrite reduction
FEBS Lett.
54
237-240
1975
Pseudomonas aeruginosa
Coyne, M.S.; Arunakumari, A.; Pankratz, H.S.; Tiedje, J.M.
Localization of the cytochrome cd1 and copper nitrite reductases in denitrifying bacteria
J. Bacteriol.
172
2558-2562
1990
Pseudomonas aeruginosa, Pseudomonas fluorescens
Shimada, H.; Orii, Y.
Oxidation-reduction behavior of the heme c and heme d moieties of Pseudomonas aeruginosa nitrite reductase and the formation of an oxygenated intermediate at heme d1
J. Biochem.
80
135-140
1976
Pseudomonas aeruginosa
Shimada, H.; Orii, Y.
The pH-dependent reactions of Pseudomonas aeruginosa nitrite reductase with nitric oxide and nitrite
J. Biochem.
84
1553-1558
1978
Pseudomonas aeruginosa
Yap-Bondoc, F.; Timkovich, R.
Inactivation of cytochrome cd1 by hydrazines
J. Biol. Chem.
265
4247-4253
1990
Pseudomonas aeruginosa
Takano, T.; Dickerson, R.E.; Schichman, S.A.; Meyer, T.E.
Crystal data, molecular dimensions and molecular symmetry in cytochrome oxidase from Pseudomonas aeruginosa
J. Mol. Biol.
133
185-188
1979
Pseudomonas aeruginosa
Tegoni, M.; Silvestrini, M.C.; Lamzin, V.S.; Brunori, M.; Cambillau, C.
Crystallization and preliminary X-ray analysis of a new crystal form of nitrite reductase from Pseudomonas aeruginosa
J. Mol. Biol.
243
347-350
1994
Pseudomonas aeruginosa
Brown, K.; Roig-Zamboni, V.; Cutruzzola, F.; Arese, M.; Sun, W.; Brunori, M.; Cambillau, C.; Tegoni, M.
Domain swing upon His to Ala mutation in nitrite reductase of Pseudomonas aeruginosa
J. Mol. Biol.
312
541-554
2001
Pseudomonas aeruginosa
Nurizzo, D.; Silvestrini, M.C.; Mathieu, M.; Cutruzzola, F.; Bourgeois, D.; Fulop, V.; Hajdu, J.; Brunori, M.; Tegoni, M.; Cambillau, C.
N-terminal arm exchange is observed in the 2.15 A crystal structure of oxidized nitrite reductase from Pseudomonas aeruginosa
Structure
5
1157-1171
1997
Pseudomonas aeruginosa
Harris, R.L.; Eady, R.R.; Hasnain, S.S.; Sawers, R.G.
Coordinate synthesis of azurin I and copper nitrite reductase in Alcaligenes xylosoxidans during denitrification
Arch. Microbiol.
186
241-249
2006
Achromobacter xylosoxidans
Yamaguchi, K.; Shuta, K.; Suzuki, S.
Roles of Trp144 and Tyr203 in copper-containing nitrite reductase from Achromobacter cycloclastes IAM1013
Biochem. Biophys. Res. Commun.
336
210-214
2005
Achromobacter cycloclastes, Achromobacter cycloclastes IAM1013
Zajicek, R.S.; Cartron, M.L.; Ferguson, S.J.
Probing the unusual oxidation/reduction behavior of Paracoccus pantotrophus cytochrome cd1 nitrite reductase by replacing a switchable methionine heme iron ligand with histidine
Biochemistry
45
11208-11216
2006
Paracoccus pantotrophus
Centola, F.; Rinaldo, S.; Brunori, M.; Cutruzzola, F.
Critical role of His369 in the reactivity of Pseudomonas aeruginosa cytochrome cd1 nitrite reductase with oxygen
FEBS J.
273
4495-4503
2006
Pseudomonas aeruginosa
Wijma, H.J.; MacPherson, I.; Farver, O.; Tocheva, E.I.; Pecht, I.; Verbeet, M.P.; Murphy, M.E.; Canters, G.W.
Effect of the methionine ligand on the reorganization energy of the type-1 copper site of nitrite reductase
J. Am. Chem. Soc.
129
519-525
2007
Alcaligenes faecalis, Alcaligenes faecalis S-6
Wijma, H.J.; Jeuken, L.J.; Verbeet, M.P.; Armstrong, F.A.; Canters, G.W.
A random-sequential mechanism for nitrite binding and active site reduction in copper-containing nitrite reductase
J. Biol. Chem.
281
16340-16346
2006
Alcaligenes faecalis
Suzuki, M.; Hirai, T.; Arai, H.; Ishii, M.; Igarashi, Y.
Purification, characterization, and gene cloning of thermophilic cytochrome cd1 nitrite reductase from Hydrogenobacter thermophilus TK-6
J. Biosci. Bioeng.
101
391-397
2006
Hydrogenobacter thermophilus (Q3LGA9), Hydrogenobacter thermophilus, Hydrogenobacter thermophilus TK-6 / IAM 12695 (Q3LGA9)
De Marothy, S.A.; Blomberg, M.R.; Siegbahn, P.E.
Elucidating the mechanism for the reduction of nitrite by copper nitrite reductase - a contribution from quantum chemical studies
J. Comput. Chem.
28
528-539
2007
Achromobacter xylosoxidans
Silaghi-Dumitrescu, R.
Copper-containing nitrite reductase: a DFT study of nitrite and nitric oxide adducts
J. Inorg. Biochem.
100
396-402
2006
Alcaligenes faecalis (P38501)
Hough, M.A.; Ellis, M.J.; Antonyuk, S.; Strange, R.W.; Sawers, G.; Eady, R.R.; Samar Hasnain, S.
High resolution structural studies of mutants provide insights into catalysis and electron transfer processes in copper nitrite reductase
J. Mol. Biol.
350
300-309
2005
Achromobacter xylosoxidans
Wijma, H.J.; Macpherson, I.; Alexandre, M.; Diederix, R.E.; Canters, G.W.; Murphy, M.E.; Verbeet, M.P.
A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase
J. Mol. Biol.
358
1081-1093
2006
Alcaligenes faecalis (P38501), Alcaligenes faecalis S-6 (P38501)
Laratta, W.P.; Nanaszko, M.J.; Shapleigh, J.P.
Electron transfer to nitrite reductase of Rhodobacter sphaeroides 2.4.3: examination of cytochromes c2 and cY
Microbiology
152
1479-1488
2006
Cereibacter sphaeroides
Antonyuk, S.V.; Strange, R.W.; Sawers, G.; Eady, R.R.; Hasnain, S.S.
Atomic resolution structures of resting-state, substrate- and product-complexed Cu-nitrite reductase provide insight into catalytic mechanism
Proc. Natl. Acad. Sci. USA
102
12041-12046
2005
Achromobacter cycloclastes (P25006)
Panesar, N.S.; Chan, K.W.
Evidence for nitrite reductase activity in intact mouse Leydig tumor cells
Steroids
71
984-992
2006
Mus musculus
Hira, D.; Nojiri, M.; Suzuki, S.
Crystallization and preliminary X-ray diffraction analysis of a complex between the electron-transfer partners hexameric Cu-containing nitrite reductase and pseudoazurin
Acta Crystallogr. Sect. F
65
116-119
2009
Hyphomicrobium denitrificans
Nojiri, M.; Shirota, F.; Hira, D.; Suzuki, S.
Expression, purification, crystallization and preliminary X-ray diffraction analysis of the soluble domain of PPA0092, a putative nitrite reductase from Propionibacterium acnes
Acta Crystallogr. Sect. F
65
123-127
2009
Cutibacterium acnes (Q6ABN0)
Kim, S.W.; Fushinobu, S.; Zhou, S.; Wakagi, T.; Shoun, H.
Eukaryotic nirK genes encoding copper-containing nitrite reductase: originating from the protomitochondrion?
Appl. Environ. Microbiol.
75
2652-2658
2009
Fusarium oxysporum (A9XR52)
Hough, M.A.; Eady, R.R.; Hasnain, S.S.
Identification of the proton channel to the active site type 2 Cu center of nitrite reductase: structural and enzymatic properties of the His254Phe and Asn90Ser mutants
Biochemistry
47
13547-13553
2008
Achromobacter xylosoxidans (O68601)
Tocheva, E.I.; Eltis, L.D.; Murphy, M.E.
Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules
Biochemistry
47
4452-4460
2008
Alcaligenes faecalis (P38501), Alcaligenes faecalis S-6 (P38501), Alcaligenes faecalis S-6
Lui, F.E.; Kluger, R.
Enhancing nitrite reductase activity of modified hemoglobin: bis-tetramers and their PEGylated derivatives
Biochemistry
48
11912-11919
2009
Homo sapiens
Isoda, N.; Yokoyama, H.; Nojiri, M.; Suzuki, S.; Yamaguchi, K.
Electroreduction of nitrite to nitrogen oxide by a copper-containing nitrite reductase model complex incorporated into collagen film
Bioelectrochemistry
77
82-88
2009
synthetic construct
Sato, K.; Firbank, S.J.; Li, C.; Banfield, M.J.; Dennison, C.
The importance of the long type 1 copper-binding loop of nitrite reductase for structure and function
Chemistry
14
5820-5828
2008
Achromobacter xylosoxidans (O68601)
Oganesyan, V.S.; Cheesman, M.R.; Thomson, A.J.
Magnetic circular dichroism evidence for a weakly coupled heme-radical pair at the active site of cytochrome cd1, a nitrite reductase
Inorg. Chem.
46
10950-10952
2007
Paracoccus pantotrophus (P72181)
Radoul, M.; Centola, F.; Rinaldo, S.; Cutruzzola, F.; Pecht, I.; Goldfarb, D.
Heme d1 nitrosyl complex of cd1 nitrite reductase studied by high-field-pulse electron paramagnetic resonance spectroscopy
Inorg. Chem.
48
3913-3915
2009
Pseudomonas aeruginosa
Stefanelli, P.; Colotti, G.; Neri, A.; Salucci, M.L.; Miccoli, R.; Di Leandro, L.; Ippoliti, R.
Molecular characterization of nitrite reductase gene (aniA) and gene product in Neisseria meningitidis isolates: is aniA essential for meningococcal survival?
IUBMB Life
60
629-636
2008
Neisseria meningitidis (Q9JYE1)
Kujime, M.; Izumi, C.; Tomura, M.; Hada, M.; Fujii, H.
Effect of a tridentate ligand on the structure, electronic structure, and reactivity of the copper(I) nitrite complex: role of the conserved three-histidine ligand environment of the type-2 copper site in copper-containing nitrite reductases
J. Am. Chem. Soc.
130
6088-6098
2008
synthetic construct
van Wonderen, J.H.; Knight, C.; Oganesyan, V.S.; George, S.J.; Zumft, W.G.; Cheesman, M.R.
Activation of the cytochrome cd1 nitrite reductase from Paracoccus pantotrophus. Reaction of oxidized enzyme with substrate drives a ligand switch at heme c
J. Biol. Chem.
282
28207-28215
2007
Pseudomonas stutzeri (P24040), Pseudomonas stutzeri, Paracoccus pantotrophus (P72181), Paracoccus pantotrophus, Pseudomonas stutzeri ZoBell / ATCC 14405 (P24040)
Sam, K.A.; Strampraad, M.J.; de Vries, S.; Ferguson, S.J.
Very early reaction intermediates detected by microsecond timescale kinetics of cytochrome cd1 catalysed reduction of nitrite
J. Biol. Chem.
283
27403-27409
2008
Paracoccus pantotrophus (P72181)
Basu, S.; Azarova, N.A.; Font, M.D.; King, S.B.; Hogg, N.; Gladwin, M.T.; Shiva, S.; Kim-Shapiro, D.B.
Nitrite reductase activity of cytochrome c
J. Biol. Chem.
283
32590-32597
2008
Bos taurus
Hough, M.A.; Antonyuk, S.V.; Strange, R.W.; Eady, R.R.; Hasnain, S.S.
Crystallography with online optical and X-ray absorption spectroscopies demonstrates an ordered mechanism in copper nitrite reductase
J. Mol. Biol.
378
353-361
2008
Achromobacter xylosoxidans (O68601)
Nicke, T.; Schnitzer, T.; Muench, K.; Adamczack, J.; Haufschildt, K.; Buchmeier, S.; Kucklick, M.; Felgentraeger, U.; Jaensch, L.; Riedel, K.; Layer, G.
Maturation of the cytochrome cd1 nitrite reductase NirS from Pseudomonas aeruginosa requires transient interactions between the three proteins NirS, NirN and NirF
Biosci. Rep.
33
e00048
2013
Pseudomonas aeruginosa
Hira, D.; Toh, H.; Migita, C.T.; Okubo, H.; Nishiyama, T.; Hattori, M.; Furukawa, K.; Fujii, T.
Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1
FEBS Lett.
586
1658-1663
2012
uncultured bacterium
Li, Y.; Bali, S.; Borg, S.; Katzmann, E.; Ferguson, S.J.; Schueler, D.
Cytochrome cd1 nitrite reductase NirS is involved in anaerobic magnetite biomineralization in Magnetospirillum gryphiswaldense and requires NirN for proper d1 heme assembly
J. Bacteriol.
195
4297-4309
2013
Magnetospirillum gryphiswaldense (A4TUE6), Magnetospirillum gryphiswaldense
Tsuda, A.; Ishikawa, R.; Koteishi, H.; Tange, K.; Fukuda, Y.; Kobayashi, K.; Inoue, T.; Nojiri, M.
Structural and mechanistic insights into the electron flow through protein for cytochrome c-tethering copper nitrite reductase
J. Biochem.
154
51-60
2013
Pseudoalteromonas haloplanktis, Pseudoalteromonas haloplanktis TAC 125
Lin, Y.W.; Nie, C.M.; Liao, L.F.
Rational design of a nitrite reductase based on myoglobin: a molecular modeling and dynamics simulation study
J. Mol. Model.
18
4409-4415
2012
Physeter catodon
Esclapez, J.; Zafrilla, B.; Martnez-Espinosa, R.M.; Bonete, M.J.
Cu-NirK from Haloferax mediterranei as an example of metalloprotein maturation and exportation via Tat system
Biochim. Biophys. Acta
1834
1003-1009
2013
Haloferax mediterranei (D0RAY2), Haloferax mediterranei, Haloferax mediterranei DSM 1411 (D0RAY2)
Rinaldo, S.; Giardina, G.; Cutruzzola, F.
Nitrosylation of c heme in cd(1)-nitrite reductase is enhanced during catalysis
Biochem. Biophys. Res. Commun.
451
449-454
2014
Pseudomonas aeruginosa
Li, Y.; Hodak, M.; Bernholc, J.
Enzymatic mechanism of copper-containing nitrite reductase
Biochemistry
54
1233-1242
2015
Achromobacter cycloclastes (P25006)
Lintuluoto, M.; Lintuluoto, J.M.
DFT study on enzyme turnover including proton and electron transfers of copper-containing nitrite reductase
Biochemistry
55
4697-4707
2016
Geobacillus thermodenitrificans (A4IL26), Geobacillus thermodenitrificans NG80-2 (A4IL26), Geobacillus thermodenitrificans NG80-2
Fukuda, Y.; Koteishi, H.; Yoneda, R.; Tamada, T.; Takami, H.; Inoue, T.; Nojiri, M.
Structural and functional characterization of the Geobacillus copper nitrite reductase involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner
Biochim. Biophys. Acta
1837
396-405
2014
Geobacillus kaustophilus (Q5L1X8)
Pedroso, H.A.; Silveira, C.M.; Almeida, R.M.; Almeida, A.; Besson, S.; Moura, I.; Moura, J.J.; Almeida, M.G.
Electron transfer and docking between cytochrome cd1 nitrite reductase and different redox partners - a comparative study
Biochim. Biophys. Acta
1857
1412-1421
2016
Marinobacter nauticus
Adhikari, U.K.; Rahman, M.M.
Comparative analysis of amino acid composition in the active site of nirk gene encoding copper-containing nitrite reductase (CuNiR) in bacterial spp
Comput. Biol. Chem.
67
102-113
2017
Phaeobacter gallaeciensis, Shinella sp. DD12 (A0A021X0B0), Tetrasphaera japonica (A0A077M3S9), Tetrasphaera jenkinsii (A0A077MDD6), Bosea sp. LC85 (A0A085FMZ3), Mesorhizobium plurifarium (A0A090F2L3), Pseudomonas protegens (A0A2C9EU40), Azospirillum lipoferum (G7ZE78), Sinorhizobium fredii (I3X948), Bradyrhizobium oligotrophicum (M4Z2Q6), Bradyrhizobium oligotrophicum S58 (M4Z2Q6), Pseudomonas protegens CHA0 (A0A2C9EU40), Azospirillum lipoferum 4B (G7ZE78), Tetrasphaera japonica T1-X7 (A0A077M3S9), Sinorhizobium fredii USDA 257 (I3X948), Phaeobacter gallaeciensis 2.10, Tetrasphaera jenkinsii Ben 74 (A0A077MDD6)
Hassan, J.; Bergaust, L.; Molstad, L.; de Vries, S.; Bakken, L.
Homeostatic control of nitric oxide (NO) at nanomolar concentrations in denitrifying bacteria and modelling and experimental determination of NO reductase kinetics in vivo in Paracoccus denitrificans
Environ. Microbiol.
18
2964-2978
2016
Paracoccus denitrificans
Fukuda, Y.; Tse, K.M.; Lintuluoto, M.; Fukunishi, Y.; Mizohata, E.; Matsumura, H.; Takami, H.; Nojiri, M.; Inoue, T.
Structural insights into the function of a thermostable copper-containing nitrite reductase
J. Biochem.
155
123-135
2014
Geobacillus thermodenitrificans (A4IL26), Geobacillus thermodenitrificans, Geobacillus thermodenitrificans NG80-2 (A4IL26)
Sparacino-Watkins, C.E.; Tejero, J.; Sun, B.; Gauthier, M.C.; Thomas, J.; Ragireddy, V.; Merchant, B.A.; Wang, J.; Azarov, I.; Basu, P.; Gladwin, M.T.
Nitrite reductase and nitric-oxide synthase activity of the mitochondrial molybdopterin enzymes mARC1 and mARC2
J. Biol. Chem.
289
10345-10358
2014
Homo sapiens (Q5VT66), Homo sapiens (Q969Z3), Homo sapiens
Silveira, C.M.; Quintas, P.O.; Moura, I.; Moura, J.J.; Hildebrandt, P.; Almeida, M.G.; Todorovic, S.
SERR spectroelectrochemical study of cytochrome cd1 nitrite reductase co-immobilized with physiological redox partner cytochrome c552 on biocompatible metal electrodes
PLoS ONE
10
e0129940
2015
Marinobacter nauticus
Hedison, T.M.; Shenoy, R.T.; Iorgu, A.I.; Heyes, D.J.; Fisher, K.; Wright, G.S.A.; Hay, S.; Eady, R.R.; Antonyuk, S.V.; Hasnain, S.S.; Scrutton, N.S.
Unexpected roles of a tether harboring a tyrosine gatekeeper residue in modular nitrite reductase catalysis
ACS Catal.
9
6087-6099
2019
Ralstonia pickettii (B2UHR8), Ralstonia pickettii 12J (B2UHR8)
Fukuda, Y.; Matsusaki, T.; Tse, K.M.; Mizohata, E.; Murphy, M.E.P.; Inoue, T.
Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans
Acta crystallogr. Sect.D
74
769-777
2018
Geobacillus thermodenitrificans (A0A1W6VP04), Geobacillus thermodenitrificans
Hira, D.; Matsumura, M.; Kitamura, R.; Furukawa, K.; Fujii, T.
Unique hexameric structure of copper-containing nitrite reductase of an anammox bacterium KSU-1
Biochem. Biophys. Res. Commun.
526
654-660
2020
Candidatus Jettenia caeni (I3IR93), Candidatus Jettenia caeni
Qin, X.; Chen, X.
Remote water-mediated proton transfer triggers inter-Cu electron transfer nitrite reduction activation in copper-containing nitrite reductase
ChemBioChem
22
1405-1414
2021
Alcaligenes faecalis (P38501)
Sasaki, D.; Watanabe, T.F.; Eady, R.R.; Garratt, R.C.; Antonyuk, S.V.; Hasnain, S.S.
Reverse protein engineering of a novel 4-domain copper nitrite reductase reveals functional regulation by protein-protein interaction
FEBS J.
288
262-280
2021
Bradyrhizobium sp. ORS 375 (H0SHH5)
Sanchez, C.; Minamisawa, K.
Redundant roles of Bradyrhizobium oligotrophicum Cu-type (NirK) and cd1-type (NirS) nitrite reductase genes under denitrifying conditions
FEMS Microbiol. Lett.
365
fny015
2018
Bradyrhizobium oligotrophicum (M4Z2Q6), Bradyrhizobium oligotrophicum (M4ZG55), Bradyrhizobium oligotrophicum, Bradyrhizobium oligotrophicum S58 (M4Z2Q6), Bradyrhizobium oligotrophicum S58 (M4ZG55), Bradyrhizobium oligotrophicum S58
Sasaki, D.; Watanabe, T.F.; Eady, R.R.; Garratt, R.C.; Antonyuk, S.V.; Hasnain, S.S.
Structures of substrate- and product-bound forms of a multi-domain copper nitrite reductase shed light on the role of domain tethering in protein complexes
IUCrJ
7
557-565
2020
Hyphomicrobium denitrificans (N0B9M5), Hyphomicrobium denitrificans 1NES1 (N0B9M5)
Kobayashi, S.; Hira, D.; Yoshida, K.; Toyofuku, M.; Shida, Y.; Ogasawara, W.; Yamaguchi, T.; Araki, N.; Oshiki, M.
Nitric oxide production from nitrite reduction and hydroxylamine oxidation by copper-containing dissimilatory nitrite reductase (NirK) from the aerobic ammonia-oxidizing archaeon, Nitrososphaera viennensis
Microbes Environ.
33
428-434
2018
Nitrososphaera viennensis, Nitrososphaera viennensis (A0A060HKX3), Nitrososphaera viennensis JCM19564, Nitrososphaera viennensis EN76 (A0A060HKX3)
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